View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1137_low_82 (Length: 402)

Name: NF1137_low_82
Description: NF1137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1137_low_82
NF1137_low_82
[»] chr1 (18 HSPs)
chr1 (221-392)||(18325204-18325373)
chr1 (52-224)||(18325494-18325666)
chr1 (228-314)||(3887339-3887425)
chr1 (228-283)||(47307506-47307561)
chr1 (255-317)||(22548187-22548249)
chr1 (230-314)||(4347052-4347136)
chr1 (254-317)||(213169-213232)
chr1 (318-385)||(15478121-15478188)
chr1 (238-317)||(47899371-47899450)
chr1 (232-302)||(12655356-12655426)
chr1 (230-292)||(13344851-13344913)
chr1 (260-314)||(43541585-43541639)
chr1 (256-317)||(3515943-3516004)
chr1 (363-392)||(6744694-6744723)
chr1 (228-293)||(26253026-26253091)
chr1 (256-317)||(45557437-45557498)
chr1 (317-385)||(8381881-8381949)
chr1 (231-295)||(38512430-38512494)
[»] chr7 (10 HSPs)
chr7 (230-316)||(40491688-40491774)
chr7 (223-286)||(35812411-35812474)
chr7 (318-385)||(15050191-15050257)
chr7 (318-385)||(38123768-38123835)
chr7 (326-392)||(45369068-45369134)
chr7 (228-317)||(42481778-42481867)
chr7 (233-314)||(28070813-28070894)
chr7 (237-294)||(34536755-34536812)
chr7 (273-318)||(45823310-45823355)
chr7 (258-314)||(36021258-36021314)
[»] chr4 (19 HSPs)
chr4 (223-297)||(48575487-48575561)
chr4 (228-314)||(24364083-24364169)
chr4 (236-292)||(38740287-38740343)
chr4 (230-312)||(43868246-43868328)
chr4 (237-314)||(5025575-5025652)
chr4 (256-300)||(12926922-12926966)
chr4 (260-314)||(17897799-17897853)
chr4 (230-315)||(33560461-33560545)
chr4 (326-385)||(1099742-1099801)
chr4 (227-281)||(12224465-12224519)
chr4 (237-314)||(21592545-21592622)
chr4 (256-301)||(24370578-24370623)
chr4 (326-387)||(26617745-26617806)
chr4 (228-277)||(34943436-34943485)
chr4 (253-314)||(47509857-47509918)
chr4 (324-385)||(50358134-50358195)
chr4 (255-315)||(8283275-8283335)
chr4 (260-300)||(23335265-23335305)
chr4 (254-317)||(53158947-53159011)
[»] chr2 (19 HSPs)
chr2 (227-316)||(6948445-6948534)
chr2 (315-387)||(43717237-43717309)
chr2 (230-317)||(11759747-11759834)
chr2 (230-314)||(12110937-12111021)
chr2 (318-385)||(7629760-7629827)
chr2 (242-317)||(37745786-37745861)
chr2 (253-311)||(22447527-22447585)
chr2 (253-298)||(7630538-7630583)
chr2 (228-313)||(17220417-17220502)
chr2 (324-385)||(40582653-40582714)
chr2 (320-384)||(1976986-1977050)
chr2 (236-314)||(3602420-3602499)
chr2 (230-297)||(36307075-36307142)
chr2 (236-295)||(45000418-45000477)
chr2 (236-314)||(38129404-38129482)
chr2 (233-270)||(3654787-3654824)
chr2 (324-385)||(37420317-37420378)
chr2 (230-314)||(1763283-1763367)
chr2 (324-384)||(37649595-37649655)
[»] chr6 (17 HSPs)
chr6 (238-314)||(10054955-10055031)
chr6 (230-317)||(1500010-1500097)
chr6 (230-314)||(19260774-19260858)
chr6 (234-319)||(10564807-10564893)
chr6 (324-385)||(34620790-34620851)
chr6 (324-385)||(34748227-34748288)
chr6 (235-286)||(9043723-9043774)
chr6 (255-313)||(3002827-3002885)
chr6 (318-392)||(7262969-7263043)
chr6 (234-295)||(3525039-3525100)
chr6 (252-317)||(14391015-14391080)
chr6 (245-314)||(20871626-20871695)
chr6 (228-265)||(25208734-25208771)
chr6 (318-387)||(29240570-29240639)
chr6 (279-315)||(10755399-10755435)
chr6 (348-392)||(19260996-19261040)
chr6 (318-374)||(19601715-19601771)
[»] chr3 (20 HSPs)
chr3 (228-314)||(24916592-24916678)
chr3 (319-385)||(3776438-3776504)
chr3 (230-292)||(30958147-30958209)
chr3 (230-292)||(30973959-30974021)
chr3 (227-312)||(39657963-39658048)
chr3 (324-385)||(52925731-52925792)
chr3 (236-292)||(31766160-31766216)
chr3 (231-314)||(25129430-25129513)
chr3 (242-293)||(49158642-49158693)
chr3 (318-384)||(3845233-3845299)
chr3 (230-314)||(42644316-42644401)
chr3 (227-314)||(27825270-27825357)
chr3 (235-294)||(49633997-49634056)
chr3 (228-314)||(25181262-25181348)
chr3 (254-300)||(44771862-44771908)
chr3 (236-289)||(584709-584762)
chr3 (223-292)||(41115275-41115344)
chr3 (228-285)||(48089610-48089667)
chr3 (228-300)||(38626764-38626836)
chr3 (234-294)||(53567990-53568050)
[»] chr5 (20 HSPs)
chr5 (318-381)||(15368141-15368204)
chr5 (230-314)||(2868313-2868397)
chr5 (231-314)||(40910881-40910964)
chr5 (228-277)||(5465398-5465447)
chr5 (262-315)||(10373024-10373077)
chr5 (330-387)||(28973768-28973825)
chr5 (324-385)||(29922798-29922859)
chr5 (230-286)||(14299436-14299492)
chr5 (324-383)||(3043126-3043185)
chr5 (235-314)||(7328524-7328603)
chr5 (223-286)||(14067032-14067095)
chr5 (318-385)||(34250471-34250538)
chr5 (233-299)||(14671137-14671203)
chr5 (228-277)||(6988228-6988277)
chr5 (233-286)||(29923013-29923066)
chr5 (236-317)||(35108355-35108436)
chr5 (230-279)||(43438590-43438639)
chr5 (236-272)||(1145039-1145075)
chr5 (254-314)||(6414251-6414311)
chr5 (273-317)||(8591704-8591748)
[»] scaffold0172 (1 HSPs)
scaffold0172 (230-314)||(15220-15304)
[»] chr8 (18 HSPs)
chr8 (245-317)||(2031884-2031956)
chr8 (230-317)||(10368075-10368162)
chr8 (230-300)||(37159381-37159451)
chr8 (269-314)||(34957018-34957063)
chr8 (237-314)||(41891782-41891859)
chr8 (230-314)||(36779453-36779537)
chr8 (230-286)||(38516360-38516416)
chr8 (236-278)||(1373107-1373149)
chr8 (236-314)||(41408258-41408336)
chr8 (319-392)||(11038081-11038154)
chr8 (256-301)||(18355753-18355798)
chr8 (228-317)||(32994128-32994217)
chr8 (318-383)||(35495158-35495223)
chr8 (230-294)||(35550283-35550347)
chr8 (228-264)||(2778354-2778390)
chr8 (236-300)||(5400118-5400182)
chr8 (230-294)||(10552892-10552956)
chr8 (236-316)||(38335751-38335830)
[»] scaffold1191 (1 HSPs)
scaffold1191 (253-314)||(55-116)
[»] scaffold0571 (1 HSPs)
scaffold0571 (253-314)||(7825-7886)
[»] scaffold0248 (1 HSPs)
scaffold0248 (228-277)||(13275-13324)
[»] scaffold0361 (1 HSPs)
scaffold0361 (318-376)||(14242-14300)


Alignment Details
Target: chr1 (Bit Score: 149; Significance: 1e-78; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 221 - 392
Target Start/End: Complemental strand, 18325373 - 18325204
Alignment:
Q  221 agaaactattttacattcaactcacttttatataaaatcaattttacaaaaccaattcattcaaaaccaatttttgtcaccgtagaaccaaacatacgtt 320  Q
    |||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||| |||    
T  18325373 agaaaccattttacattcaactcacttttatgtaaaatcaattttacaaaaccaattcat--aaaaccaatttttgtcaccgtagaaccaaacatatgtt 18325276  T
Q  321 tgtttccacttttggaggagacaaaagtgattccagatgtgaagaattgattttgacatgtttggattttct 392  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18325275 tgtttccacttttggaggagacaaaagtgattccagatgtgaagaattgattttgacatgtttggattttct 18325204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 52 - 224
Target Start/End: Complemental strand, 18325666 - 18325494
Alignment:
Q  52 atacttcccgatacacgcgagaggatgctggcaacagaagtaactgcactatggaggtaatttcttttttctgtactgagtcttagcctatacttggttc 151  Q
    |||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || ||||||| |||||||    
T  18325666 atacttcctgatacacgcgagaggatgctggcaacagaagtaactgcgctatggaggtaatttcttttttctgtactgagtgttggcctatatttggttc 18325567  T
Q  152 aatgtttgtagcagccggaatcaattctaaaggtgtaaaattttgccatgtttggttgctctctcgagtagaa 224  Q
    ||| |||||||| || |||||  ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18325566 aatatttgtagctgctggaattgattctaaaggtgtaaaattttgccatgtttggttgctctctcgagtagaa 18325494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 228 - 314
Target Start/End: Complemental strand, 3887425 - 3887339
Alignment:
Q  228 attttacattcaactcacttttatataaaatcaattttacaaaaccaattcattcaaaa-ccaatttttgtcaccgtagaaccaaaca 314  Q
    |||||||||| ||||||| ||||| |||||||| ||||||||||||||||||||||||| | |||||  ||||||| |||||||||||    
T  3887425 attttacattgaactcacctttatctaaaatca-ttttacaaaaccaattcattcaaaatcaaatttaagtcaccgcagaaccaaaca 3887339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 228 - 283
Target Start/End: Original strand, 47307506 - 47307561
Alignment:
Q  228 attttacattcaactcacttttatataaaatcaattttacaaaaccaattcattca 283  Q
