View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1137_low_64 (Length: 446)

Name: NF1137_low_64
Description: NF1137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1137_low_64
NF1137_low_64
[»] chr1 (2 HSPs)
chr1 (12-442)||(9581516-9581946)
chr1 (11-400)||(9587086-9587474)
[»] chr7 (3 HSPs)
chr7 (127-250)||(10615654-10615777)
chr7 (123-252)||(10169040-10169169)
chr7 (123-252)||(10176565-10176694)
[»] chr4 (13 HSPs)
chr4 (123-239)||(1755490-1755606)
chr4 (194-299)||(553767-553872)
chr4 (336-383)||(1524177-1524224)
chr4 (16-78)||(532653-532715)
chr4 (183-232)||(3437630-3437679)
chr4 (182-290)||(661854-661962)
chr4 (345-385)||(2373334-2373374)
chr4 (184-252)||(2547289-2547357)
chr4 (181-233)||(55907684-55907736)
chr4 (265-304)||(1481722-1481761)
chr4 (264-298)||(53760237-53760271)
chr4 (186-235)||(571330-571379)
chr4 (188-240)||(5106558-5106610)
[»] chr6 (8 HSPs)
chr6 (114-241)||(6417020-6417147)
chr6 (181-250)||(7132300-7132369)
chr6 (182-250)||(7135224-7135292)
chr6 (182-250)||(7138147-7138215)
chr6 (181-288)||(8913374-8913481)
chr6 (123-169)||(9412061-9412107)
chr6 (188-241)||(6423907-6423960)
chr6 (11-79)||(9411955-9412023)
[»] chr3 (2 HSPs)
chr3 (181-298)||(51763334-51763451)
chr3 (114-250)||(13469641-13469777)
[»] chr5 (2 HSPs)
chr5 (265-374)||(32268614-32268723)
chr5 (188-293)||(41900443-41900548)
[»] chr2 (1 HSPs)
chr2 (181-233)||(1036620-1036672)
[»] chr8 (3 HSPs)
chr8 (111-297)||(32151893-32152079)
chr8 (183-287)||(14004140-14004244)
chr8 (264-304)||(17642873-17642913)


Alignment Details
Target: chr1 (Bit Score: 275; Significance: 1e-153; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 12 - 442
Target Start/End: Original strand, 9581516 - 9581946
Alignment:
Q  12 agagagattaattttgcggagtctgaaaagtgctaacgaaagagtctctaccccatggagaaagctattgcaaccgtcgatacaaagtaaagggtcattg 111  Q
    ||||||||||||||||||||||||| ||| |||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |||||    
T  9581516 agagagattaattttgcggagtctggaaaatgctaatgaaagagtctctaccccatggagaatgctattgcaaccgtcgatacaaaataaagggccattg 9581615  T
Q  112 aggtcaagtatttcaagtaaagggaaacattcggcaatgaggaacaagtcattactatagaaatcacagatgttggaacaaatgagagatgtcaaagttg 211  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||  || |||||| |||||||||||||||||||| ||||    
T  9581616 aggtcaagtatttcaagtaaaggaaaacattcggcaatgaggaacaagtcattactattgaaaatacggatgttcgaacaaatgagagatgtcaacgttg 9581715  T
Q  212 taatctttaaggagaaagctcgcaacccatgtgcaggaatgtaagtttggcgggagagattgagcgatgtgagtttcaatgggaaacatgagacttgaga 311  Q
    ||||||||| ||||||||||||||  ||||  ||||||||||| | |||| ||||||||||||||||||||||||||||||||||||| ||||||||| |    
T  9581716 taatctttacggagaaagctcgcagtccatcagcaggaatgtaggattggtgggagagattgagcgatgtgagtttcaatgggaaacaagagacttgata 9581815  T
Q  312 caaacgctcgttgaggttacttatgtaccacgtgaggtcgagggaggtgaggttggtgaatctttggaagaggccatagggaagcgggtgtgttgattca 411  Q
    || | ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||  || |||||||||||    
T  9581816 cagaagctcgttgaggttacctctgtaccacgtgaggtcgagggaggtgaggttggtgaatctttggaagaggcgagagggaagaaggcgtgttgattca 9581915  T
Q  412 cagcaggcaggcacagccaaagaaaatagga 442  Q
    | || ||  | ||| || |||||||||||||    
T  9581916 ctgccggaggacacggcgaaagaaaatagga 9581946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 11 - 400
