View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1137_low_75 (Length: 424)

Name: NF1137_low_75
Description: NF1137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1137_low_75
NF1137_low_75
[»] chr3 (7 HSPs)
chr3 (30-424)||(7102823-7103217)
chr3 (59-290)||(7127123-7127363)
chr3 (145-197)||(13493205-13493257)
chr3 (145-196)||(6561411-6561462)
chr3 (148-197)||(7119980-7120029)
chr3 (138-195)||(13460832-13460889)
chr3 (286-330)||(7127386-7127430)
[»] chr8 (4 HSPs)
chr8 (145-197)||(27700742-27700794)
chr8 (166-194)||(26292024-26292052)
chr8 (166-194)||(26305281-26305309)
chr8 (166-194)||(26338636-26338664)
[»] chr6 (1 HSPs)
chr6 (148-203)||(33839151-33839206)
[»] chr5 (2 HSPs)
chr5 (147-197)||(7023077-7023127)
chr5 (145-191)||(28092136-28092182)
[»] scaffold0438 (1 HSPs)
scaffold0438 (166-194)||(6406-6434)
[»] chr4 (1 HSPs)
chr4 (149-197)||(36590357-36590405)


Alignment Details
Target: chr3 (Bit Score: 375; Significance: 0; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 30 - 424
Target Start/End: Complemental strand, 7103217 - 7102823
Alignment:
Q  30 gaaacaactttcatattgcttttccaacgcactcatagatgccaaattagctctaaatcctgccatgtcacagaaagaagttgccacgttacgagaagcc 129  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7103217 gaaacaactttcatattgcttttccaacgcactcatagattccaaattagctctaaatcctgccatgtcacagaaagaagttgccacgttacgagaagcc 7103118  T
Q  130 ttcaaaaaaggatcatcatccatacctgagggaataattgactttttgcttcaaaactcaccttcagcccaagttaattattcaaaaggtgaaatctgcc 229  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||    
T  7103117 ttcaaaaaaagatcatcatccatacctgagggaataattgactttttgcttcaaaactcaccttcagcccaagttaattattcaaaaggtgagatcttcc 7103018  T
Q  230 ttttaattttgaaagataaattgtttactttgatttttgcttcctctatttgtctttccctaaggtggagaaacaaattgtacttcgattctaaaatgta 329  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7103017 ttttaattttgaaagataaattgtttactttgatttttgcttcctctatttgtctttccctaaggtggagaaacaaattgtacttcgattctaaaatgta 7102918  T
Q  330 agacttagataaattctaaattgtactttcagttcatagaagattcttagctgaaataaacttgagcccctaagttgtgaaaactgtttaattgt 424  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7102917 agacttagataaattctaaattgtacttttagttcatagaagattcttagctgaaataaacttgagcccctaagttgtgaaaactgtttaattgt 7102823  T

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Target: chr3; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 59 - 290
Target Start/End: Original strand, 7127123 - 7127363
Alignment:
Q  59 cactcatagatgccaaattagctctaaatcctgccatgtcacagaaagaagttgccacgttacgagaagccttcaaaaaaggatcatcatccatacctga 158  Q
    |||| |||||||||||||||||||     ||||||  ||||||  |||||| ||||| |||| ||||||| || ||| ||||||| ||||||||||||||    
T  7127123 cactgatagatgccaaattagctcagttgcctgccgggtcacaagaagaagctgccaagttaagagaagcatttaaagaaggatcttcatccatacctga 7127222  T
Q  159 gggaataattgactttttgcttcaaaactcaccttcagcccaagtt---------aatt--attcaaaaggtgaaatctgccttttaattttgaaagata 247  Q
     |||||| || ||||||||||||||||||||||||| ||  |||||         ||||  ||||||||||||||   ||| || ||||||||||||| |    
T  7127223 tggaatagtttactttttgcttcaaaactcaccttctgcaaaagttcatatcatcaattagattcaaaaggtgaa--gtgcattctaattttgaaagaga 7127320  T
Q  248 aattgtttactttgatttttgcttcctctatttgtctttccct 290  Q
    |||| ||||||||||||||||| |||| ||||| | |||||||    
T  7127321 aattctttactttgatttttgcctcctttatttttgtttccct 7127363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 145 - 197
Target Start/End: Original strand, 13493205 - 13493257
Alignment:
Q  145 tcatccatacctgagggaataattgactttttgcttcaaaactcaccttcagc 197  Q
    ||||||||||||||||||||| |||| ||||||||||||||||||||||||||    
T  13493205 tcatccatacctgagggaatacttgaatttttgcttcaaaactcaccttcagc 13493257  T

