View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1137_low_66 (Length: 443)
Name: NF1137_low_66
Description: NF1137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1137_low_66 |
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Alignment Details
Target: chr1 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 10 - 346
Target Start/End: Complemental strand, 45741489 - 45741156
Alignment:
| Q |
10 |
aataatatgggcattatggttagccaagaaccgtgttgtgttgcaactttcatggggattttgttgactgtgacaatattattattgtttacataatgct |
109 |
Q |
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| T |
45741489 |
aataatatgggcattatggttagccaagaaccgtgttgtgttgcaactttcatggggattttgttgactgtgacaatattattattgtttacataatgct |
45741390 |
T |
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| Q |
110 |
actttcaaggggctaggtcattacaagggataggaagaaagnnnnnnnncaggtttgcatttttctagttggtttaataattcctttgaatgtctgaaat |
209 |
Q |
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| T |
45741389 |
actttcaaggggctaggtcattacaagggataggaaaaaa---aaaaaacaggtttgcatttttctagttggtttaataattcctttgaatgtctgaaat |
45741293 |
T |
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| Q |
210 |
caattgcttgttaattgtaatgagttggagtatttcacattgtgggatgtgtgggcaatgacctgcacttaattttgataaacaannnnnnnnnnagaat |
309 |
Q |
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| T |
45741292 |
caattgcttgttaattgtaatgagttggagtatttcacattgtgggatgtgtgggcaatgacctgcacttaattttgataaacaattttttttttagaat |
45741193 |
T |
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| Q |
310 |
taaatacatgacatgacaaataaagacctatgttatt |
346 |
Q |
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| T |
45741192 |
taaatacatgacatgacaaataaagacctatgttatt |
45741156 |
T |
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