Target Start/End: Original strand, 9587086 - 9587474
Alignment:
Q  11 cagagagattaattttgcggagtctgaaaagtgctaacgaaagagtctctaccccatggagaaagctattgcaaccgtcgatacaaagtaaagggtcatt 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||  ||||| |||||||||| |    
T  9587086 cagagagattaattttgcggagtctgaaaagtgctaacgaaagagtctcaaccccatggagaaagctattgcaactgtcgtcacaaattaaagggtcact 9587185  T
Q  111 gaggtcaagtatttcaagtaaagggaaacattcggcaatgaggaacaagtcattactatagaaatcacagatgttggaacaaatgagagatgtcaaagtt 210  Q
     ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| ||| |||||| |||||||||||||||||||| |||    
T  9587186 taggtcaagtatttcaagtaaagggaaacatttggcaatgaggaacaagtcattactattgaaaacacggatgtttgaacaaatgagagatgtcaacgtt 9587285  T
Q  211 gtaatctttaaggagaaagctcgcaacccatgtgcaggaatgtaagtttggcgggagagattgagcgatgtgagtttcaatgggaaacatgagacttgag 310  Q
    ||||||||||||||||||||  ||||||||  ||| |||||| | | ||| | |||||||||||||||||||||||||||||||||||| ||||||||||    
T  9587286 gtaatctttaaggagaaagcatgcaacccaattgcgggaatgcaggattgactggagagattgagcgatgtgagtttcaatgggaaacaagagacttgag 9587385  T
Q  311 acaaacgctcgttgaggttacttatgtaccacgtgaggtcgagggaggtgaggttggtgaatctttggaagaggccatagggaagcgggt 400  Q
    | | | |||||||||||| || | |||| | |||||||||||||||||||||||||||||||||||| |||| || | ||||||| ||||    
T  9587386 atagaagctcgttgaggtcacctttgtagc-cgtgaggtcgagggaggtgaggttggtgaatctttgaaagacgcgagagggaagagggt 9587474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 1e-20; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 127 - 250
Target Start/End: Original strand, 10615654 - 10615777
Alignment:
Q  127 agtaaagggaaacattcggcaatgaggaacaagtcattactatagaaatcacagatgttggaacaaatgagagatgtcaaagttgtaatctttaaggaga 226  Q
    ||||||||||||||||| ||||| |||||||  ||| |||||| ||| | |  ||||| ||||||| ||||||| ||||||||||||||||||  |||||    
T  10615654 agtaaagggaaacattctgcaataaggaacagatcactactattgaagttagcgatgtgggaacaagtgagagaggtcaaagttgtaatcttttgggaga 10615753  T
Q  227 aagctcgcaacccatgtgcaggaa 250  Q
    ||||||| ||||||| ||| ||||    
T  10615754 aagctcgtaacccatttgcgggaa 10615777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 123 - 252
Target Start/End: Complemental strand, 10169169 - 10169040
Alignment:
Q  123 ttcaagtaaagggaaacattcggcaatgaggaacaagtcattactatagaaatcacagatgttggaacaaatgagagatgtcaaagttgtaatctttaag 222  Q
    |||||| ||||| |||||||| || || || ||||||||| || |||  ||||||   |||| ||||||| ||||||| ||||||||| |||| |||       
T  10169169 ttcaagcaaaggaaaacattctgcgataagaaacaagtcagtagtattaaaatcatcaatgtcggaacaagtgagagaggtcaaagttctaatattttga 10169070  T
Q  223 gagaaagctcgcaacccatgtgcaggaatg 252  Q
    |||||| |||||||||||| ||| ||||||    
T  10169069 gagaaaactcgcaacccatttgcgggaatg 10169040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 123 - 252
Target Start/End: Complemental strand, 10176694 - 10176565
Alignment:
Q  123 ttcaagtaaagggaaacattcggcaatgaggaacaagtcattactatagaaatcacagatgttggaacaaatgagagatgtcaaagttgtaatctttaag 222  Q
    |||||| ||||| |||||||| || || || ||||||||| || |||  ||||||   |||| ||||||| ||||||| ||||||||| |||| |||       
T  10176694 ttcaagcaaaggaaaacattctgcgataagaaacaagtcagtagtattaaaatcatcaatgtcggaacaagtgagagaggtcaaagttctaatattttga 10176595  T
Q  223 gagaaagctcgcaacccatgtgcaggaatg 252  Q