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Target: chr3; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 145 - 196
Target Start/End: Complemental strand, 6561462 - 6561411
Alignment:
Q  145 tcatccatacctgagggaataattgactttttgcttcaaaactcaccttcag 196  Q
    ||||||||||||||||||||| |||||||| |||||||||||||||||||||    
T  6561462 tcatccatacctgagggaatacttgactttatgcttcaaaactcaccttcag 6561411  T

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Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 148 - 197
Target Start/End: Original strand, 7119980 - 7120029
Alignment:
Q  148 tccatacctgagggaataattgactttttgcttcaaaactcaccttcagc 197  Q
    ||||||||||| |||||| | |||||||||||||||||||||||||||||    
T  7119980 tccatacctgatggaatagtcgactttttgcttcaaaactcaccttcagc 7120029  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 195
Target Start/End: Original strand, 13460832 - 13460889
Alignment:
Q  138 aggatcatcatccatacctgagggaataattgactttttgcttcaaaactcaccttca 195  Q
    |||||| |||||||||||||| | ||| ||| | |||||||||||||||||| |||||    
T  13460832 aggatcgtcatccatacctgatgaaatgattaattttttgcttcaaaactcaacttca 13460889  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 286 - 330
Target Start/End: Original strand, 7127386 - 7127430
Alignment:
Q  286 tccctaaggtggagaaacaaattgtacttcgattctaaaatgtaa 330  Q
    ||||| ||||||||||||||||||||||| ||| |||| ||||||    
T  7127386 tcccttaggtggagaaacaaattgtacttggatactaacatgtaa 7127430  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 145 - 197
Target Start/End: Complemental strand, 27700794 - 27700742
Alignment:
Q  145 tcatccatacctgagggaataattgactttttgcttcaaaactcaccttcagc 197  Q
    ||||| |||||||| || ||| |||||||||||||||||||||| ||||||||    
T  27700794 tcatctatacctgatggtatagttgactttttgcttcaaaactcgccttcagc 27700742  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 166 - 194
Target Start/End: Original strand, 26292024 - 26292052
Alignment:
Q  166 attgactttttgcttcaaaactcaccttc 194  Q
    |||||||||||||||||||||||||||||    
T  26292024 attgactttttgcttcaaaactcaccttc 26292052  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 166 - 194
Target Start/End: Original strand, 26305281 - 26305309
Alignment:
Q  166 attgactttttgcttcaaaactcaccttc 194  Q
    |||||||||||||||||||||||||||||    
T  26305281 attgactttttgcttcaaaactcaccttc 26305309  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 166 - 194
Target Start/End: Original strand, 26338636 - 26338664
Alignment:
Q  166 attgactttttgcttcaaaactcaccttc 194  Q
    |||||||||||||||||||||||||||||    
T  26338636 attgactttttgcttcaaaactcaccttc 26338664  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 148 - 203
Target Start/End: Complemental strand, 33839206 - 33839151
Alignment:
Q  148 tccatacctgagggaataattgactttttgcttcaaaactcaccttcagcccaagt 203  Q
    ||||||||||| |||||| | ||||| ||||||||||||||||| |||||| ||||    
T  33839206 tccatacctgatggaatagtggacttcttgcttcaaaactcaccgtcagccaaagt 33839151  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 147 - 197
Target Start/End: Original strand, 7023077 - 7023127
Alignment:
Q  147 atccatacctgagggaataattgactttttgcttcaaaactcaccttcagc 197  Q
    |||||||||||| |||||| ||||||||||||||| ||| ||||| |||||    
T  7023077 atccatacctgatggaatagttgactttttgcttcgaaagtcaccctcagc 7023127  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 145 - 191
Target Start/End: Original strand, 28092136 - 28092182
Alignment:
Q  145 tcatccatacctgagggaataattgactttttgcttcaaaactcacc 191  Q
    |||||||||||||| |||||| | ||||||||| |||||||||||||    
T  28092136 tcatccatacctgatggaatagtggactttttgattcaaaactcacc 28092182  T

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Target: scaffold0438 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0438
Description:

Target: scaffold0438; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 166 - 194
Target Start/End: Original strand, 6406 - 6434
Alignment:
Q  166 attgactttttgcttcaaaactcaccttc 194  Q
    |||||||||||||||||||||||||||||    
T  6406 attgactttttgcttcaaaactcaccttc 6434  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 149 - 197
Target Start/End: Complemental strand, 36590405 - 36590357
Alignment:
Q  149 ccatacctgagggaataattgactttttgcttcaaaactcaccttcagc 197  Q
    |||||||||| |||||| | ||||||||| ||||||||||||| |||||    
T  36590405 ccatacctgatggaatagtggactttttgattcaaaactcaccgtcagc 36590357  T

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