View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1137_low_83 (Length: 400)
Name: NF1137_low_83
Description: NF1137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1137_low_83 |
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| [»] chr3 (3 HSPs) |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 385; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 16 - 400
Target Start/End: Original strand, 50807953 - 50808337
Alignment:
| Q |
16 |
atatgattgtgagtggtttcaaaaattccaaatcatggtttcaaaaattccaaatcacgtaacatgccattgcacatgtttatcaaaggtctagaaaagt |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50807953 |
atatgattgtgagtggtttcaaaaattccaaatcatggtttcaaaaattccaaatcacgtaacatgccattgcacatgtttatcaaaggtctagaaaagt |
50808052 |
T |
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| Q |
116 |
tacaaaccaattgtttagcatactttaatttcaggaatcaaacttgaagtctgaaagtaaagcaatgcaaagcctaaaattcaaaacttaatgttgttgc |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50808053 |
tacaaaccaattgtttagcatactttaatttcaggaatcaaacttgaagtctgaaagtaaagcaatgcaaagcctaaaattcaaaacttaatgttgttgc |
50808152 |
T |
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| Q |
216 |
acatgggaatcccaatttggaatcacaaccaaatgaatgtcaacccaatttttaacacaatgaaacaatcatcaatggaggtaaccaagcaaaggctaac |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50808153 |
acatgggaatcccaatttggaatcacaaccaaatgaatgtcaacccaatttttaacacaatgaaacaatcatcaatggaggtaaccaagcaaaggctaac |
50808252 |
T |
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| Q |
316 |
aaacaatgtaacaaagcacaaaccttttttcaaattattctactttaatttcaaacagggcaacaaagctacaaaattgaacaaa |
400 |
Q |
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| T |
50808253 |
aaacaatgtaacaaagcacaaaccttttttcaaattattctactttaatttcaaacagggcaacaaagctacaaaattgaacaaa |
50808337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 68 - 400
Target Start/End: Complemental strand, 50867858 - 50867526
Alignment:
| Q |
68 |
aatcacgtaacatgccattgcacatgtttatcaaaggtctagaaaagttacaaaccaattgtttagcatactttaatttcaggaatcaaacttgaagtct |
167 |
Q |
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||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50867858 |
aatcatgtaacatgccattgaacatgtttatcaaaggtctagaaaagttacaaaccaattgtttagcatactttaatttcaggaatcaaacttgaagtct |
50867759 |
T |
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| Q |
168 |
gaaagtaaagcaatgcaaagcctaaaattcaaaacttaatgttgttgcacatgggaatcccaatttggaatcacaaccaaatgaatgtcaacccaatttt |
267 |
Q |
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| T |
50867758 |
gaaagtaaagcaatgcaaagcctaaaattcaaaacttaatgttgttgcacatgggaatcccaatttggaatcacaaccaaatgaatgtcaacccaatttt |
50867659 |
T |
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| Q |
268 |
taacacaatgaaacaatcatcaatggaggtaaccaagcaaaggctaacaaacaatgtaacaaagcacaaaccttttttcaaattattctactttaatttc |
367 |
Q |
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| T |
50867658 |
taacacaatgaaacaatcatcaatggaagtaaccaagcaaaggctaacaaacaatgtaacaaagcacaaaccttttttcaaattattctactttaatttc |
50867559 |
T |
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| Q |
368 |
aaacagggcaacaaagctacaaaattgaacaaa |
400 |
Q |
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| T |
50867558 |
aaacagggcaacaaagctacaaaattgaacaaa |
50867526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 16 - 55
Target Start/End: Complemental strand, 50867925 - 50867886
Alignment:
| Q |
16 |
atatgattgtgagtggtttcaaaaattccaaatcatggtt |
55 |
Q |
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| T |
50867925 |
atatgattgtgagtggtttcaaaaattccaaatcatggtt |
50867886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 321; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 68 - 400
Target Start/End: Complemental strand, 19055412 - 19055080
Alignment:
| Q |
68 |
aatcacgtaacatgccattgcacatgtttatcaaaggtctagaaaagttacaaaccaattgtttagcatactttaatttcaggaatcaaacttgaagtct |
167 |
Q |
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| T |
19055412 |
aatcatgtaacatgccattgaacatgtttatcaaaggtctagaaaagttacaaaccaattgtttagcatactttaatttcaggaatcaaacttgaagtct |
19055313 |
T |
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| Q |
168 |
gaaagtaaagcaatgcaaagcctaaaattcaaaacttaatgttgttgcacatgggaatcccaatttggaatcacaaccaaatgaatgtcaacccaatttt |
267 |
Q |
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| T |
19055312 |
gaaagtaaagcaatgcaaagcctaaaattcaaaacttaatgttgttgcacatgggaatcccaatttggaatcacaaccaaatgaatgtcaacccaatttt |
19055213 |
T |
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| Q |
268 |
taacacaatgaaacaatcatcaatggaggtaaccaagcaaaggctaacaaacaatgtaacaaagcacaaaccttttttcaaattattctactttaatttc |
367 |
Q |
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| T |
19055212 |
taacacaatgaaacaatcatcaatggaagtaaccaagcaaaggctaacaaacaatgtaacaaagcacaaaccttttttcaaattattctactttaatttc |
19055113 |
T |
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| Q |
368 |
aaacagggcaacaaagctacaaaattgaacaaa |
400 |
Q |
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| T |
19055112 |
aaacagggcaacaaagctacaaaattgaacaaa |
19055080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 16 - 55
Target Start/End: Complemental strand, 19055479 - 19055440
Alignment:
| Q |
16 |
atatgattgtgagtggtttcaaaaattccaaatcatggtt |
55 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
19055479 |
atatgattgtgagtggtttcaaaaattccaaatcatggtt |
19055440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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