View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1137_low_89 (Length: 372)
Name: NF1137_low_89
Description: NF1137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1137_low_89 |
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Alignment Details
Target: chr3 (Bit Score: 319; Significance: 1e-180; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 1 - 360
Target Start/End: Complemental strand, 54746430 - 54746067
Alignment:
| Q |
1 |
ttgattaattaccactgcggccatgtcattgagtgccatgccaatgacaacccatgcattcataagttcattttgctcatctctgccaataagtgttagg |
100 |
Q |
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| T |
54746430 |
ttgattaattaccactgcggccatgtcattgagtgccatgccaatgacaacccatgcattcataagttcattttgctcatctctgccaataagtgttagg |
54746331 |
T |
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| Q |
101 |
accatggcaccaccaggaatgagttcagacgaacgtgatcttaaaaataatgagaaatcttgttgaaattgtgcaaagtatgttttttgcactgctggag |
200 |
Q |
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| T |
54746330 |
accatggcaccactaggaagcagttcagacgaacgtgatcttaaaaataatgagaaatcttgttgaaattgttcaaagtatgttttttgcactgctggag |
54746231 |
T |
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| Q |
201 |
ggcttgctcttgttaggtaaatattccctttgtccaatggttctatagcagcatcttgcaatgcatctggagtctgttgccaaattaattaaattaaaca |
300 |
Q |
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| T |
54746230 |
ggcttgctcttgttaggtaaatattccctttgttcaatggttctatagcagcatcttgcaatgcatctggagtctgttgccaaattaattaaattaaaca |
54746131 |
T |
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| Q |
301 |
----attatcagtgcattgttctatattatctactctttgcaaggaatatcatatatgtatatt |
360 |
Q |
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| T |
54746130 |
attaattatcagtgcattgttctatattctctactctttgcaaggaatatcatatacgtatatt |
54746067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 296 - 335
Target Start/End: Complemental strand, 54744302 - 54744263
Alignment:
| Q |
296 |
aaacaattatcagtgcattgttctatattatctactcttt |
335 |
Q |
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| T |
54744302 |
aaacaattatcagtgcattgttctatattctcttctcttt |
54744263 |
T |
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