View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1137_low_74 (Length: 427)
Name: NF1137_low_74
Description: NF1137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1137_low_74 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 100 - 427
Target Start/End: Complemental strand, 42894111 - 42893787
Alignment:
| Q |
100 |
ctatcaactttagaaaaattaaatgaggtaaataaataaaactcctaatggaactcaatttttcttactgaattctgcataattcattaacataactgtt |
199 |
Q |
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| T |
42894111 |
ctatcaactttagaaaaattaaatgaggtaaataaataaaactcctaatggaactcaatttttcttactgaattctgcataattcattaacataactgtt |
42894012 |
T |
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| Q |
200 |
cactctttaaactgctagcactcgattacgtttatattgttattcggaatatagttttgtttttcttaattgataagcaacgttattgtggatgttgaat |
299 |
Q |
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| T |
42894011 |
cactctttaaactgctagcactcgattacgtttatattgttattcggaatatagttttgtttttcttaattgataagcaacgttattgtggatgttgaat |
42893912 |
T |
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| Q |
300 |
atcaattgttccatatctcaattaaacctatagttataaggatactactttttgttctnnnnnnnnnnnnnnnnnttgtatttagtttctttctttcggt |
399 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
42893911 |
atcaattgttccatatctcaattaagcctatagttataaggatactactttttgttct---ataataataataatttgtatttagtttctttctttcggt |
42893815 |
T |
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| Q |
400 |
ggtttacagtttgagggaattttttata |
427 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
42893814 |
ggtttacagtttgagggaattttttata |
42893787 |
T |
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