    |||||| |||||||||||| ||| ||||||    
T  10176594 gagaaaactcgcaacccatttgcgggaatg 10176565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 123 - 239
Target Start/End: Original strand, 1755490 - 1755606
Alignment:
Q  123 ttcaagtaaagggaaacattcggcaatgaggaacaagtcattactatagaaatcacagatgttggaacaaatgagagatgtcaaagttgtaatctttaag 222  Q
    |||||| ||||||||||| || ||||||||||| ||||||||  ||| || || |  ||||||||||||  ||||||| ||||||||||||||||||       
T  1755490 ttcaagcaaagggaaacagtcagcaatgaggaagaagtcattggtatggagatgagcgatgttggaacatgtgagagaggtcaaagttgtaatcttttga 1755589  T
Q  223 gagaaagctcgcaaccc 239  Q
    ||||||||| |||||||    
T  1755590 gagaaagcttgcaaccc 1755606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 194 - 299
Target Start/End: Original strand, 553767 - 553872
Alignment:
Q  194 tgagagatgtcaaagttgtaatctttaaggagaaagctcgcaacccatgtgcaggaatgtaagtttggcgggagagattgagcgatgtgagtttcaatgg 293  Q
    ||||||| |||||||||||||| |||  |||||||||||||||||||| ||| ||||||   | ||   ||||||||| ||| |||||||| ||||||||    
T  553767 tgagagaggtcaaagttgtaatgttttgggagaaagctcgcaacccatttgcgggaatggtgggtttttgggagagatcgagtgatgtgaggttcaatgg 553866  T
Q  294 gaaaca 299  Q
     |||||    
T  553867 aaaaca 553872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 336 - 383
Target Start/End: Complemental strand, 1524224 - 1524177
Alignment:
Q  336 gtaccacgtgaggtcgagggaggtgaggttggtgaatctttggaagag 383  Q
    |||||||||||| |||||||| |||||||||||||| |||||||||||    
T  1524224 gtaccacgtgagatcgagggaagtgaggttggtgaacctttggaagag 1524177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 16 - 78
Target Start/End: Original strand, 532653 - 532715
Alignment:
Q  16 agattaattttgcggagtctgaaaagtgctaacgaaagagtctctaccccatggagaaagcta 78  Q
    |||||||  ||||||||| ||||||||| ||| ||||||||||| || |||||||||||||||    
T  532653 agattaaccttgcggagtttgaaaagtgataatgaaagagtctccacaccatggagaaagcta 532715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 183 - 232
Target Start/End: Complemental strand, 3437679 - 3437630
Alignment:
Q  183 gttggaacaaatgagagatgtcaaagttgtaatctttaaggagaaagctc 232  Q
    |||||||||| ||||||| ||||||||||||||||||  |||||||||||    
T  3437679 gttggaacaactgagagaggtcaaagttgtaatcttttgggagaaagctc 3437630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 182 - 290
Target Start/End: Original strand, 661854 - 661962
Alignment:
Q  182 tgttggaacaaatgagagatgtcaaagttgtaatctttaaggagaaagctcgcaacccatgtgcaggaatgtaagtttggcgggagagattgagcgatgt 281  Q
    ||||| ||||||||||||| || ||||||||||| | |  ||||||||||||||| ||||  || ||||||   ||||||  |||||||||||| || ||    
T  661854 tgttgtaacaaatgagagaggttaaagttgtaatatattgggagaaagctcgcaaaccattagcgggaatggtggtttggttggagagattgagtgacgt 661953  T
Q  282 gagtttcaa 290  Q
    || ||||||    
T  661954 gattttcaa 661962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 345 - 385
Target Start/End: Complemental strand, 2373374 - 2373334
Alignment:
Q  345 gaggtcgagggaggtgaggttggtgaatctttggaagaggc 385  Q
    ||||||||||||||||||||||| ||| |||||||||||||    
T  2373374 gaggtcgagggaggtgaggttggggaacctttggaagaggc 2373334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 184 - 252
Target Start/End: Original strand, 2547289 - 2547357
Alignment:
Q  184 ttggaacaaatgagagatgtcaaagttgtaatctttaaggagaaagctcgcaacccatgtgcaggaatg 252  Q