    |||||||||||||||||||||||  |||| ||||||||| |||| |||||||||||    
T  47307506 attttacattcaactcacttttaactaaagtcaattttataaaatcaattcattca 47307561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 255 - 317
Target Start/End: Complemental strand, 22548249 - 22548187
Alignment:
Q  255 aaatcaattttacaaaaccaattcattcaaaaccaatttttgtcaccgtagaaccaaacatac 317  Q
    ||||||||||||||||| ||||||| | |||| |||||||| |||||| | ||||||||||||    
T  22548249 aaatcaattttacaaaatcaattcacttaaaatcaatttttatcaccgcaaaaccaaacatac 22548187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 230 - 314
Target Start/End: Original strand, 4347052 - 4347136
Alignment:
Q  230 tttacattcaactcacttttatataaaatcaattttacaaaaccaattcattcaaaaccaatttttgtcaccgtagaaccaaaca 314  Q
    |||||||||||||||||||||   |||||||||| ||||||| ||||||   ||||| ||||||||  ||||| | |||||||||    
T  4347052 tttacattcaactcacttttaaccaaaatcaattctacaaaatcaattctaccaaaatcaattttttccaccgcacaaccaaaca 4347136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 254 - 317
Target Start/End: Complemental strand, 213232 - 213169
Alignment:
Q  254 aaaatcaattttacaaaaccaattcattcaaaaccaatttttgtcaccgtagaaccaaacatac 317  Q
    ||||| ||||||| | || ||||| | |||||| ||||||||||||||| ||||||||||||||    
T  213232 aaaattaattttatagaatcaatttaatcaaaatcaatttttgtcaccgcagaaccaaacatac 213169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 318 - 385
Target Start/End: Complemental strand, 15478188 - 15478121
Alignment:
Q  318 gtttgtttccacttttggaggagacaaaagtgattccagatgtgaagaattgattttgacatgtttgg 385  Q
    ||||| ||||||||||||||||| ||||  |||||  ||  ||| |||||||||||||||||||||||    
T  15478188 gtttggttccacttttggaggagccaaacttgattttagcggtgtagaattgattttgacatgtttgg 15478121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 238 - 317
Target Start/End: Original strand, 47899371 - 47899450
Alignment:
Q  238 caactcacttttatataaaatcaattttacaaaaccaattcattcaaaaccaatttttgtcaccgtagaaccaaacatac 317  Q
    |||||||||||||   | |||||||||||||||| ||||||| |||||| ||||| ||||||  ||| ||| ||||||||    
T  47899371 caactcacttttagtaagaatcaattttacaaaatcaattcactcaaaatcaattcttgtcaaagtataacaaaacatac 47899450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 232 - 302
Target Start/End: Original strand, 12655356 - 12655426
Alignment:
Q  232 tacattcaactcacttttatataaaatcaattttacaaaaccaattcattcaaaaccaatttttgtcaccg 302  Q
    |||||||||||| ||||||  |||||||||||| ||| || ||||||||  |||| | |||||||||||||    
T  12655356 tacattcaactcgcttttaagtaaaatcaatttcacataatcaattcatctaaaatctatttttgtcaccg 12655426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 230 - 292
Target Start/End: Original strand, 13344851 - 13344913
Alignment:
Q  230 tttacattcaactcacttttatataaaatcaattttacaaaaccaattcattcaaaaccaatt 292  Q
    ||||| |||||||||||||||   |||||||||| ||||||| ||||||| |||||| |||||    
T  13344851 tttacgttcaactcacttttaaccaaaatcaattctacaaaatcaattcaatcaaaatcaatt 13344913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 260 - 314
Target Start/End: Complemental strand, 43541639 - 43541585
Alignment:
Q  260 aattttacaaaaccaattcattcaaaaccaatttttgtcaccgtagaaccaaaca 314  Q
    ||||||||| || ||||||||||| || ||||||||||||||| | |||||||||    
T  43541639 aattttacagaatcaattcattcagaatcaatttttgtcaccgcataaccaaaca 43541585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 317
Target Start/End: Original strand, 3515943 - 3516004
Alignment:
Q  256 aatcaattttacaaaaccaattcattcaaaaccaatttttgtcaccgtagaaccaaacatac 317  Q
    ||||||||||||| || ||||||| |||||||||||| |  |||||| | ||||||||||||    
T  3515943 aatcaattttacataatcaattcactcaaaaccaattctaatcaccgcataaccaaacatac 3516004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 363 - 392
Target Start/End: Original strand, 6744694 - 6744723
Alignment:
Q  363 agaattgattttgacatgtttggattttct 392  Q
    ||||||||||||||||||||||||||||||    
T  6744694 agaattgattttgacatgtttggattttct 6744723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 293
Target Start/End: Complemental strand, 26253091 - 26253026
Alignment:
Q  228 attttacattcaactcacttttatataaaatcaattttacaaaaccaattcattcaaaaccaattt 293  Q
    ||||||| ||||||||| ||||| |   |||| |||||||| || |||||||||||||||||||||    
T  26253091 attttactttcaactcatttttaaaccgaatcgattttacagaatcaattcattcaaaaccaattt 26253026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 317
Target Start/End: Original strand, 45557437 - 45557498
Alignment:
Q  256 aatcaattttacaaaaccaattcattcaaaaccaatttttgtcaccgtagaaccaaacatac 317  Q
    ||||||||||||| || ||||| |||||||| ||||||||| ||| | | ||||||||||||    
T  45557437 aatcaattttacacaatcaatttattcaaaatcaatttttgccacagcataaccaaacatac 45557498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 317 - 385
Target Start/End: Original strand, 8381881 - 8381949
Alignment:
Q  317 cgtttgtttccacttttggaggagacaaaagtgattccagatgtgaagaattgattttgacatgtttgg 385  Q
    |||||| ||| |||| |||||||| ||||| |||||| ||| ||  | |||||||||||||||||||||    
T  8381881 cgtttggttcgacttctggaggagtcaaaattgattctagaggtataaaattgattttgacatgtttgg 8381949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 231 - 295
Target Start/End: Original strand, 38512430 - 38512494
Alignment:
Q  231 ttacattcaactcacttttatataaaatcaattttacaaaaccaattcattcaaaaccaattttt 295  Q
    ||||||||||||||||| |||  | ||| |||||||||||| ||||||| | |||| ||||||||    
T  38512430 ttacattcaactcacttatatcaagaattaattttacaaaatcaattcacttaaaatcaattttt 38512494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 230 - 316
Target Start/End: Original strand, 40491688 - 40491774
Alignment:
Q  230 tttacattcaactcacttttatataaaatcaattttacaaaaccaattcattcaaaaccaatttttgtcaccgtagaaccaaacata 316  Q
    ||||| |||||||||||||||   ||||||||||||||| || ||||||| |||||| ||||| ||||||||| |||||||||||||    
T  40491688 tttaccttcaactcacttttagtcaaaatcaattttacagaatcaattcactcaaaatcaattcttgtcaccgcagaaccaaacata 40491774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 223 - 286
Target Start/End: Original strand, 35812411 - 35812474
Alignment:
Q  223 aaactattttacattcaactcacttttatataaaatcaattttacaaaaccaattcattcaaaa 286  Q
    |||||||||||||||||||| | |||| |  |||||||||||||||||| ||||||||||||||    
T  35812411 aaactattttacattcaactaattttttttcaaaatcaattttacaaaatcaattcattcaaaa 35812474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 318 - 385
Target Start/End: Original strand, 15050191 - 15050257
Alignment:
Q  318 gtttgtttccacttttggaggagacaaaagtgattccagatgtgaagaattgattttgacatgtttgg 385  Q
    ||||| ||||||||| ||||||| ||||| |||||| ||| ||||||||||||||||||| |||||||    
T  15050191 gtttggttccacttt-ggaggagccaaaattgattctagaagtgaagaattgattttgacctgtttgg 15050257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 318 - 385
Target Start/End: Complemental strand, 38123835 - 38123768
Alignment:
Q  318 gtttgtttccacttttggaggagacaaaagtgattccagatgtgaagaattgattttgacatgtttgg 385  Q
    ||||| ||||||||||||||||| ||||| |||||| |||  || |||||||||||| ||||||||||    
T  38123835 gtttggttccacttttggaggagccaaaattgattctagagatgtagaattgattttaacatgtttgg 38123768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 326 - 392
Target Start/End: Original strand, 45369068 - 45369134
Alignment:
Q  326 ccacttttggaggagacaaaagtgattccagatgtgaagaattgattttgacatgtttggattttct 392  Q
    ||||||||| ||||||||||| ||||| |||| ||| ||| |||||||||| |||||||||| ||||    
T  45369068 ccacttttgaaggagacaaaattgatttcagaggtgtagatttgattttgagatgtttggatgttct 45369134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 228 - 317
Target Start/End: Complemental strand, 42481867 - 42481778
Alignment:
Q  228 attttacattcaactcacttttatataaaatcaattttacaaaaccaattcattcaaaaccaatttttgtcaccgtagaaccaaacatac 317  Q
    |||||||||||||||||||||| |  | ||||||||||||| || ||||||| | |||| ||||| || |||||| || | |||||||||    
T  42481867 attttacattcaactcactttttttcagaatcaattttacataatcaattcacttaaaatcaattcttttcaccgcaggagcaaacatac 42481778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 314
