View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1137_low_6 (Length: 824)
Name: NF1137_low_6
Description: NF1137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1137_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 422; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 319 - 793
Target Start/End: Original strand, 43597357 - 43597835
Alignment:
| Q |
319 |
tatggacgaaattgatgctgaaatgcctgatgcgccgagtttatctgtagattttactgatgtgttcactattgaagaaatatttgtaagattaattgaa |
418 |
Q |
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| T |
43597357 |
tatggacgaaattgatgctgaaatgcctgatgcgccgagtttatctgtagattttactgatgtgttcactactgaagaaatatttgtaagattaattgaa |
43597456 |
T |
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| Q |
419 |
attataagtagttaatttataaataaacatggtttgagctattgtctcaattattttttaagattatttgtacccgtgaagcagtgttactgtgggcata |
518 |
Q |
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| T |
43597457 |
attataagtagttaatttataaataaacatggtttgagctattgtctgaattattttttaagattatctgtacccgtgaagcggtgttactgtgggcata |
43597556 |
T |
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| Q |
519 |
aacacttggaaaacatcattcaactatcattgttactattaggtctgatacagatacgagaaaaagatgaaggaacgaccccaaattaattttggtttgt |
618 |
Q |
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| T |
43597557 |
aaaacttggaaaacatcattgaactatcattgttactattaggtctgatacagatacgagaaaaagatgaaggaacgaccccaagttaattttgggttgt |
43597656 |
T |
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| Q |
619 |
gaaagaggtggtagatataaatcaaaacaaagttcaacaatcacttattctaaaaaggtaaatgtttattcaaaatcggatcagtaccaaagagaatgga |
718 |
Q |
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| T |
43597657 |
gaaagaggtggtagatataaatcaaaacaaagttcaacaatcacttattctaataaggtaaatgtttattcaaaatcggatcagtaccaaagagaatgga |
43597756 |
T |
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| Q |
719 |
tagttcatgttcggtgtgat----actcacaatcatgaattagcaaataccttagaaggtcatccttatatgtgttgtt |
793 |
Q |
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| T |
43597757 |
tagttcatgttcagtgtgatactcactcacaatcatgaattagcaaataccttagaaggtcatccttatatgtgttgtt |
43597835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 38 - 314
Target Start/End: Original strand, 43597052 - 43597325
Alignment:
| Q |
38 |
gaaatttacttgtgacactagttgtacttgtacctcacactctctaaatttcaatttatttctannnnnnnncatnnnnnnntaagataagtaaaaaaca |
137 |
Q |
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| T |
43597052 |
gaaatttacttgtgacactagttgtacttgtacctcacactct--aaatttcaatttatttctattttttt-catacaaaaataagataagtaaaaaaca |
43597148 |
T |
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| Q |
138 |
tagtgaacaagtatggaaaattttcggattgcaattttaaccggaaattttacttgaccagaattgcatctttagtgaggaggttttgagtggctaaaat |
237 |
Q |
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| T |
43597149 |
tagtgaacaagtatggaaaattttcggattgcaactttaaccggaaattttacttgaccagaattgcatctttagtgaggaggttttgagtggctaagat |
43597248 |
T |
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| Q |
238 |
ttcagaataaacaaattaatataaattttgatcttacaaatttatggaaattttggttactcctagagatgatgaac |
314 |
Q |
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| T |
43597249 |
ttcagaataaacaaattaatataaattttgatcttacaaatttatggaaattttggttactcctagagatgatgaac |
43597325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 789 - 824
Target Start/End: Original strand, 43597857 - 43597892
Alignment:
| Q |
789 |
ttgttaatgacatgacaaagtttcacatgccactaa |
824 |
Q |
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| T |
43597857 |
ttgttaatgacatgacaaagtttcacatgccactaa |
43597892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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