View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1137_low_56 (Length: 476)
Name: NF1137_low_56
Description: NF1137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1137_low_56 |
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Alignment Details
Target: chr2 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 29 - 464
Target Start/End: Complemental strand, 4422617 - 4422182
Alignment:
| Q |
29 |
attagccatgtcaatgctatgaaagttgttagtattatcctatccctcaataaataataaagcatactcattcagatgagcaccaccatttggatttctt |
128 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
4422617 |
attagccatgtcaatgctatgaaagttgttagtattatcctatccctcaataaataataaagcatactcattcagatgaacaccaccatttggatttctt |
4422518 |
T |
|
| Q |
129 |
tcaccaatgccacaagtttcttatgtcatttcttaatagcattaannnnnnnggttcatagaatagaaccatggacgcagcgccgcatttagcacacgtt |
228 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4422517 |
tcaccaatgccacaagtttcttatgtcatttcttaatagtattattttttttggttcatagaatagaaccatggacgcagcgccgcatttagcacacgtt |
4422418 |
T |
|
| Q |
229 |
gccattttgcttgcttcaatactaactaagcctctaattagtcctccaagaataaagctgtattaaagatccaaccgtgtggcttgnnnnnnnaataata |
328 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
4422417 |
gccattttgcttgcttcaatactaactaagcctctaattagtcctccaagaataaagctgtattaaagatccaaccgtgtggcttgtttttttaataata |
4422318 |
T |
|
| Q |
329 |
gtaatctctctattaatctatcacttgaacacttccttaatcaaccccacctttctttatctctaagaaattgatgattctccttgtgtattgtttcacg |
428 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4422317 |
gtaatctctctattaatctatcacttgaacacttccttaatcaaccccacctttctttatctctaagaaattgatgattctccttgtgtattgtttcacg |
4422218 |
T |
|
| Q |
429 |
ccaaattgtttagatctggaatagattcatgatatt |
464 |
Q |
| |
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|||||| |||||||| |||||||||||||||||||| |
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| T |
4422217 |
ccaaatagtttagatttggaatagattcatgatatt |
4422182 |
T |
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