Target Start/End: Original strand, 28070813 - 28070894
Alignment:
Q  233 acattcaactcacttttatataaaatcaattttacaaaaccaattcattcaaaaccaatttttgtcaccgtagaaccaaaca 314  Q
    |||||||||||| ||| |  | |||||||||||||||||  |||| |||||||| |||| || ||||||| | |||||||||    
T  28070813 acattcaactcaatttcagttgaaatcaattttacaaaattaattaattcaaaatcaatattcgtcaccgcataaccaaaca 28070894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 294
Target Start/End: Original strand, 34536755 - 34536812
Alignment:
Q  237 tcaactcacttttatataaaatcaattttacaaaaccaattcattcaaaaccaatttt 294  Q
    |||||||||||||||  ||||| ||||||| | || |||||||||||||| |||||||    
T  34536755 tcaactcacttttattcaaaattaattttatataatcaattcattcaaaatcaatttt 34536812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 273 - 318
Target Start/End: Original strand, 45823310 - 45823355
Alignment:
Q  273 caattcattcaaaaccaatttttgtcaccgtagaaccaaacatacg 318  Q
    ||||||| |||||| ||||||||||||||||  |||||||||||||    
T  45823310 caattcaatcaaaatcaatttttgtcaccgtgtaaccaaacatacg 45823355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 258 - 314
Target Start/End: Complemental strand, 36021314 - 36021258
Alignment:
Q  258 tcaattttacaaaaccaattcattcaaaaccaatttttgtcaccgtagaaccaaaca 314  Q
    ||||||||  |||| ||||| | |||||| |||||||||||||| ||||||||||||    
T  36021314 tcaattttgtaaaatcaatttagtcaaaatcaatttttgtcaccctagaaccaaaca 36021258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 223 - 297
Target Start/End: Original strand, 48575487 - 48575561
Alignment:
Q  223 aaactattttacattcaactcacttttatataaaatcaattttacaaaaccaattcattcaaaaccaatttttgt 297  Q
    |||| ||||||||||||||||| ||||||  |||||||||||||||||| ||||||||||||||  |||||||||    
T  48575487 aaaccattttacattcaactcatttttatcaaaaatcaattttacaaaatcaattcattcaaaattaatttttgt 48575561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 228 - 314
Target Start/End: Complemental strand, 24364169 - 24364083
Alignment:
Q  228 attttacattcaactcacttttatataaaatcaattttacaaaaccaattcattcaaaaccaatttttgtcaccgtagaaccaaaca 314  Q
    ||||||||||||| |||||||||   | ||||||||||||| || |||||||||||||| |||||||||||| | || |||||||||    
T  24364169 attttacattcaaatcacttttagtgagaatcaattttacataatcaattcattcaaaatcaatttttgtcatcataaaaccaaaca 24364083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 236 - 292
Target Start/End: Complemental strand, 38740343 - 38740287
Alignment:
Q  236 ttcaactcacttttatataaaatcaattttacaaaaccaattcattcaaaaccaatt 292  Q
    ||||||||||||||||  |||||||||||||||||| |||||||||||||| |||||    
T  38740343 ttcaactcacttttatccaaaatcaattttacaaaatcaattcattcaaaatcaatt 38740287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 230 - 312
Target Start/End: Original strand, 43868246 - 43868328
Alignment:
Q  230 tttacattcaactcacttttatataaaatcaattttacaaaaccaattcattcaaaaccaatttttgtcaccgtagaaccaaa 312  Q
    ||||| ||||||| |||||||  || ||| |||||||||||| |||||||||||||| |||||||| | ||| ||||||||||    
T  43868246 tttactttcaacttacttttaactagaattaattttacaaaatcaattcattcaaaatcaatttttataaccatagaaccaaa 43868328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 237 - 314
Target Start/End: Original strand, 5025575 - 5025652
Alignment:
Q  237 tcaactcacttttatataaaatcaattttacaaaaccaattcattcaaaaccaatttttgtcaccgtagaaccaaaca 314  Q
    ||||||||||| ||  ||||||||||| ||||||| ||||||| |||||| ||||||| ||||||| | |||||||||    
T  5025575 tcaactcacttctaactaaaatcaattctacaaaatcaattcaatcaaaatcaattttagtcaccgcataaccaaaca 5025652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 256 - 300
Target Start/End: Complemental strand, 12926966 - 12926922
Alignment:
Q  256 aatcaattttacaaaaccaattcattcaaaaccaatttttgtcac 300  Q
    ||||||||||| ||||||||||||||||||| |||||||||||||    
T  12926966 aatcaattttataaaaccaattcattcaaaatcaatttttgtcac 12926922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 260 - 314
Target Start/End: Complemental strand, 17897853 - 17897799
Alignment:
Q  260 aattttacaaaaccaattcattcaaaaccaatttttgtcaccgtagaaccaaaca 314  Q
    ||||| |||||| ||||||| |||||| ||||||||||||||| |||||||||||    
T  17897853 aatttgacaaaatcaattcactcaaaatcaatttttgtcaccgcagaaccaaaca 17897799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 230 - 315
Target Start/End: Complemental strand, 33560545 - 33560461
Alignment:
Q  230 tttacattcaactcacttttatataaaatcaattttacaaaaccaattcattcaaaaccaatttttgtcaccgtagaaccaaacat 315  Q
    ||||||||||||||||||| | |  ||||| ||||||| |||  ||||||||||||| || ||||||||||| |||||| ||||||    
T  33560545 tttacattcaactcactttca-agcaaatccattttacgaaattaattcattcaaaatcattttttgtcaccttagaactaaacat 33560461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 326 - 385
Target Start/End: Original strand, 1099742 - 1099801
Alignment:
Q  326 ccacttttggaggagacaaaagtgattccagatgtgaagaattgattttgacatgtttgg 385  Q
    ||||||||||||||||||||| |||||| |||  || |||||||||||||| || |||||    
T  1099742 ccacttttggaggagacaaaattgattctagagatgcagaattgattttgaaatatttgg 1099801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 227 - 281
Target Start/End: Original strand, 12224465 - 12224519
Alignment:
Q  227 tattttacattcaactcacttttatataaaatcaattttacaaaaccaattcatt 281  Q
    |||||| ||||||||| |||||||  |||||| |||||||||||| |||||||||    
T  12224465 tattttgcattcaacttacttttaactaaaataaattttacaaaatcaattcatt 12224519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 314
Target Start/End: Original strand, 21592545 - 21592622
Alignment:
Q  237 tcaactcacttttatataaaatcaattttacaaaaccaattcattcaaaaccaatttttgtcaccgtagaaccaaaca 314  Q
    ||||||||||||||  |  ||||||| ||| |||| |||||||||||||| ||| |||||| |||| | |||||||||    
T  21592545 tcaactcacttttagttggaatcaatcttataaaatcaattcattcaaaatcaaattttgttaccgcaaaaccaaaca 21592622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 301
Target Start/End: Original strand, 24370578 - 24370623
Alignment:
Q  256 aatcaattttacaaaaccaattcattcaaaaccaatttttgtcacc 301  Q
    |||||||||||||||| ||||| |||||||| ||| ||||||||||    
T  24370578 aatcaattttacaaaatcaattaattcaaaatcaacttttgtcacc 24370623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 326 - 387
Target Start/End: Complemental strand, 26617806 - 26617745
Alignment:
Q  326 ccacttttggaggagacaaaagtgattccagatgtgaagaattgattttgacatgtttggat 387  Q
    ||||||||||| | |  |||| |||||| ||||||| | |||||||||||||||||||||||    
T  26617806 ccacttttggatgtgctaaaattgattctagatgtgtaaaattgattttgacatgtttggat 26617745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 277
Target Start/End: Original strand, 34943436 - 34943485
Alignment:
Q  228 attttacattcaactcacttttatataaaatcaattttacaaaaccaatt 277  Q
    ||||||||||||||||| |||||| |||||| ||||||| |||| |||||    
T  34943436 attttacattcaactcaattttatctaaaattaattttataaaatcaatt 34943485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 314
Target Start/End: Complemental strand, 47509918 - 47509857
Alignment:
Q  253 taaaatcaattttacaaaaccaattcattcaaaaccaatttttgtcaccgtagaaccaaaca 314  Q
    |||||||||||||||||||  ||||| || ||||||||||||| |||||  | |||||||||    
T  47509918 taaaatcaattttacaaaattaattcttttaaaaccaatttttatcacctcaaaaccaaaca 47509857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 324 - 385
Target Start/End: Complemental strand, 50358195 - 50358134
Alignment:
Q  324 ttccacttttggaggagacaaaagtgattccagatgtgaagaattgattttgacatgtttgg 385  Q
    |||||||| ||| ||||| |||| |||||| ||| ||| |||||||||||||||||| ||||    
T  50358195 ttccacttctggtggagaaaaaattgattctagaggtgtagaattgattttgacatgcttgg 50358134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 255 - 315
Target Start/End: Complemental strand, 8283335 - 8283275
Alignment:
Q  255 aaatcaattttacaaaaccaattcattcaaaaccaatttttgtcaccgtagaaccaaacat 315  Q
    |||||||||||| |||  |||||||||||||| ||||||| ||||||| | || |||||||    
T  8283335 aaatcaattttaaaaactcaattcattcaaaatcaattttggtcaccgcacaatcaaacat 8283275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 260 - 300
Target Start/End: Complemental strand, 23335305 - 23335265
