View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1137_low_73 (Length: 428)
Name: NF1137_low_73
Description: NF1137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1137_low_73 |
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Alignment Details
Target: chr3 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 8 - 399
Target Start/End: Original strand, 33380134 - 33380525
Alignment:
| Q |
8 |
agattatacttgtacatgtagatgtcacgaccaggtaccaaacgacgtttacagagaaagcaagagcgtaagaaatcagggttgtgagtcatatcagctg |
107 |
Q |
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| T |
33380134 |
agattatacttgtacatgtagatgtcacgaccaggtaccaaacgacgtttacagagaaagcaagagcgtaagaaatcagggttgtgagtcatatcagctg |
33380233 |
T |
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| Q |
108 |
aatttcttctaaggtttctaggtgataccatggacataaccctgctctgatctgaaccgttgattccaggagaagttggtggatatggaccgtacggacc |
207 |
Q |
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| T |
33380234 |
aatttcttctaaggtttctaggtgataccatggacataaccctgctctgatctgaaccgttgattccaggagaagttggtggatatggaccgtacggacc |
33380333 |
T |
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| Q |
208 |
aacaccaggtccatgacggttgaaaaggttgttgttgttattgggatcttcttctgttgttactgtgttcagatcgaaggttatttctgacatgcttgtt |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
33380334 |
aacaccaggtccatgacggttgaaaaggttgttgttgttattgggatcttcttctgttgttactgtgttcagatcgaaggttatttctgacatacttgtt |
33380433 |
T |
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| Q |
308 |
gttcttttcattggtggacgaggtctcttccctaacatcatcttcttacttcttttgtattactaaaaccttacttgaagaagaagaagaag |
399 |
Q |
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| T |
33380434 |
gttcttttcattggtggacgaggtctcttccctaacatcatcttcttacttcttttgtattagtaaaaccttacttgaagaagaagaagaag |
33380525 |
T |
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