    ||||||||||||||||| |||||| || | ||||||   || |||||||||||||||| ||||||||||    
T  2547289 ttggaacaaatgagagacgtcaaatttttcatcttttcagacaaagctcgcaacccatttgcaggaatg 2547357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 181 - 233
Target Start/End: Complemental strand, 55907736 - 55907684
Alignment:
Q  181 atgttggaacaaatgagagatgtcaaagttgtaatctttaaggagaaagctcg 233  Q
    ||||||||||||||||||||  ||||||||||||| |||  ||||||||||||    
T  55907736 atgttggaacaaatgagagaattcaaagttgtaatattttgggagaaagctcg 55907684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 265 - 304
Target Start/End: Original strand, 1481722 - 1481761
Alignment:
Q  265 gagagattgagcgatgtgagtttcaatgggaaacatgaga 304  Q
    |||| |||||||||||||||||||||||||||||| ||||    
T  1481722 gagatattgagcgatgtgagtttcaatgggaaacaggaga 1481761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 264 - 298
Target Start/End: Complemental strand, 53760271 - 53760237
Alignment:
Q  264 ggagagattgagcgatgtgagtttcaatgggaaac 298  Q
    |||||||||||| ||||||||||||||||||||||    
T  53760271 ggagagattgagtgatgtgagtttcaatgggaaac 53760237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 186 - 235
Target Start/End: Original strand, 571330 - 571379
Alignment:
Q  186 ggaacaaatgagagatgtcaaagttgtaatctttaaggagaaagctcgca 235  Q
    ||||||| |||||||||||||||||||||| |||  |||||| |||||||    
T  571330 ggaacaattgagagatgtcaaagttgtaatattttgggagaatgctcgca 571379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 188 - 240
Target Start/End: Complemental strand, 5106610 - 5106558
Alignment:
Q  188 aacaaatgagagatgtcaaagttgtaatctttaaggagaaagctcgcaaccca 240  Q
    ||||| ||| |||||||||| || | ||||||| |||||||||||||||||||    
T  5106610 aacaagtgatagatgtcaaatttttcatctttagggagaaagctcgcaaccca 5106558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 7e-16; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 114 - 241
Target Start/End: Original strand, 6417020 - 6417147
Alignment:
Q  114 gtcaagtatttcaagtaaagggaaacattcggcaatgaggaacaagtcattactatagaaatcacagatgttggaacaaatgagagatgtcaaagttgta 213  Q
    |||||||  |||||| |||||||||||||| ||||| |||||||  ||| |||  | ||||| |  ||||| ||||||| ||||||| ||||||||||||    
T  6417020 gtcaagttcttcaagcaaagggaaacattctgcaataaggaacagatcactaccgttgaaattaacgatgtgggaacaagtgagagaggtcaaagttgta 6417119  T
Q  214 atctttaaggagaaagctcgcaacccat 241  Q
     |||||  |||||||||||| |||||||    
T  6417120 ttcttttgggagaaagctcgtaacccat 6417147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 181 - 250
Target Start/End: Original strand, 7132300 - 7132369
Alignment:
Q  181 atgttggaacaaatgagagatgtcaaagttgtaatctttaaggagaaagctcgcaacccatgtgcaggaa 250  Q
    ||||||||||||  |||||||| |||||||||||| |||  |||||||||||||||||||| ||||||||    
T  7132300 atgttggaacaatcgagagatgccaaagttgtaatgttttgggagaaagctcgcaacccatttgcaggaa 7132369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 182 - 250
Target Start/End: Original strand, 7135224 - 7135292
Alignment:
Q  182 tgttggaacaaatgagagatgtcaaagttgtaatctttaaggagaaagctcgcaacccatgtgcaggaa 250  Q
    |||||||||||  |||||||| |||||||||||| |||  |||||||||||||||||||| ||||||||    
T  7135224 tgttggaacaatcgagagatgccaaagttgtaatgttttgggagaaagctcgcaacccatttgcaggaa 7135292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 182 - 250