Alignment:
Q  260 aattttacaaaaccaattcattcaaaaccaatttttgtcac 300  Q
    |||||||||||| || ||||||||||| |||||||||||||    
T  23335305 aattttacaaaatcatttcattcaaaatcaatttttgtcac 23335265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 254 - 317
Target Start/End: Complemental strand, 53159011 - 53158947
Alignment:
Q  254 aaaatcaattttacaaaaccaattcattcaaaaccaa-tttttgtcaccgtagaaccaaacatac 317  Q
    |||||||||||||||  | ||||||| |||||| ||| |||||||||||| | ||||||||||||    
T  53159011 aaaatcaattttacatgatcaattcactcaaaatcaactttttgtcaccgcaaaaccaaacatac 53158947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 4e-17; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 227 - 316
Target Start/End: Complemental strand, 6948534 - 6948445
Alignment:
Q  227 tattttacattcaactcacttttatataaaatcaattttacaaaaccaattcattcaaaaccaatttttgtcaccgtagaaccaaacata 316  Q
    |||||||| ||||||||| ||| |   ||||||||||||||| ||||||||||||||||| ||| | ||||| |||||||||||||||||    
T  6948534 tattttaccttcaactcaatttcaatcaaaatcaattttacataaccaattcattcaaaatcaactattgtctccgtagaaccaaacata 6948445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 315 - 387
Target Start/End: Original strand, 43717237 - 43717309
Alignment:
Q  315 tacgtttgtttccacttttggaggagacaaaagtgattccagatgtgaagaattgattttgacatgtttggat 387  Q
    |||||||| || |||||||||||| |  |||| |||||| ||||||| |||||||||||||||||||||||||    
T  43717237 tacgtttggtttcacttttggaggtgttaaaattgattctagatgtgtagaattgattttgacatgtttggat 43717309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 230 - 317
Target Start/End: Complemental strand, 11759834 - 11759747
Alignment:
Q  230 tttacattcaactcacttttatataaaatcaattttacaaaaccaattcattcaaaaccaatttttgtcaccgtagaaccaaacatac 317  Q
    ||||| |||||||||||||||   |||||||||||||||||| ||||||| |||||  |||||||| |||||  | ||||||||||||    
T  11759834 tttaccttcaactcacttttaatcaaaatcaattttacaaaatcaattcactcaaactcaatttttttcacctcataaccaaacatac 11759747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 230 - 314
Target Start/End: Original strand, 12110937 - 12111021
Alignment:
Q  230 tttacattcaactcacttttatataaaatcaattttacaaaaccaattcattcaaaaccaatttttgtcaccgtagaaccaaaca 314  Q
    |||| ||||||||||||||||   ||||||||||| |||||| ||||||  |||||| ||||||| ||||||| | |||||||||    
T  12110937 tttatattcaactcacttttaaccaaaatcaatttgacaaaatcaattctatcaaaatcaattttcgtcaccgcacaaccaaaca 12111021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 318 - 385
Target Start/End: Original strand, 7629760 - 7629827
Alignment:
Q  318 gtttgtttccacttttggaggagacaaaagtgattccagatgtgaagaattgattttgacatgtttgg 385  Q
    ||||| ||||||||||||||||| ||| | |||||| ||| ||| ||||||||||||| |||||||||    
T  7629760 gtttggttccacttttggaggagccaagattgattctagaggtgtagaattgattttgtcatgtttgg 7629827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 242 - 317
Target Start/End: Complemental strand, 37745861 - 37745786
Alignment:
Q  242 tcacttttatataaaatcaattttacaaaaccaattcattcaaaaccaatttttgtcaccgtagaaccaaacatac 317  Q
    ||||||||| | ||||||||||||||| || ||||||| |||||| ||||| || |||||| | ||||||||||||    
T  37745861 tcacttttagacaaaatcaattttacataatcaattcactcaaaatcaattattatcaccgcaaaaccaaacatac 37745786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 253 - 311
Target Start/End: Original strand, 22447527 - 22447585
Alignment:
Q  253 taaaatcaattttacaaaaccaattcattcaaaaccaatttttgtcaccgtagaaccaa 311  Q
    ||||||||||||||| ||| |||||||||||| | ||| |||||||||||||| |||||    
T  22447527 taaaatcaattttacgaaagcaattcattcaatatcaaattttgtcaccgtagtaccaa 22447585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 253 - 298
Target Start/End: Original strand, 7630538 - 7630583
Alignment:
Q  253 taaaatcaattttacaaaaccaattcattcaaaaccaatttttgtc 298  Q
    ||||||||||||||||||| |||||||||||||| |||| ||||||    
T  7630538 taaaatcaattttacaaaatcaattcattcaaaatcaatgtttgtc 7630583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 228 - 313
Target Start/End: Original strand, 17220417 - 17220502
Alignment:
Q  228 attttacattcaactcacttttatataaaatcaattttacaaaaccaattcattcaaaaccaatttttgtcaccgtagaaccaaac 313  Q
    |||||||||| || |||| ||||  |||| ||||||||||||||| |||||| |||||| ||||||| | |||  |||||||||||    
T  17220417 attttacattaaaatcacatttaactaaagtcaattttacaaaactaattcaatcaaaatcaattttagccactatagaaccaaac 17220502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 324 - 385
Target Start/End: Original strand, 40582653 - 40582714
Alignment:
Q  324 ttccacttttggaggagacaaaagtgattccagatgtgaagaattgattttgacatgtttgg 385  Q
    ||||||||||||| ||| ||||| |||||| ||| ||| |||||||||||| ||||||||||    
T  40582653 ttccacttttggaagagccaaaattgattctagaggtgtagaattgattttaacatgtttgg 40582714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 320 - 384
Target Start/End: Complemental strand, 1977050 - 1976986
Alignment:
Q  320 ttgtttccacttttggaggagacaaaagtgattccagatgtgaagaattgattttgacatgtttg 384  Q
    ||||||||||||||||||||| ||||| |||||| ||| ||    ||||||||||||||||||||    
T  1977050 ttgtttccacttttggaggagccaaaattgattctagaggtttgaaattgattttgacatgtttg 1976986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 236 - 314
Target Start/End: Complemental strand, 3602499 - 3602420
Alignment:
Q  236 ttcaactcacttttatataaaatcaatttta-caaaaccaattcattcaaaaccaatttttgtcaccgtagaaccaaaca 314  Q
    ||||||||||||||| | |||||||||| || ||||| ||||||| | |||| |||||||  |||||| |||||||||||    
T  3602499 ttcaactcacttttagacaaaatcaattctatcaaaatcaattcagtaaaaatcaattttcatcaccgcagaaccaaaca 3602420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 230 - 297
Target Start/End: Original strand, 36307075 - 36307142
Alignment:
Q  230 tttacattcaactcacttttatataaaatcaattttacaaaaccaattcattcaaaaccaatttttgt 297  Q
    ||||| ||||||||||||||||  | ||||||||||||| || ||||||| |||| | ||||||||||    
T  36307075 tttacgttcaactcacttttatccataatcaattttacataatcaattcactcaagatcaatttttgt 36307142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 236 - 295
Target Start/End: Complemental strand, 45000477 - 45000418
Alignment:
Q  236 ttcaactcacttttatataaaatcaattttacaaaaccaattcattcaaaaccaattttt 295  Q
    |||||||||||||||  |||||||||||||||| || ||||| |||||||| ||| ||||    
T  45000477 ttcaactcacttttaggtaaaatcaattttacataatcaatttattcaaaatcaaatttt 45000418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 236 - 314
Target Start/End: Complemental strand, 38129482 - 38129404
Alignment:
Q  236 ttcaactcacttttatataaaatcaattttacaaaaccaattcattcaaaaccaatttttgtcaccgtagaaccaaaca 314  Q
    |||| ||||||||||  || |||| |||||||| || |||||||||||||| ||||||||||| |   |||||||||||    
T  38129482 ttcatctcacttttagttagaatccattttacagaatcaattcattcaaaatcaatttttgtcgcaacagaaccaaaca 38129404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 270
Target Start/End: Complemental strand, 3654824 - 3654787
Alignment:
Q  233 acattcaactcacttttatataaaatcaattttacaaa 270  Q
    ||||||||||||||||||  ||||||||||||||||||    
T  3654824 acattcaactcacttttaactaaaatcaattttacaaa 3654787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 324 - 385
Target Start/End: Complemental strand, 37420378 - 37420317
Alignment:
Q  324 ttccacttttggaggagacaaaagtgattccagatgtgaagaattgattttgacatgtttgg 385  Q
    ||||||||||||| |||   ||| |||||| ||| ||| |||||||||||||||||||||||    
T  37420378 ttccacttttggaagagtgcaaattgattctagaggtgtagaattgattttgacatgtttgg 37420317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 230 - 314
Target Start/End: Original strand, 1763283 - 1763367
Alignment:
Q  230 tttacattcaactcacttttatataaaatcaattttacaaaaccaattcattcaaaaccaatttttgtcaccgtagaaccaaaca 314  Q
    |||| |||||||||| |||||   |||||||||||||||||| |||||   |||||| ||||| | ||||||| | |||||||||    
T  1763283 tttaaattcaactcaattttaaccaaaatcaattttacaaaatcaattttatcaaaatcaattctcgtcaccgcacaaccaaaca 1763367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 324 - 384
Target Start/End: Complemental strand, 37649655 - 37649595
Alignment:
