View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1137_low_80 (Length: 405)
Name: NF1137_low_80
Description: NF1137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1137_low_80 |
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Alignment Details
Target: chr7 (Bit Score: 368; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 1 - 400
Target Start/End: Complemental strand, 25952234 - 25951835
Alignment:
| Q |
1 |
cccggttcactcttcttctccgtctccaaagagggcaacggagttgtagtctcattagatatgttaaatccaagaccagattgtttagtcctcggtttcg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25952234 |
cccggttcactcttcttctccgtctccaaagagggcaacggagttgtagtctcattagatatgttaaatccaagaccagattgtttagtcctcggtttcg |
25952135 |
T |
|
| Q |
101 |
cctcaataggatttaatataccctgctcattcttcccaagaccacctcctttataacccattttctccatcagcttcattcccattccgttataactctt |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25952134 |
cctcaataggatttaatataccctgctcattcttcccaagaccacctcctttataacccattttctccatcagcttcattcccattccgttataactctt |
25952035 |
T |
|
| Q |
201 |
gaatttcccaacatcaactgatccctcctgacctagaccctgctcctgtttattgtcatcaaatttatcctcattaggcatgaaagttccggtggaaaca |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |
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| T |
25952034 |
gaatttcccaacatcaactgatccctcctgacctagaccctgctcctgtttattgtcatcatatttatcctcattaggcatgaaaattccggtggaaaca |
25951935 |
T |
|
| Q |
301 |
aaatttaccggtttagtaaggttttgtttcttcgaggaatcgctgtgttttcttctctttatacccttgaatttcccaacatccactggtctctgctcct |
400 |
Q |
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|||||||||||||||||||||| ||||||||| ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| |||||||||| |
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| T |
25951934 |
aaatttaccggtttagtaaggtcctgtttcttcaaggaatcgctgtgttttcttcgctttataccctcgaatttcccaacatccactggactctgctcct |
25951835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 353
Target Start/End: Complemental strand, 25945638 - 25945286
Alignment:
| Q |
1 |
cccggttcactcttcttctccgtctccaaagagggcaacggagttgtagtctcattagatatgttaaatccaagaccagattgtttagtcctcggtttcg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| |||| |||||| |
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| T |
25945638 |
cccggttcactcttcttctccgtctccaaagagggcaacggagttgtagtctcattagatatgttaaatccaagaccagaatatttatccctcagtttcg |
25945539 |
T |
|
| Q |
101 |
cctcaataggatttaatataccctgctcattcttcccaagaccacctcctttataacccattttctccatcagcttcattcccattccgttataactctt |
200 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| |
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| T |
25945538 |
cctcgataggatttaatataccctgctcattcttcccaagaccacctcctttataacccattttctccatcagcttcattcccattccgttgtaattctc |
25945439 |
T |
|
| Q |
201 |
gaatttcccaacatcaactgatccctcctgacctagaccctgctcctgtttattgtcatcaaatttatcctcattaggcatgaaagttccggtggaaaca |
300 |
Q |
| |
|
|||||||||||||| |||||| |||| |||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
25945438 |
caatttcccaacatccactgattcctcgtgacctagactctgctcctgcttattgtcatcaaatttatcctcattaggcatgaaagttccggttgaaaca |
25945339 |
T |
|
| Q |
301 |
aaatttaccggtttagtaaggttttgtttcttcgaggaatcgctgtgttttct |
353 |
Q |
| |
|
||||| ||||||||||| |||| |||| || ||||||||||| ||||||||| |
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| T |
25945338 |
aaattcaccggtttagtgaggtcttgtatcctcgaggaatcgtcgtgttttct |
25945286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 233 - 400
Target Start/End: Complemental strand, 25951696 - 25951529
Alignment:
| Q |
233 |
ctagaccctgctcctgtttattgtcatcaaatttatcctcattaggcatgaaagttccggtggaaacaaaatttaccggtttagtaaggttttgtttctt |