Target Start/End: Original strand, 7138147 - 7138215
Alignment:
Q  182 tgttggaacaaatgagagatgtcaaagttgtaatctttaaggagaaagctcgcaacccatgtgcaggaa 250  Q
    |||||||||||  |||||||| |||||||||||| |||  |||||||||||||||||||| ||||||||    
T  7138147 tgttggaacaatcgagagatgccaaagttgtaatgttttgggagaaagctcgcaacccatttgcaggaa 7138215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 181 - 288
Target Start/End: Complemental strand, 8913481 - 8913374
Alignment:
Q  181 atgttggaacaaatgagagatgtcaaagttgtaatctttaaggagaaagctcgcaacccatgtgcaggaatgtaagtttggcgggagagattgagcgatg 280  Q
    |||||||||||| ||||||| ||||||||||||||||||   || ||| || |||||||||  ||||||| |     ||||  ||||| |||||||||||    
T  8913481 atgttggaacaattgagagaggtcaaagttgtaatctttttagataaaactagcaacccattagcaggaaaggtccattggttggagatattgagcgatg 8913382  T
Q  281 tgagtttc 288  Q
    ||||||||    
T  8913381 tgagtttc 8913374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 123 - 169
Target Start/End: Original strand, 9412061 - 9412107
Alignment:
Q  123 ttcaagtaaagggaaacattcggcaatgaggaacaagtcattactat 169  Q
    |||||| |||||||||||||| |||||||| ||||||||||| ||||    
T  9412061 ttcaagcaaagggaaacattcagcaatgagtaacaagtcattgctat 9412107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 188 - 241
Target Start/End: Original strand, 6423907 - 6423960
Alignment:
Q  188 aacaaatgagagatgtcaaagttgtaatctttaaggagaaagctcgcaacccat 241  Q
    ||||| ||||||| ||||||||||| || |||  ||||||||||||||||||||    
T  6423907 aacaagtgagagaggtcaaagttgttatgttttgggagaaagctcgcaacccat 6423960  T

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Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 11 - 79
Target Start/End: Original strand, 9411955 - 9412023
Alignment:
Q  11 cagagagattaattttgcggagtctgaaaagtgctaacgaaagagtctctaccccatggagaaagctat 79  Q
    ||||||||||||| |||  |||| |||||||||  || |||||||||||||||| ||  ||||||||||    
T  9411955 cagagagattaatcttggtgagtttgaaaagtgtcaatgaaagagtctctaccctattaagaaagctat 9412023  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 181 - 298
Target Start/End: Complemental strand, 51763451 - 51763334
Alignment:
Q  181 atgttggaacaaatgagagatgtcaaagttgtaatctttaaggagaaagctcgcaacccatgtgcagg-aatgtaagtttggcgggagagattgagcgat 279  Q
    |||| ||||||| ||||||||||||||||||||||||||   || ||| |||||||||||| || ||| || |||||  ||   ||||||||| || |||    
T  51763451 atgtgggaacaagtgagagatgtcaaagttgtaatcttttgtgaaaaaactcgcaacccatttgtaggaaaggtaag-ctgtttggagagattaagtgat 51763353  T
Q  280 gtgagtttcaatgggaaac 298  Q
    |||||||||||||||||||    
T  51763352 gtgagtttcaatgggaaac 51763334  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 114 - 250
Target Start/End: Complemental strand, 13469777 - 13469641
Alignment:
Q  114 gtcaagtatttcaagtaaagggaaacattcggcaatgaggaacaagtcattactatagaaatcacagatgttggaacaaatgagagatgtcaaagttgta 213  Q
    |||||||  |||||| || || |||||||| ||||| ||||||| |||| | |||| ||||| |   |||| ||||||| ||||||| ||||  ||||||    
T  13469777 gtcaagttcttcaagcaacggaaaacattctgcaataaggaacaggtcactgctattgaaattagcaatgtgggaacaagtgagagaggtcagcgttgta 13469678  T
Q  214 atctttaaggagaaagctcgcaacccatgtgcaggaa 250  Q
     |||||  |||||||||||| ||||||| ||||||||    
T  13469677 ttcttttgggagaaagctcgtaacccatttgcaggaa 13469641  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 265 - 374