Q  324 ttccacttttggaggagacaaaagtgattccagatgtgaagaattgattttgacatgtttg 384  Q
    ||||||||||||||||| ||||| ||||||  || ||   |||||||||||||||||||||    
T  37649655 ttccacttttggaggagtcaaaattgattcttgaggtatggaattgattttgacatgtttg 37649595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 238 - 314
Target Start/End: Complemental strand, 10055031 - 10054955
Alignment:
Q  238 caactcacttttatataaaatcaattttacaaaaccaattcattcaaaaccaatttttgtcaccgtagaaccaaaca 314  Q
    ||||||| |||||  ||| |||||||||||||||||||||||||||||| ||| ||||||||||| | |||||||||    
T  10055031 caactcaattttaactaatatcaattttacaaaaccaattcattcaaaatcaacttttgtcaccgcaaaaccaaaca 10054955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 230 - 317
Target Start/End: Original strand, 1500010 - 1500097
Alignment:
Q  230 tttacattcaactcacttttatataaaatcaattttacaaaaccaattcattcaaaaccaatttttgtcaccgtagaaccaaacatac 317  Q
    |||||| ||||||| ||||||   |||||||||||||||||| ||||||| |||||| |||||||||||| |  ||||||||| ||||    
T  1500010 tttacactcaactcgcttttagccaaaatcaattttacaaaatcaattcagtcaaaatcaatttttgtcaactcagaaccaaaaatac 1500097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 230 - 314
Target Start/End: Complemental strand, 19260858 - 19260774
Alignment:
Q  230 tttacattcaactcacttttatataaaatcaattttacaaaaccaattcattcaaaaccaatttttgtcaccgtagaaccaaaca 314  Q
    |||| |||||||||| |||||   | ||||||||||||| |||||| |||||||||| || |||||||||||| | |||||||||    
T  19260858 tttatattcaactcaattttagccagaatcaattttacagaaccaaatcattcaaaatcattttttgtcaccgcacaaccaaaca 19260774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 234 - 319
Target Start/End: Complemental strand, 10564893 - 10564807
Alignment:
Q  234 cattcaactcacttttatataaaatcaattttacaaaaccaattcattcaaaaccaa-tttttgtcaccgtagaaccaaacatacgt 319  Q
    |||||||||||||| ||  |||||  |||||||||||| || || |||||||| ||| |||||||||||| ||||||||||| ||||    
T  10564893 cattcaactcacttctaactaaaagaaattttacaaaatcagttaattcaaaatcaattttttgtcaccgcagaaccaaacacacgt 10564807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 324 - 385
Target Start/End: Original strand, 34620790 - 34620851
Alignment:
Q  324 ttccacttttggaggagacaaaagtgattccagatgtgaagaattgattttgacatgtttgg 385  Q
    ||||||||||||||||  ||||| |||||| | | ||| |||||||||||||||||||||||    
T  34620790 ttccacttttggaggacccaaaattgattctaaaggtgtagaattgattttgacatgtttgg 34620851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 324 - 385
Target Start/End: Original strand, 34748227 - 34748288
Alignment:
Q  324 ttccacttttggaggagacaaaagtgattccagatgtgaagaattgattttgacatgtttgg 385  Q
    ||||||||||||||||  ||||| |||||| | | ||| |||||||||||||||||||||||    
T  34748227 ttccacttttggaggacccaaaattgattctaaaggtgtagaattgattttgacatgtttgg 34748288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 235 - 286
Target Start/End: Complemental strand, 9043774 - 9043723
Alignment:
Q  235 attcaactcacttttatataaaatcaattttacaaaaccaattcattcaaaa 286  Q
    ||||||||||||||||  ||||||||||| ||||||| ||||||||| ||||    
T  9043774 attcaactcacttttaactaaaatcaattatacaaaatcaattcattaaaaa 9043723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 255 - 313
Target Start/End: Original strand, 3002827 - 3002885
Alignment:
Q  255 aaatcaattttacaaaaccaattcattcaaaaccaatttttgtcaccgtagaaccaaac 313  Q
    ||||||||| || |||| |||||||||||||| ||||| || ||||||| |||||||||    
T  3002827 aaatcaattctagaaaatcaattcattcaaaaacaattgttatcaccgtggaaccaaac 3002885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 318 - 392
Target Start/End: Original strand, 7262969 - 7263043
Alignment:
Q  318 gtttgtttccacttttggaggagacaaaagtgattccagatgtgaagaattgattttgacatgtttggattttct 392  Q
    ||||| |||||||||| || ||| ||||| |||||| ||| ||| ||||||||||||||||| || |||| ||||    
T  7262969 gtttggttccacttttagatgaggcaaaattgattctagaagtgtagaattgattttgacattttaggatgttct 7263043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 295
Target Start/End: Original strand, 3525039 - 3525100
Alignment:
Q  234 cattcaactcacttttatataaaatcaattttacaaaaccaattcattcaaaaccaattttt 295  Q
    |||||||||||||||||   | ||||||||||||| || ||||||||||||||  |||||||    
T  3525039 cattcaactcacttttagccacaatcaattttacataatcaattcattcaaaattaattttt 3525100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 252 - 317
Target Start/End: Original strand, 14391015 - 14391080
Alignment:
Q  252 ataaaatcaattttacaaaaccaattcattcaaaaccaatttttgtcaccgtagaaccaaacatac 317  Q
    ||||||||||||| |||| | |||| |||| |||| ||||| |||| |||| ||||||||||||||    
T  14391015 ataaaatcaatttcacaacatcaatgcatttaaaatcaattgttgtaaccgcagaaccaaacatac 14391080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 314
Target Start/End: Original strand, 20871626 - 20871695
Alignment:
Q  245 cttttatataaaatcaattttacaaaaccaattcattcaaaaccaatttttgtcaccgtagaaccaaaca 314  Q
    ||||||| |||||||||||||||| || ||||||| | |||| ||||| || ||||  ||||||||||||    
T  20871626 cttttatctaaaatcaattttacacaatcaattcaataaaaatcaattattatcactatagaaccaaaca 20871695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 265
Target Start/End: Original strand, 25208734 - 25208771
Alignment:
Q  228 attttacattcaactcacttttatataaaatcaatttt 265  Q
    |||||||||||||||||||||||  |||||||||||||    
T  25208734 attttacattcaactcacttttaattaaaatcaatttt 25208771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 318 - 387
Target Start/End: Complemental strand, 29240639 - 29240570
Alignment:
Q  318 gtttgtttccacttttggaggagacaaaagtgattccagatgtgaagaattgattttgacatgtttggat 387  Q
    ||||| |||||||||||| |||  ||||| |||||| ||| ||| | |||||||||||||||||| ||||    
T  29240639 gtttggttccacttttgggggaatcaaaattgattctagaggtgtaaaattgattttgacatgttaggat 29240570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 279 - 315
Target Start/End: Complemental strand, 10755435 - 10755399
Alignment:
Q  279 attcaaaaccaatttttgtcaccgtagaaccaaacat 315  Q
    |||||||| ||||||||||||||| ||||||||||||    
T  10755435 attcaaaatcaatttttgtcaccgcagaaccaaacat 10755399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 348 - 392
Target Start/End: Complemental strand, 19261040 - 19260996
Alignment:
Q  348 tgattccagatgtgaagaattgattttgacatgtttggattttct 392  Q
    |||||||||| |||  |||||||||||||||||||||||| ||||    
T  19261040 tgattccagaagtgttgaattgattttgacatgtttggatgttct 19260996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 318 - 374
Target Start/End: Original strand, 19601715 - 19601771
Alignment:
Q  318 gtttgtttccacttttggaggagacaaaagtgattccagatgtgaagaattgatttt 374  Q
    ||||| ||||||||||||||||| ||||| ||||||||||  || ||||||| ||||    
T  19601715 gtttggttccacttttggaggagtcaaaattgattccagagatgtagaattgttttt 19601771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 228 - 314
Target Start/End: Original strand, 24916592 - 24916678
Alignment:
Q  228 attttacattcaactcacttttatataaaatcaattttacaaaaccaattcattcaaaaccaatttttgtcaccgtagaaccaaaca 314  Q
    |||||||||||||||||||||||     |||||||||||||||| ||| || |||||||  |||||||||||||| |||||||||||    
T  24916592 attttacattcaactcacttttagcctgaatcaattttacaaaatcaactcgttcaaaattaatttttgtcaccgcagaaccaaaca 24916678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 319 - 385
Target Start/End: Original strand, 3776438 - 3776504
Alignment:
Q  319 tttgtttccacttttggaggagacaaaagtgattccagatgtgaagaattgattttgacatgtttgg 385  Q
    |||| ||||||||||||||||||||||| || ||  ||| ||| |||||||||||||||||||||||    
T  3776438 tttggttccacttttggaggagacaaaattggttatagaggtgtagaattgattttgacatgtttgg 3776504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 230 - 292
Target Start/End: Original strand, 30958147 - 30958209
Alignment:
Q  230 tttacattcaactcacttttatataaaatcaattttacaaaaccaattcattcaaaaccaatt 292  Q
    |||||||||||||||| ||||   |||||||||||||||||| |||||||||||||| |||||    
T  30958147 tttacattcaactcacatttagccaaaatcaattttacaaaatcaattcattcaaaatcaatt 30958209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 230 - 292
Target Start/End: Original strand, 30973959 - 30974021
