View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1137_low_81 (Length: 403)
Name: NF1137_low_81
Description: NF1137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1137_low_81 |
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Alignment Details
Target: chr3 (Bit Score: 251; Significance: 1e-139; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 320
Target Start/End: Complemental strand, 19901322 - 19901004
Alignment:
| Q |
1 |
aaattaattaagcctgtgcacacagcaaaaaatagtaatggtgacttataataaaggatattattcgacatcccattaacataacttaattgatagagat |
100 |
Q |
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| T |
19901322 |
aaattaattaagcctgtgcacacagcaaaaaatagtaatggtgacttataataaaggatattagt-gatatcccattaacataacttaattgatagagat |
19901224 |
T |
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| Q |
101 |
gttgcagtatgaaggaattggaattcgaactcagaatgtctcattatatttatttatcttgagagatgaattttaagatactaagctacatgacaacaac |
200 |
Q |
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| T |
19901223 |
gttgcagtatgaaggaattgggattcaaactcagaatgtctcattatatttatttatcttgagagattaattttaagatactaagctacatgacaacaat |
19901124 |
T |
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| Q |
201 |
nnnnnnngtaatatagtgatgtatgattcgtgagcatatttttcaccattaaatcaataagtcacatcatatatatctcaattgatctattgagacttat |
300 |
Q |
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| T |
19901123 |
aaaaaaagtaatatattgatgtatgattcgtgagcatatttttcaccattaaatcaataagtcacatcatatatatctcacttaatctattgagacttat |
19901024 |
T |
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| Q |
301 |
caaattttgtatctcgcttg |
320 |
Q |
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||||||||||||||| |||| |
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| T |
19901023 |
caaattttgtatctcacttg |
19901004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 274 - 391
Target Start/End: Complemental strand, 19901014 - 19900897
Alignment:
| Q |
274 |
tatctcaattgatctattgagacttatcaaattttgtatctcgcttgtgtaacatgctggaaggtcacaaatttaatcatgtaaaattaaaggttgagaa |
373 |
Q |
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| T |
19901014 |
tatctcacttgatctattgagacttatcaaattttgtatctcgcttgtgtaacatgctggaaggtcacaaatttactcatgtaaaattaaaagttgagaa |
19900915 |
T |
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| Q |
374 |
gttcaatatacataccta |
391 |
Q |
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| T |
19900914 |
gttcaatatacataccta |
19900897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 339 - 389
Target Start/End: Original strand, 20083039 - 20083089
Alignment:
| Q |
339 |
cacaaatttaatcatgtaaaattaaaggttgagaagttcaatatacatacc |
389 |
Q |
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| T |
20083039 |
cacaaattaaatcatgtaaaattaaaggttgagttgttcaatatacatacc |
20083089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 341 - 389
Target Start/End: Original strand, 20112059 - 20112107
Alignment:
| Q |
341 |
caaatttaatcatgtaaaattaaaggttgagaagttcaatatacatacc |
389 |
Q |
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| T |
20112059 |
caaattaaatcatgtaaaaataaaggttaagttgttcaatatacatacc |
20112107 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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