View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1137_low_84 (Length: 396)
Name: NF1137_low_84
Description: NF1137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1137_low_84 |
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| [»] scaffold0009 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 12 - 367
Target Start/End: Original strand, 4301701 - 4302056
Alignment:
| Q |
12 |
atgaagaacaagaaccataaccaatgagcaaataaacatgggtattggaccaaaaaaccaaagcagcaagttaagtgcaaaataaagagctcgaagaccg |
111 |
Q |
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| T |
4301701 |
atgaagaacaagaaccataaccaatgagcaaataaacatggatattggaccaaaaaaccaaagcagcaagttaagtgcaaaataaagagctcgaagaccg |
4301800 |
T |
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| Q |
112 |
agtgaccaaaaatcaccaccccttatgactgctaattccacactactgataggaacaaaactatccggtgtgcttatcaaatagtttgcatgaacaaagt |
211 |
Q |
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| T |
4301801 |
agtgaccaaaaatcaccaccccttatgactgctaattccacactactgataggaacaaaactatccggtgtgcttatcaaatagtttgcatgaacaaagt |
4301900 |
T |
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| Q |
212 |
gtcttgctgattgaataaagcatgagaaagcaaggaggaaacaggttaataagcaaatgtacttgatggaaactgcggttgcacttgtgtcaccgtagat |
311 |
Q |
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| T |
4301901 |
gtcttgctgattgaataaagcatgagaaagcaaggaggaaacaggttaataagcaaatgtacttgatggaaactgcggttgcacttgtgtcaccgtagat |
4302000 |
T |
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| Q |
312 |
taattgactttggaagagaatatttgaagtattggcaatccaagctccgattagag |
367 |
Q |
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| T |
4302001 |
taattgactttggaagagaatatttgaagtattggcaatccaagctccgattagag |
4302056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 12 - 367
Target Start/End: Original strand, 33101154 - 33101509
Alignment:
| Q |
12 |
atgaagaacaagaaccataaccaatgagcaaataaacatgggtattggaccaaaaaaccaaagcagcaagttaagtgcaaaataaagagctcgaagaccg |
111 |
Q |
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| T |
33101154 |
atgaagaacatgaaccataaccaatgagcaaataaacatgggtattggaccaaaaaaccaaagcagcaagttaagtgcaaattaaagagcttgaagaccg |
33101253 |
T |
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| Q |
112 |
agtgaccaaaaatcaccaccccttatgactgctaattccacactactgataggaacaaaactatccggtgtgcttatcaaatagtttgcatgaacaaagt |
211 |
Q |
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| T |
33101254 |
agtgaccaaaaatcaccaccccttatgactgctaattccacactactaataggaacaaaactatctggtgtgcttatcaaatagtttgcatgaacaaagc |
33101353 |
T |
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| Q |
212 |
gtcttgctgattgaataaagcatgagaaagcaaggaggaaacaggttaataagcaaatgtacttgatggaaactgcggttgcacttgtgtcaccgtagat |
311 |
Q |
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| T |
33101354 |
gtcttgcatattgaataaagcatgagaaagcaagaaggaaacaggttaataaacaaatgtacttgatggaaactgcggttgcactcgtgtcaccatagat |
33101453 |
T |
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| Q |
312 |
taattgactttggaagagaatatttgaagtattggcaatccaagctccgattagag |
367 |
Q |
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| T |
33101454 |
taattgactctggaagaaaatatttgaagtattagcaatccaagctccaattagag |
33101509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 12 - 355
Target Start/End: Original strand, 87142 - 87485
Alignment:
| Q |
12 |
atgaagaacaagaaccataaccaatgagcaaataaacatgggtattggaccaaaaaaccaaagcagcaagttaagtgcaaaataaagagctcgaagaccg |
111 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| | || ||||| || |
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| T |
87142 |
atgaagaacatgaaccataaccaatgagcaaataaacatgggtattggaccaaaaaaccaaagcagcgagttaagtgcaaaataaataccttgaagatcg |
87241 |
T |
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| Q |
112 |
agtgaccaaaaatcaccaccccttatgactgctaattccacactactgataggaacaaaactatccggtgtgcttatcaaatagtttgcatgaacaaagt |
211 |
Q |
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| T |
87242 |
agtgaccaaaaatcaccacctcttatgactgctaattccacactactaataggaacaaaactatctggtgtgcttatcaaatagtttgcatgaaaaaagt |
87341 |
T |
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| Q |
212 |
gtcttgctgattgaataaagcatgagaaagcaaggaggaaacaggttaataagcaaatgtacttgatggaaactgcggttgcacttgtgtcaccgtagat |
311 |
Q |
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||||||| ||||||||||||||||||||| |||| |||| |||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||| |
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| T |
87342 |
gtcttgcagattgaataaagcatgagaaaccaagaaggacacaggttaataagcaaatgtacttgatggaaactgcggttgccctcgtgtcaccatagat |
87441 |
T |
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| Q |
312 |
taattgactttggaagagaatatttgaagtattggcaatccaag |
355 |
Q |
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| T |
87442 |
ttattgactctggaagaaaatatttgaagtattagcagtccaag |
87485 |
T |
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