Alignment:
Q  230 tttacattcaactcacttttatataaaatcaattttacaaaaccaattcattcaaaaccaatt 292  Q
    |||||||||||||||| ||||   |||||||||||||||||| |||||||||||||| |||||    
T  30973959 tttacattcaactcacatttagccaaaatcaattttacaaaatcaattcattcaaaatcaatt 30974021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 227 - 312
Target Start/End: Complemental strand, 39658048 - 39657963
Alignment:
Q  227 tattttacattcaactcacttttatataaaatcaattttacaaaaccaattcattcaaaaccaatttttgtcaccgtagaaccaaa 312  Q
    |||||||||||||||  |||||||  |||||||||||||||| || ||||| |||||||| |||||||| | | |||| |||||||    
T  39658048 tattttacattcaacgaacttttaagtaaaatcaattttacataatcaatttattcaaaatcaatttttattatcgtataaccaaa 39657963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 324 - 385
Target Start/End: Complemental strand, 52925792 - 52925731
Alignment:
Q  324 ttccacttttggaggagacaaaagtgattccagatgtgaagaattgattttgacatgtttgg 385  Q
    ||||||||||||||||| ||||| |||||| ||| ||| | |||||||||||||||||||||    
T  52925792 ttccacttttggaggagtcaaaattgattctagaggtgtataattgattttgacatgtttgg 52925731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 236 - 292
Target Start/End: Complemental strand, 31766216 - 31766160
Alignment:
Q  236 ttcaactcacttttatataaaatcaattttacaaaaccaattcattcaaaaccaatt 292  Q
    ||||||||||||||||  ||||| |||||||||||| |||||||||||||| |||||    
T  31766216 ttcaactcacttttatccaaaattaattttacaaaatcaattcattcaaaatcaatt 31766160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 231 - 314
Target Start/End: Complemental strand, 25129513 - 25129430
Alignment:
Q  231 ttacattcaactcacttttatataaaatcaattttacaaaaccaattcattcaaaaccaatttttgtcaccgtagaaccaaaca 314  Q
    |||||||||||||||||||||    |||||||||||||| | |||||||||||| | |||||| ||||||   |||||||||||    
T  25129513 ttacattcaactcacttttatcctgaatcaattttacaacatcaattcattcaagatcaatttatgtcactagagaaccaaaca 25129430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 242 - 293
Target Start/End: Original strand, 49158642 - 49158693
Alignment:
Q  242 tcacttttatataaaatcaattttacaaaaccaattcattcaaaaccaattt 293  Q
    |||||||||| | ||||||||||||||||| |||||||||||||| ||||||    
T  49158642 tcacttttatcttaaatcaattttacaaaatcaattcattcaaaatcaattt 49158693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 318 - 384
Target Start/End: Complemental strand, 3845299 - 3845233
Alignment:
Q  318 gtttgtttccacttttggaggagacaaaagtgattccagatgtgaagaattgattttgacatgtttg 384  Q
    ||||| |||||||||||||| |  ||||| |||||| ||| ||| ||||||||||||||||||||||    
T  3845299 gtttggttccacttttggagtaaccaaaattgattctagaggtgtagaattgattttgacatgtttg 3845233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 230 - 314
Target Start/End: Original strand, 42644316 - 42644401
Alignment:
Q  230 tttacattcaactcacttttatataaaatcaa-ttttacaaaaccaattcattcaaaaccaatttttgtcaccgtagaaccaaaca 314  Q
    |||||||||||||||||||||  ||||||||| ||||| |||| ||||||| |||||| ||||| |  |||||| | |||||||||    
T  42644316 tttacattcaactcacttttaactaaaatcaatttttataaaatcaattcactcaaaatcaattctcatcaccgcataaccaaaca 42644401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 227 - 314
Target Start/End: Complemental strand, 27825357 - 27825270
Alignment:
Q  227 tattttacattcaactcacttttatataaaatcaattttacaaaaccaattcattcaaaaccaatttttgtcaccgtagaaccaaaca 314  Q
    ||||||| |||||||| |||||||   | ||||||||||| ||||  ||||||||||||| |||||| ||| |||| | |||||||||    
T  27825357 tattttatattcaactaacttttagtcataatcaattttataaaataaattcattcaaaatcaatttgtgttaccgcataaccaaaca 27825270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 235 - 294
Target Start/End: Complemental strand, 49634056 - 49633997
Alignment:
Q  235 attcaactcacttttatataaaatcaattttacaaaaccaattcattcaaaaccaatttt 294  Q
    ||||||||||||||||  | |||| |||||||||||| ||||||| |||||| |||||||    
T  49634056 attcaactcacttttaacttaaattaattttacaaaatcaattcaatcaaaatcaatttt 49633997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 228 - 314
Target Start/End: Original strand, 25181262 - 25181348
Alignment:
Q  228 attttacattcaactcacttttatataaaatcaattttacaaaaccaattcattcaaaaccaatttttgtcaccgtagaaccaaaca 314  Q
    |||||||||| ||||||||||||   |||||||||| ||||||| ||||||| |||| | ||||| | | ||||| | |||||||||    
T  25181262 attttacattaaactcacttttaatcaaaatcaattctacaaaatcaattcaatcaatatcaattctagccaccgcataaccaaaca 25181348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 254 - 300
Target Start/End: Original strand, 44771862 - 44771908
Alignment:
Q  254 aaaatcaattttacaaaaccaattcattcaaaaccaatttttgtcac 300  Q
    ||||||||||||||| || |||||||||||||| ||||| |||||||    
T  44771862 aaaatcaattttacataatcaattcattcaaaatcaattcttgtcac 44771908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 236 - 289
Target Start/End: Complemental strand, 584762 - 584709
Alignment:
Q  236 ttcaactcacttttatataaaatcaattttacaaaaccaattcattcaaaacca 289  Q
    ||||||| | |||||  ||||||||||||||||||| ||||||| |||||||||    
T  584762 ttcaacttaattttagctaaaatcaattttacaaaatcaattcactcaaaacca 584709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 223 - 292
Target Start/End: Complemental strand, 41115344 - 41115275
Alignment:
Q  223 aaactattttacattcaactcacttttatataaaatcaattttacaaaaccaattcattcaaaaccaatt 292  Q
    |||| ||||||||||||||||| | |||   |||||||||| ||||||| ||||||||||| || |||||    
T  41115344 aaaccattttacattcaactcattgttagccaaaatcaattatacaaaatcaattcattcataatcaatt 41115275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 285
Target Start/End: Complemental strand, 48089667 - 48089610
Alignment:
Q  228 attttacattcaactcacttttatataaaatcaattttacaaaaccaattcattcaaa 285  Q
    |||||||||||||||||||||||  || ||||||||||| | || ||||| |||||||    
T  48089667 attttacattcaactcacttttaactagaatcaattttaaagaatcaatttattcaaa 48089610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 228 - 300
Target Start/End: Original strand, 38626764 - 38626836
Alignment:
Q  228 attttacattcaactcacttttatataaaatcaattttacaaaaccaattcattcaaaaccaatttttgtcac 300  Q
    |||| ||||||||||||||||||  |||| || | |||||| || ||||||||| |||| |||||| ||||||    
T  38626764 atttcacattcaactcacttttaactaaagtcgactttacataatcaattcattaaaaatcaatttatgtcac 38626836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 234 - 294
Target Start/End: Original strand, 53567990 - 53568050
Alignment:
Q  234 cattcaactcacttttatataaaatcaattttacaaaaccaattcattcaaaaccaatttt 294  Q
    |||||||||||||||||   ||||||||||||  |||| ||||||| |||||| |||||||    
T  53567990 cattcaactcacttttaatcaaaatcaattttgtaaaatcaattcactcaaaatcaatttt 53568050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 318 - 381
Target Start/End: Original strand, 15368141 - 15368204
Alignment:
Q  318 gtttgtttccacttttggaggagacaaaagtgattccagatgtgaagaattgattttgacatgt 381  Q
    ||||| ||||||||||||||||| ||||| |||||| |||| || |||||||||||||||||||    
T  15368141 gtttggttccacttttggaggagccaaaattgattctagatatgtagaattgattttgacatgt 15368204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 230 - 314
Target Start/End: Complemental strand, 2868397 - 2868313
Alignment:
Q  230 tttacattcaactcacttttatataaaatcaattttacaaaaccaattcattcaaaaccaatttttgtcaccgtagaaccaaaca 314  Q
    |||||||||||||||||||||  ||||||||||| |||||||  |||||    |||| ||||||||||||| || ||||||||||    
T  2868397 tttacattcaactcacttttaactaaaatcaattctacaaaattaattctactaaaatcaatttttgtcactgtggaaccaaaca 2868313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 231 - 314
Target Start/End: Complemental strand, 40910964 - 40910881
Alignment:
Q  231 ttacattcaactcacttttatataaaatcaattttacaaaaccaattcattcaaaaccaatttttgtcaccgtagaaccaaaca 314  Q
    |||||||||||||||||||||  ||||| |||||||||||| || |||||| |||| |||||| ||| | |  |||||||||||    
T  40910964 ttacattcaactcacttttattcaaaataaattttacaaaatcacttcatttaaaatcaatttatgttagcaaagaaccaaaca 40910881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 228 - 277
Target Start/End: Complemental strand, 5465447 - 5465398
Alignment:
