View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1137_low_69 (Length: 440)
Name: NF1137_low_69
Description: NF1137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1137_low_69 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 342; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 71 - 440
Target Start/End: Complemental strand, 38923778 - 38923409
Alignment:
| Q |
71 |
catagggactacctacaacaacatggataaccatttggtacaagaagtgtatcagaactcgagttgggaccctagtgttcaggatatggattatgtccat |
170 |
Q |
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| T |
38923778 |
catagggaatacctacaacaacatggataaccatttggtacaagaagtgtatcagaactcgacttgggaccctagtgttcaggatatggattatgtcaat |
38923679 |
T |
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| Q |
171 |
caccaagaacaccgccaactatctgaacaacaatatcaacaatttatcgaggcgcaaaaccataaccaaaactacaatccctcgaccattctagaccctc |
270 |
Q |
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| T |
38923678 |
caccaagaacaccgccaactatctgaacaacaatatcaacaatttatcgaggcgcaaaaccataaccaaagctacaatccctcgaccattctagaccctc |
38923579 |
T |
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| Q |
271 |
attacccttcaccggatgtccttaaccttctcaacttacctagatgctcctcatctctgctcacaaattcatcccccatttgcatgacaaacccaactca |
370 |
Q |
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| T |
38923578 |
attacccttcaccggatgtccttaaccttctcaacttacctagatgctcttcatctttgctcacaaattcatccaccatttgcatgacaaacccaactca |
38923479 |
T |
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| Q |
371 |
aaatccacccaattttcataattcaatgacttttcttggagaccttccaataggatcatcagacaacaca |
440 |
Q |
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| T |
38923478 |
aaatccacccaattttcataattcaatgacttttcttggagaccttccaataggatcatcagacaacaca |
38923409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 228 - 424
Target Start/End: Complemental strand, 38910034 - 38909838
Alignment:
| Q |
228 |
aaccataaccaaaactacaatccctcgaccattctagaccctcattacccttcaccggatgtccttaaccttctcaacttacctagatgctcc---tcat |
324 |
Q |
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| T |
38910034 |
aaccataaacaaagctacaatccctcaaccactcaagcccctcattatccttcaccagatgtactaaatcttc---actttcctagatcctcagcttcat |
38909938 |
T |
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| Q |
325 |
ctctgctcacaaattcatcccccatttgcatgacaaacccaactcaaaatccacccaattttcataattcaatgacttttcttggagaccttccaatagg |
424 |
Q |
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| T |
38909937 |
ctttgctcacaaatccatccaccatttgcatcacaaacccaactcaaaagccacctaatttccattactcaatgagttttcttggagaccttccaatagg |
38909838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 83 - 191
Target Start/End: Complemental strand, 38910146 - 38910038
Alignment:
| Q |
83 |
ctacaacaacatggataaccatttggtacaagaagtgtatcagaactcgagttgggaccctagtgttcaggatatggattatgtccatcaccaagaacac |
182 |
Q |
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| T |
38910146 |
ctacaacaacatggataaccttttggagcaagaggtgtatcagaactcgagttgggaccctagtgctcaggatatggactatgccaatcaccaagaatac |
38910047 |
T |
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| Q |
183 |
cgccaacta |
191 |
Q |
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| T |
38910046 |
caccaacta |
38910038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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