332 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||||||| ||||||||| |
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| T |
25951696 |
ctagaccctgctcctgcttattgtcatcaaatttatcctcattaggcatgaaagttccggtagaaacgaaatttacatgtttagtaaggtcttgtttctt |
25951597 |
T |
|
| Q |
333 |
cgaggaatcgctgtgttttcttctctttatacccttgaatttcccaacatccactggtctctgctcct |
400 |
Q |
| |
|
|||||||||||||||||||||| | || ||| || ||||||||||||||||||| | | |||||||| |
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| T |
25951596 |
cgaggaatcgctgtgttttctttgcgttctactctcgaatttcccaacatccactagaccctgctcct |
25951529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 240 - 400
Target Start/End: Complemental strand, 25951842 - 25951682
Alignment:
| Q |
240 |
ctgctcctgtttattgtcatcaaatttatcctcattaggcatgaaagttccggtggaaacaaaatttaccggtttagtaaggttttgtttcttcgaggaa |
339 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||||||| |||||||||||||||| |
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| T |
25951842 |
ctgctcctgcttattgtcatcaaatttatcctcattaggcatgaaagttccggtagaaacgaaatttacatgtttagtaaggtcttgtttcttcgaggaa |
25951743 |
T |
|
| Q |
340 |
tcgctgtgttttcttctctttatacccttgaatttcccaacatccactggtctctgctcct |
400 |
Q |
| |
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||||||||||||||| | || ||| || ||||||||||||||||||| | | |||||||| |
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| T |
25951742 |
tcgctgtgttttctttgcgttctactctcgaatttcccaacatccactagaccctgctcct |
25951682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 233 - 360
Target Start/End: Complemental strand, 25951543 - 25951407
Alignment:
| Q |
233 |
ctagaccctgctcctgtttattgtcatcaaatttatcctcattaggcatgaaagttccggtggaa---------acaaaatttaccggtttagtaaggtt |
323 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| || ||||||||||||| |||||||| |
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| T |
25951543 |
ctagaccctgctcctgcttattgtcatcaaatttatcctcattaggcatgaaagttccggtagaaacgaaatttaccaaatttaccggttcagtaaggtc |
25951444 |
T |
|
| Q |
324 |
ttgtttcttcgaggaatcgctgtgttttcttctcttt |
360 |
Q |
| |
|
||||||||||||||||| |||||||||||||| |||| |
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| T |
25951443 |
ttgtttcttcgaggaatggctgtgttttcttcgcttt |
25951407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 97; Significance: 1e-47; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 2661503 - 2661261
Alignment:
| Q |
1 |
cccggttcactcttcttctccgtctccaaagagggcaacggagttgtagtctcattagatatgttaaatccaagaccagattgtttagtcctcggtttcg |
100 |
Q |
| |
|
||||||||| ||||||||||||||| ||||| |||||||| |||| || | || ||| |||||||||||||||||| | ||||| |||| |||| |
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| T |
2661503 |
cccggttcagtcttcttctccgtctgcaaagcaggcaacggcattgtggttcccttcgattcgttaaatccaagaccagaatttttagccctcaacttcg |
2661404 |
T |
|
| Q |
101 |
cctcaataggatttaatataccctgctcattcttcccaagaccacctcctttataacccattttctccatcagcttcattcccattccgt---tataact |
197 |
Q |
| |
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| |||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||||| | |||||||||||| ||||| | ||| ||| |
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|
| T |
2661403 |
cttcaataggatttaaaataccctgctcattcttcccaagaccaccccctttataacccatcttctcaagcagcttcattccaattccctttgtatgact |
2661304 |
T |
|
| Q |
198 |
cttgaatttcccaacatcaactgatccctcctgacctagaccc |
240 |
Q |
| |
|
|| ||||||||||||||| || || ||||||||||||| |||| |
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|
| T |
2661303 |
ctcgaatttcccaacatccacagacccctcctgacctaaaccc |
2661261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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