Q  228 attttacattcaactcacttttatataaaatcaattttacaaaaccaatt 277  Q
    ||||| ||||||| |||||||||| ||||||||||||||||||| |||||    
T  5465447 atttttcattcaattcacttttatctaaaatcaattttacaaaatcaatt 5465398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 262 - 315
Target Start/End: Original strand, 10373024 - 10373077
Alignment:
Q  262 ttttacaaaaccaattcattcaaaaccaatttttgtcaccgtagaaccaaacat 315  Q
    ||||||||||  |||||||| |||| ||||||||||||| ||||||||||||||    
T  10373024 ttttacaaaattaattcatttaaaatcaatttttgtcacagtagaaccaaacat 10373077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 330 - 387
Target Start/End: Original strand, 28973768 - 28973825
Alignment:
Q  330 ttttggaggagacaaaagtgattccagatgtgaagaattgattttgacatgtttggat 387  Q
    ||||||||||| | ||| |||||| ||||||| |||||||||||||| ||||||||||    
T  28973768 ttttggaggagcctaaattgattctagatgtgtagaattgattttgatatgtttggat 28973825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 324 - 385
Target Start/End: Original strand, 29922798 - 29922859
Alignment:
Q  324 ttccacttttggaggagacaaaagtgattccagatgtgaagaattgattttgacatgtttgg 385  Q
    |||||||||| |||||| ||||| |||||| ||  ||| |||||||||||||||||||||||    
T  29922798 ttccactttttgaggagtcaaaattgattctagtagtgtagaattgattttgacatgtttgg 29922859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 230 - 286
Target Start/End: Original strand, 14299436 - 14299492
Alignment:
Q  230 tttacattcaactcacttttatataaaatcaattttacaaaaccaattcattcaaaa 286  Q
    ||||| |||||||||||||||| || ||||||||||||| || ||||||| ||||||    
T  14299436 tttaccttcaactcacttttatctagaatcaattttacacaatcaattcactcaaaa 14299492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 324 - 383
Target Start/End: Complemental strand, 3043185 - 3043126
Alignment:
Q  324 ttccacttttggaggagacaaaagtgattccagatgtgaagaattgattttgacatgttt 383  Q
    |||||||| |||||||  ||||| |||||| ||| ||| |||||||||||||||||||||    
T  3043185 ttccacttatggaggaatcaaaattgattctagaggtgtagaattgattttgacatgttt 3043126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 235 - 314
Target Start/End: Complemental strand, 7328603 - 7328524
Alignment:
Q  235 attcaactcacttttatataaaatcaattttacaaaaccaattcattcaaaaccaatttttgtcaccgtagaaccaaaca 314  Q
    |||||||||| ||||||  | |||||| |||||| || ||||||||| |||| || |||||||||| | |||||||||||    
T  7328603 attcaactcaattttatgcataatcaactttacagaatcaattcatttaaaatcagtttttgtcactgcagaaccaaaca 7328524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 223 - 286
Target Start/End: Complemental strand, 14067095 - 14067032
Alignment:
Q  223 aaactattttacattcaactcacttttatataaaatcaattttacaaaaccaattcattcaaaa 286  Q
    ||||||||||||||| ||||||||||||   ||||||||||||||  ||||| |||||| ||||    
T  14067095 aaactattttacatttaactcacttttaatcaaaatcaattttacctaaccatttcattaaaaa 14067032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 318 - 385
Target Start/End: Complemental strand, 34250538 - 34250471
Alignment:
Q  318 gtttgtttccacttttggaggagacaaaagtgattccagatgtgaagaattgattttgacatgtttgg 385  Q
    ||||| ||||||||||| |||||  | || |||||| ||||||| ||||||| |||||||||||||||    
T  34250538 gtttggttccacttttgaaggagttataattgattctagatgtgtagaattgtttttgacatgtttgg 34250471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 233 - 299
Target Start/End: Original strand, 14671137 - 14671203
Alignment:
Q  233 acattcaactcacttttatataaaatcaattttacaaaaccaattcattcaaaaccaatttttgtca 299  Q
    |||||||| |||||||||   | ||||||||| |||||| |||||||||||||| || |||||||||    
T  14671137 acattcaattcacttttagccataatcaatttcacaaaatcaattcattcaaaatcattttttgtca 14671203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 277
Target Start/End: Original strand, 6988228 - 6988277
Alignment:
Q  228 attttacattcaactcacttttatataaaatcaattttacaaaaccaatt 277  Q
    |||||| |||||||| |||||||  ||||||||||||||||||| |||||    
T  6988228 attttaaattcaacttacttttaattaaaatcaattttacaaaatcaatt 6988277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 286
Target Start/End: Original strand, 29923013 - 29923066
Alignment:
Q  233 acattcaactcacttttatataaaatcaattttacaaaaccaattcattcaaaa 286  Q
    ||||||||||||||| ||   ||||||||||||||| || ||||||||||||||    
T  29923013 acattcaactcacttatagtcaaaatcaattttacataatcaattcattcaaaa 29923066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 236 - 317
Target Start/End: Original strand, 35108355 - 35108436
Alignment:
Q  236 ttcaactcacttttatataaaatcaattttacaaaaccaattcattcaaaaccaatttttgtcaccgtagaaccaaacatac 317  Q
    ||||||| | |||||| |||||||||||||||| ||  |||||| ||||||  ||||||| ||| || | ||||||||||||    
T  35108355 ttcaactaatttttatttaaaatcaattttacagaattaattcactcaaaataaatttttttcatcgcaaaaccaaacatac 35108436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 279
Target Start/End: Complemental strand, 43438639 - 43438590
Alignment:
Q  230 tttacattcaactcacttttatataaaatcaattttacaaaaccaattca 279  Q
    |||||||| ||||||||||||| ||||| |||||||||| || |||||||    
T  43438639 tttacatttaactcacttttatctaaaaacaattttacataatcaattca 43438590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 236 - 272
Target Start/End: Original strand, 1145039 - 1145075
Alignment:
Q  236 ttcaactcacttttatataaaatcaattttacaaaac 272  Q
    ||||||||||||||| |||||||||||| ||||||||    
T  1145039 ttcaactcacttttaaataaaatcaattctacaaaac 1145075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 254 - 314
Target Start/End: Original strand, 6414251 - 6414311
Alignment:
Q  254 aaaatcaattttacaaaaccaattcattcaaaaccaatttttgtcaccgtagaaccaaaca 314  Q
    ||||| |||||||||||| ||||||||||||||  | ||||| ||| |||| |||||||||    
T  6414251 aaaattaattttacaaaatcaattcattcaaaaatattttttatcaacgtaaaaccaaaca 6414311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 273 - 317
Target Start/End: Original strand, 8591704 - 8591748
Alignment:
Q  273 caattcattcaaaaccaatttttgtcaccgtagaaccaaacatac 317  Q
    ||||||| |||||| |||| |||||||||| ||||||||||||||    
T  8591704 caattcactcaaaatcaatatttgtcaccgcagaaccaaacatac 8591748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0172 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0172
Description:

Target: scaffold0172; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 230 - 314
Target Start/End: Complemental strand, 15304 - 15220
Alignment:
Q  230 tttacattcaactcacttttatataaaatcaattttacaaaaccaattcattcaaaaccaatttttgtcaccgtagaaccaaaca 314  Q
    |||| ||||||||||||||||   ||||||||||| |||||| ||||||  |||||| ||||||| ||||||| | |||||||||    
T  15304 tttatattcaactcacttttaaccaaaatcaatttgacaaaatcaattctatcaaaatcaattttcgtcaccgcacaaccaaaca 15220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000009; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 245 - 317
Target Start/End: Complemental strand, 2031956 - 2031884
Alignment:
Q  245 cttttatataaaatcaattttacaaaaccaattcattcaaaaccaatttttgtcaccgtagaaccaaacatac 317  Q
    |||||| ||||||| ||||||||||||  ||||| ||||||| |||||||| ||||| || ||||||||||||    
T  2031956 cttttaaataaaataaattttacaaaataaattctttcaaaatcaatttttctcaccataaaaccaaacatac 2031884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 230 - 317
Target Start/End: Original strand, 10368075 - 10368162
Alignment:
Q  230 tttacattcaactcacttttatataaaatcaattttacaaaaccaattcattcaaaaccaatttttgtcaccgtagaaccaaacatac 317  Q
    ||||| |||||||||||||||   |||||||||||||||||| ||||||| |||||| ||||| || |||| |   ||||||||||||    
T  10368075 tttaccttcaactcacttttactcaaaatcaattttacaaaaacaattcactcaaaatcaattcttatcactgcgaaaccaaacatac 10368162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 230 - 300
Target Start/End: Complemental strand, 37159451 - 37159381
Alignment:
Q  230 tttacattcaactcacttttatataaaatcaattttacaaaaccaattcattcaaaaccaatttttgtcac 300  Q
    |||||||||||||| ||||||  |||||| ||||||||| || |||||| |||||||  ||||||||||||    
T  37159451 tttacattcaactcccttttagttaaaattaattttacacaatcaattcgttcaaaattaatttttgtcac 37159381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 269 - 314
Target Start/End: Complemental strand, 34957063 - 34957018
