View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1137_low_8 (Length: 811)
Name: NF1137_low_8
Description: NF1137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1137_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 625; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 625; E-Value: 0
Query Start/End: Original strand, 30 - 736
Target Start/End: Original strand, 28438553 - 28439260
Alignment:
| Q |
30 |
agaagaacgtgtggctttatgcaaacttggnnnnnnnnn-atgagatcctcacaggtttcaagcttaatcttctactaaaattcaagttattatttatta |
128 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28438553 |
agaagaacgtgtggctttatgcaaacttggttttttttttatgagatcctcacaggtttcaagcttaatcttctactaaaattcaagttattatttatta |
28438652 |
T |
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| Q |
129 |
ttttccaactccattccatgcgagtaaagcaatatatatattgttgcttgtttaccaagcaaaggagtggattccctaaaaaggtgtcaacctactgaat |
228 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28438653 |
ttttccaactccattccatgcgagtaaagcaatatatatattgttgcttgtttaccaagcaaaggagtggattccctaaaaaggtgtcaacctactgaat |
28438752 |
T |
|
| Q |
229 |
gaaggttatctaaaagcagtgaaacccgacaatatttcagatagcctttcaattttttatggaggagtacagcaatatttaccaattaacaatttttagt |
328 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28438753 |
gaaggttatctaaaagcagtgaaacccgacaatatttcagatagcctttcaattttttatggaggagtacagcaatatttaccaattaacaatttttagt |
28438852 |
T |
|
| Q |
329 |
gtttatacgtatattgagagaaacccgataaatagtttaaattgtattacacgcccaaatagaatattaaccaagtggctcaggtgttgtcttcnnnnnn |
428 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28438853 |
gtttatacgtatattgagagaaacccgataaatagtttaaattgtattacacgcccaaatagaatattaaccaagtggctcaggtgttgtcttcaaaaca |
28438952 |
T |
|
| Q |
429 |
nnnnnnnnnntaagtggctcaagtgttataacatccaccaaaatatgaatcgttacgaaaaacacgagtttgatttgtaaatggaacattattgattaga |
528 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28438953 |
aaacaaaaaataagtggctcaagtgttataacatccaccaaaatatgaatcgttacgaaaaacacgagtttgatttgtaaatggaacattattgattaga |
28439052 |
T |
|
| Q |
529 |
ccgttcttatctttgattgtgtgtcttttcctaaaaaccggagagctaacgccaagaaaatatattaacgaagtatatagcccatgtaccatttgcagga |
628 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28439053 |
ccgttcttatctttgattgtgtgtcttttcctaaaaaccggagagctaacgccaagaaaatatattaacgaagtatatagcccatgtaccatttgcagga |
28439152 |
T |
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| Q |
629 |
atgataatactccaatctaattgtctacataacagaacatgaacttgtccagtcaatcgatatcttgaaatttaatgtctaacgttgtgtgtgtgaaata |
728 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28439153 |
atgataatactccaatctaattgtctacataacagaacatgaacttgtccagtcaatcgatatcttgaaatttaatgtctaacgttgtgtgtgtgaaata |
28439252 |
T |
|
| Q |
729 |
ttgttgga |
736 |
Q |
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|||||||| |
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| T |
28439253 |
ttgttgga |
28439260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 103
Target Start/End: Complemental strand, 35616400 - 35616367
Alignment:
| Q |
70 |
tgagatcctcacaggtttcaagcttaatcttcta |
103 |
Q |
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||||||||||||||| |||||||||||||||||| |
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| T |
35616400 |
tgagatcctcacaggcttcaagcttaatcttcta |
35616367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 164 - 207
Target Start/End: Complemental strand, 697039 - 696996
Alignment:
| Q |
164 |
atatattgttgcttgtttaccaagcaaaggagtggattccctaa |
207 |
Q |
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| T |
697039 |
atatattgttgcttatttaccaagcaaatgagtggattccctaa |
696996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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