Target Start/End: Original strand, 32268614 - 32268723
Alignment:
Q  265 gagagattgagcgatgtgagtttcaatgggaaacatgagacttgagacaaacgctcgttgaggttacttatgtaccacgtgaggtcgagggaggtgaggt 364  Q
    ||||||||||| || |||||||||||||| ||||  |||| |||| | | | ||| |||||| ||||   || | |||| ||||||||||||||||||||    
T  32268614 gagagattgagtgacgtgagtttcaatggaaaacgagagatttgacagagaagcttgttgagtttaccgttgaaacacgagaggtcgagggaggtgaggt 32268713  T
Q  365 tggtgaatct 374  Q
    ||||||||||    
T  32268714 tggtgaatct 32268723  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 188 - 293
Target Start/End: Complemental strand, 41900548 - 41900443
Alignment:
Q  188 aacaaatgagagatgtcaaagttgtaatctttaaggagaaagctcgcaacccatgtgcaggaatgtaagtttggcgggagagattgagcgatgtgagttt 287  Q
    ||||| ||||||| ||||||||||||||||||  ||| |||||||| ||||||  ||| || |||    |||||   ||||| ||||| |||||||||||    
T  41900548 aacaagtgagagaggtcaaagttgtaatctttttggaaaaagctcgaaacccaaatgcggggatgacgctttggtctgagagtttgagtgatgtgagttt 41900449  T
Q  288 caatgg 293  Q
    ||||||    
T  41900448 caatgg 41900443  T

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Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 181 - 233
Target Start/End: Complemental strand, 1036672 - 1036620
Alignment:
Q  181 atgttggaacaaatgagagatgtcaaagttgtaatctttaaggagaaagctcg 233  Q
    |||||||||||||||||||| |||||||||||||| |||  ||||||||||||    
T  1036672 atgttggaacaaatgagagaagtcaaagttgtaatattttgggagaaagctcg 1036620  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 111 - 297
Target Start/End: Original strand, 32151893 - 32152079
Alignment:
Q  111 gaggtcaagtatttcaagtaaagggaaacattcggcaatgaggaacaagtcattactatagaaatcacagatgttggaacaaatgagagatgtcaaagtt 210  Q
    ||||||||||  ||| || ||||||||||| ||||||||||||||||||||  | | || ||||  | | ||    |||||| ||||||| |||||||||    
T  32151893 gaggtcaagttcttcgagcaaagggaaacaatcggcaatgaggaacaagtcggtgccattgaaagaataaatacgagaacaagtgagagaggtcaaagtt 32151992  T
Q  211 gtaatctttaaggagaaagctcgcaacccatgtgcaggaat-gtaagtttggcgggagagattgagcgatgtgagtttcaatgggaaa 297  Q
    ||||| |||  |||||||||| | | |||||   |||| || |||||||| |  |||||||||||| |||||||| ||||| ||||||    
T  32151993 gtaatgttttgggagaaagcttgtatcccattcacaggtatggtaagttt-gttggagagattgagtgatgtgaggttcaacgggaaa 32152079  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 183 - 287
Target Start/End: Original strand, 14004140 - 14004244
Alignment:
Q  183 gttggaacaaatgagagatgtcaaagttgtaatctttaaggagaaagctcgcaacccatgtgcaggaatgtaagtttggcgggagagattgagcgatgtg 282  Q
    |||||||||||| || || |||||||||||||| ||    |||||||||||||| ||||  ||||||| |   | ||||  ||| |||||||||||||||    
T  14004140 gttggaacaaataagtgaggtcaaagttgtaatgttctgagagaaagctcgcaaaccattagcaggaaggatgggttggttggaaagattgagcgatgtg 14004239  T
Q  283 agttt 287  Q
    |||||    
T  14004240 agttt 14004244  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 264 - 304
Target Start/End: Complemental strand, 17642913 - 17642873
Alignment:
Q  264 ggagagattgagcgatgtgagtttcaatgggaaacatgaga 304  Q
    |||||||||||| ||||||||||||||||| ||||| ||||    
T  17642913 ggagagattgagtgatgtgagtttcaatggaaaacaagaga 17642873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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