View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1137_low_77 (Length: 420)
Name: NF1137_low_77
Description: NF1137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1137_low_77 |
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Alignment Details
Target: chr1 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 31 - 407
Target Start/End: Original strand, 27722906 - 27723284
Alignment:
| Q |
31 |
ctatcaactgtgacatatctgcattgtacggtagcaattgccacactatatgattaaagttataatacttgatctctgttatcaaatataaataaaacga |
130 |
Q |
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| T |
27722906 |
ctatcaactgtgacatatctgcattgtacggtagcaattgccacactatatgattaaagttataatacttgatctctgttatcaaatataaataaaacga |
27723005 |
T |
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| Q |
131 |
cctgccgtttttgccatttaataatttgtaaagataactctgtata--tagttgcgttcacggttcaaaaactgtaattggaatctaattttgtgtttga |
228 |
Q |
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| T |
27723006 |
cctgccgtttttgccatttaataacttgtaaagataactctgtatatatagttgcgttcacggttcaaaaactgtaattgaaatctaattttgtctttga |
27723105 |
T |
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| Q |
229 |
ttacgcggtatcaatgctacaaatagtcctttgacaaattacggggaattttcatatcgatgatagaatgacatgcagaagacacgttcaaacaagcacc |
328 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
27723106 |
ttacgcggtatcaacgctacaaatagtcctttgacaaattacggggaattttcatatcgatgatagaatgacatgcagaagacacgtccaaacaagcacc |
27723205 |
T |
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| Q |
329 |
aagtcaaccagcaattgtaaattaactgtactagaatctgaggttctcactcctgtttccatgtgaaaaagctgtagta |
407 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
27723206 |
aagtcaaccagcaattgtaaattaactgtactagaatctgaggttctcactcctgtttctatgtgaaaaagctgtagta |
27723284 |
T |
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