View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1137_low_67 (Length: 443)
Name: NF1137_low_67
Description: NF1137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1137_low_67 |
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Alignment Details
Target: chr1 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 13 - 346
Target Start/End: Complemental strand, 45741486 - 45741156
Alignment:
| Q |
13 |
aatatgggcattatggttagccaagaaccgtgttgtgttgcaactttcatggggattttgttgactgtgacaatattattattgtttacataatgctact |
112 |
Q |
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| T |
45741486 |
aatatgggcattatggttagccaagaaccgtgttgtgttgcaactttcatggggattttgttgactgtgacaatattattattgtttacataatgctact |
45741387 |
T |
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| Q |
113 |
ttcaaggggctaggtcattacaagggataggaagaaagnnnnnnnncaggtttgcatttttctagttggtttaataattcctttgaatgtctgaaatcaa |
212 |
Q |
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| T |
45741386 |
ttcaaggggctaggtcattacaagggataggaaaaaa---aaaaaacaggtttgcatttttctagttggtttaataattcctttgaatgtctgaaatcaa |
45741290 |
T |
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| Q |
213 |
ttgcttgttaattgtaatgagttggagtatttcacattgtgggatgtgtgggcaatgacctgcacttaattttgataaacaannnnnnnnnnagaattaa |
312 |
Q |
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| T |
45741289 |
ttgcttgttaattgtaatgagttggagtatttcacattgtgggatgtgtgggcaatgacctgcacttaattttgataaacaattttttttttagaattaa |
45741190 |
T |
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| Q |
313 |
atacatgacatgacaaataaagacctatgttatt |
346 |
Q |
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| T |
45741189 |
atacatgacatgacaaataaagacctatgttatt |
45741156 |
T |
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