View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1137_low_79 (Length: 407)

Name: NF1137_low_79
Description: NF1137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1137_low_79
NF1137_low_79
[»] chr3 (3 HSPs)
chr3 (10-407)||(24262937-24263332)
chr3 (96-136)||(27241928-27241968)
chr3 (358-398)||(41671470-41671510)
[»] scaffold0534 (1 HSPs)
scaffold0534 (358-398)||(961-1001)
[»] chr8 (1 HSPs)
chr8 (358-398)||(17566389-17566429)
[»] chr4 (2 HSPs)
chr4 (358-398)||(6346753-6346793)
chr4 (358-391)||(24719866-24719899)
[»] chr1 (1 HSPs)
chr1 (358-398)||(12513562-12513602)
[»] chr5 (2 HSPs)
chr5 (358-392)||(26021608-26021642)
chr5 (358-398)||(19979859-19979899)
[»] chr2 (2 HSPs)
chr2 (358-391)||(16767084-16767117)
chr2 (358-391)||(16767221-16767254)


Alignment Details
Target: chr3 (Bit Score: 277; Significance: 1e-155; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 10 - 407
Target Start/End: Original strand, 24262937 - 24263332
Alignment:
Q  10 aagaatatggaatattactaggatcttctgtttgcttttggtattgtgtcatatgtgacactttttaaattattattgcttggtcttttctagtttataa 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24262937 aagaatatggaatattactaggatcttctgtttgcttttggtattgtgtcatatgtgacactttttaaattattattgcttggtcttttctagtttataa 24263036  T
Q  110 gaacttctcaattaaaataagtttatggtccttcacttatataaaagttcttataagctcacagatgtatatagagagatgttaaatcacaaatttactg 209  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  24263037 gaacttctcaattaaaataagtttatggtccttcacttatataaaagttcttataagctcacagatgtatatagagagatgttaaatcacaaattttctg 24263136  T
Q  210 caaaattgagaatcaactaaatttaacatagnnnnnnnnnnttaatgttttaaaatgaaaagggaaaattattcttaataaatgttgcataatgnnnnnn 309  Q
    |||||||||||||||||||||||||||||||          |||||||||||||||||||||||||||||||||||||||||||||||||||||          
T  24263137 caaaattgagaatcaactaaatttaacatagaaaaaaaaaattaatgttttaaaatgaaaagggaaaattattcttaataaatgttgcataatgtttttt 24263236  T
Q  310 ngtgtgacaggaatactgaagnnnnnnnnnnngcattgttannnnnnngcttcaggtcaaaagggaagagcaaaatcgaaaattgtaaatgaacctct 407  Q
     |||||||||||||||| ||            |||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24263237 tgtgtgacaggaatactaaa--aaaaaaaaaagcattgttatttttttgcttcaggtcaaaagggaagagcaaaatcgaaaattgtaaatgaacctct 24263332  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 96 - 136
Target Start/End: Original strand, 27241928 - 27241968
Alignment:
Q  96 tttctagtttataagaacttctcaattaaaataagtttatg 136  Q
    ||||||| |||||||| ||||||||||||||||||||||||    
T  27241928 tttctagcttataagagcttctcaattaaaataagtttatg 27241968  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 358 - 398
Target Start/End: Complemental strand, 41671510 - 41671470
Alignment:
Q  358 gcttcaggtcaaaagggaagagcaaaatcgaaaattgtaaa 398  Q
    |||||||||| |||| ||||||||||||||| |||||||||    
T  41671510 gcttcaggtcgaaagagaagagcaaaatcgataattgtaaa 41671470  T

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Target: scaffold0534 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0534
Description:

Target: scaffold0534; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 358 - 398
Target Start/End: Complemental strand, 1001 - 961
Alignment:
Q  358 gcttcaggtcaaaagggaagagcaaaatcgaaaattgtaaa 398  Q
    |||||||||||||||||||||||||||| |||||| |||||    
T  1001 gcttcaggtcaaaagggaagagcaaaattgaaaatcgtaaa 961  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 358 - 398
Target Start/End: Complemental strand, 17566429 - 17566389
Alignment:
Q  358 gcttcaggtcaaaagggaagagcaaaatcgaaaattgtaaa 398  Q
    |||||||||||||||||||||||||||| |||||| |||||    
T  17566429 gcttcaggtcaaaagggaagagcaaaattgaaaatcgtaaa 17566389  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 358 - 398
Target Start/End: Original strand, 6346753 - 6346793
Alignment:
Q  358 gcttcaggtcaaaagggaagagcaaaatcgaaaattgtaaa 398  Q
    |||||||||| |||||||||||||||||||||||| |||||    
T  6346753 gcttcaggtcgaaagggaagagcaaaatcgaaaatcgtaaa 6346793  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 358 - 391
Target Start/End: Complemental strand, 24719899 - 24719866
Alignment:
Q  358 gcttcaggtcaaaagggaagagcaaaatcgaaaa 391  Q
    |||||||||| |||||||||||||||||||||||    
T  24719899 gcttcaggtcgaaagggaagagcaaaatcgaaaa 24719866  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 358 - 398
Target Start/End: Complemental strand, 12513602 - 12513562
Alignment:
Q  358 gcttcaggtcaaaagggaagagcaaaatcgaaaattgtaaa 398  Q
    ||||||||||||||| ||||||||||||||| |||||||||    
T  12513602 gcttcaggtcaaaagagaagagcaaaatcgacaattgtaaa 12513562  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 358 - 392
Target Start/End: Complemental strand, 26021642 - 26021608
Alignment:
Q  358 gcttcaggtcaaaagggaagagcaaaatcgaaaat 392  Q
    |||||||| ||||||||||||||||||||||||||    
T  26021642 gcttcaggccaaaagggaagagcaaaatcgaaaat 26021608  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 358 - 398
Target Start/End: Complemental strand, 19979899 - 19979859
Alignment:
Q  358 gcttcaggtcaaaagggaagagcaaaatcgaaaattgtaaa 398  Q
    ||||||||||||||| ||||||||||||||| ||| |||||    
T  19979899 gcttcaggtcaaaagagaagagcaaaatcgacaatcgtaaa 19979859  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 358 - 391
Target Start/End: Complemental strand, 16767117 - 16767084
Alignment:
Q  358 gcttcaggtcaaaagggaagagcaaaatcgaaaa 391  Q
    |||||||||||||| |||||||||||||||||||    
T  16767117 gcttcaggtcaaaaaggaagagcaaaatcgaaaa 16767084  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 358 - 391
Target Start/End: Complemental strand, 16767254 - 16767221
Alignment:
Q  358 gcttcaggtcaaaagggaagagcaaaatcgaaaa 391  Q
    |||||||||||||| |||||||||||||||||||    
T  16767254 gcttcaggtcaaaaaggaagagcaaaatcgaaaa 16767221  T

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