Alignment:
Q  269 aaaccaattcattcaaaaccaatttttgtcaccgtagaaccaaaca 314  Q
    |||||||||||||||||| |||||||||||| || |||||||||||    
T  34957063 aaaccaattcattcaaaatcaatttttgtcagcgcagaaccaaaca 34957018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 237 - 314
Target Start/End: Complemental strand, 41891859 - 41891782
Alignment:
Q  237 tcaactcacttttatataaaatcaattttacaaaaccaattcattcaaaaccaatttttgtcaccgtagaaccaaaca 314  Q
    ||||||||||| ||  ||||||||||| ||||||| ||||||| ||||||  |||||| ||||||| | |||||||||    
T  41891859 tcaactcacttctaactaaaatcaattctacaaaatcaattcaatcaaaattaattttagtcaccgcataaccaaaca 41891782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 230 - 314
Target Start/End: Original strand, 36779453 - 36779537
Alignment:
Q  230 tttacattcaactcacttttatataaaatcaattttacaaaaccaattcattcaaaaccaatttttgtcaccgtagaaccaaaca 314  Q
    |||||||||||||||||||||   |||||||||| ||||||| |||||   |||||| ||||| | ||||||| | |||||||||    
T  36779453 tttacattcaactcacttttaatcaaaatcaattctacaaaatcaattatatcaaaatcaattctcgtcaccgcacaaccaaaca 36779537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 230 - 286
Target Start/End: Original strand, 38516360 - 38516416
Alignment:
Q  230 tttacattcaactcacttttatataaaatcaattttacaaaaccaattcattcaaaa 286  Q
    ||||||||||||||||| ||||  |||||||||| ||||||| ||||||| ||||||    
T  38516360 tttacattcaactcactattatcgaaaatcaattctacaaaatcaattcactcaaaa 38516416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 236 - 278
Target Start/End: Original strand, 1373107 - 1373149
Alignment:
Q  236 ttcaactcacttttatataaaatcaattttacaaaaccaattc 278  Q
    ||||||||||||||||  |||||||||||||||||| ||||||    
T  1373107 ttcaactcacttttatccaaaatcaattttacaaaatcaattc 1373149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 236 - 314
Target Start/End: Original strand, 41408258 - 41408336
Alignment:
Q  236 ttcaactcacttttatataaaatcaattttacaaaaccaattcattcaaaaccaatttttgtcaccgtagaaccaaaca 314  Q
    ||||| |||||| ||  ||||||||||| |||||||  |||||| |||||| |||||||  |||||||| |||||||||    
T  41408258 ttcaattcacttctaactaaaatcaattctacaaaattaattcaatcaaaatcaattttaatcaccgtataaccaaaca 41408336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 319 - 392
Target Start/End: Original strand, 11038081 - 11038154
Alignment:
Q  319 tttgtttccacttttggaggagacaaaagtgattccagatgtgaagaattgattttgacatgtttggattttct 392  Q
    |||||||  |||||| || ||||||||| |||||| ||| ||  | ||||||||||||||||||||||| ||||    
T  11038081 tttgttttaactttttgacgagacaaaattgattctagaggtatataattgattttgacatgtttggatgttct 11038154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 301
Target Start/End: Complemental strand, 18355798 - 18355753
Alignment:
Q  256 aatcaattttacaaaaccaattcattcaaaaccaatttttgtcacc 301  Q
    |||||||||||||||| ||||||| |||||| |||||||| |||||    
T  18355798 aatcaattttacaaaatcaattcactcaaaatcaatttttatcacc 18355753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 317
Target Start/End: Complemental strand, 32994217 - 32994128
Alignment:
Q  228 attttacattcaactcacttttatataaaatcaattttacaaaaccaattcattcaaaaccaatttttgtcaccgtagaaccaaacatac 317  Q
    ||||||| ||||||||||||| |   | ||||||||||||| || || ||||||||||| ||||| |  |||| | ||||||||||||||    
T  32994217 attttaccttcaactcactttcagccagaatcaattttacataatcagttcattcaaaatcaattgtcatcactgcagaaccaaacatac 32994128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 318 - 383
Target Start/End: Original strand, 35495158 - 35495223
Alignment:
Q  318 gtttgtttccacttttggaggagacaaaagtgattccagatgtgaagaattgattttgacatgttt 383  Q
    ||||| |||||||||||||| |  ||||| |||||| | | ||| |||||||||||||||||||||    
T  35495158 gtttggttccacttttggagcacccaaaattgattctacaagtgtagaattgattttgacatgttt 35495223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 294
Target Start/End: Original strand, 35550283 - 35550347
Alignment:
Q  230 tttacattcaactcactttt-atataaaatcaattttacaaaaccaattcattcaaaaccaatttt 294  Q
    |||||| | ||||||||||| ||| |||||||||||||||||| ||||||| |||||| |||||||    
T  35550283 tttacactaaactcacttttgata-aaaatcaattttacaaaatcaattcaatcaaaatcaatttt 35550347  T

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Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 228 - 264
Target Start/End: Complemental strand, 2778390 - 2778354
Alignment:
Q  228 attttacattcaactcacttttatataaaatcaattt 264  Q
    |||||||||||||||||||||||  ||||||||||||    
T  2778390 attttacattcaactcacttttaagtaaaatcaattt 2778354  T

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Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 236 - 300
Target Start/End: Complemental strand, 5400182 - 5400118
Alignment:
Q  236 ttcaactcacttttatataaaatcaattttacaaaaccaattcattcaaaaccaatttttgtcac 300  Q
    |||||||||||||||   |||||||||||||||||| ||||  ||| ||||  ||||||||||||    
T  5400182 ttcaactcacttttagcaaaaatcaattttacaaaatcaatcaatttaaaatgaatttttgtcac 5400118  T

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Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 230 - 294
Target Start/End: Complemental strand, 10552956 - 10552892
Alignment:
Q  230 tttacattcaactcacttttatataaaatcaattttacaaaaccaattcattcaaaaccaatttt 294  Q
    |||||||||||||||||||||   ||||||||||||| |  | ||||| ||||||| ||||||||    
T  10552956 tttacattcaactcacttttaaccaaaatcaattttagagtatcaatttattcaaatccaatttt 10552892  T

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Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 236 - 316
Target Start/End: Complemental strand, 38335830 - 38335751
Alignment:
Q  236 ttcaactcacttttatataaaatcaattttacaaaaccaattcattcaaaaccaatttttgtcaccgtagaaccaaacata 316  Q
    ||||||||||||||| || |||| |||||||||    ||||| | |||||| ||||| ||||||||| |||||||||||||    
T  38335830 ttcaactcactttta-atcaaattaattttacattgtcaattaactcaaaatcaattcttgtcaccgaagaaccaaacata 38335751  T

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Target: scaffold1191 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold1191
Description:

Target: scaffold1191; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 253 - 314
Target Start/End: Original strand, 55 - 116
Alignment:
Q  253 taaaatcaattttacaaaaccaattcattcaaaaccaatttttgtcaccgtagaaccaaaca 314  Q
    ||||||||| ||||||| |||||| ||||||||| |||||||||||| || | |||||||||    
T  55 taaaatcaactttacaagaccaatccattcaaaatcaatttttgtcaacgcataaccaaaca 116  T

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Target: scaffold0571 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0571
Description:

Target: scaffold0571; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 253 - 314
Target Start/End: Original strand, 7825 - 7886
Alignment:
Q  253 taaaatcaattttacaaaaccaattcattcaaaaccaatttttgtcaccgtagaaccaaaca 314  Q
    ||||||||| ||||||| |||||| ||||||||| |||||||||||| || | |||||||||    
T  7825 taaaatcaactttacaagaccaatccattcaaaatcaatttttgtcatcgcataaccaaaca 7886  T

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Target: scaffold0248 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0248
Description:

Target: scaffold0248; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 228 - 277
Target Start/End: Complemental strand, 13324 - 13275
Alignment:
Q  228 attttacattcaactcacttttatataaaatcaattttacaaaaccaatt 277  Q
    ||||||||||||||||| ||||| ||| |||||||||||||||| |||||    
T  13324 attttacattcaactcaattttaaatataatcaattttacaaaatcaatt 13275  T

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Target: scaffold0361 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 318 - 376
Target Start/End: Complemental strand, 14300 - 14242
Alignment:
Q  318 gtttgtttccacttttggaggagacaaaagtgattccagatgtgaagaattgattttga 376  Q
    ||||| ||||||||||||| ||| ||||| ||| || ||||||| ||||||||||||||    
T  14300 gtttggttccacttttggaagagccaaaattgaatctagatgtgtagaattgattttga 14242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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