View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1137_low_9 (Length: 735)
Name: NF1137_low_9
Description: NF1137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1137_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 661; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 661; E-Value: 0
Query Start/End: Original strand, 2 - 706
Target Start/End: Original strand, 12843340 - 12844044
Alignment:
| Q |
2 |
gcatgtcgaagaatataagtgcaatactcaacaagactaatatcaaacactatatgattctatttctacctctataggtgaaattaacactataatctct |
101 |
Q |
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||||||| || || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12843340 |
gcatgtcaaacaaaataagtgcaatactcaacaagactaatatcaaacactatatgattctatttctacctctataggtgaaattaacactataatctct |
12843439 |
T |
|
| Q |
102 |
aaaatgagttaagaacataagaatgattaatcgatcttaacagtagacattaacactataatcttgaatcttgattgaaatttacaatgtaaaatcaatc |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12843440 |
aaaatgagttaagaacataagaatgattaatcgatcttaacagtagacattaacactataatcttgaatcttgattgaaatttacaatgtaaaatcaatc |
12843539 |
T |
|
| Q |
202 |
ttaacggtacctccaagcttgaacgcgaattccgatactaaaagcacaataagcatcaatggacgcataagcaatttgatcttcataaagattctctgca |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12843540 |
ttaacggtacctccaagcttgaacgcgaattccgatactaaaagcacaataagcatcaatggacgcataagcaatttgatcttcataaagattctctgca |
12843639 |
T |
|
| Q |
302 |
ttccaattgctccttccaacttgtacaatctgatccacttcgaaatcaagccaattcctcacaattacattcatcgattcacgtgaaagattttcaccat |
401 |
Q |
| |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
12843640 |
ttccaattgctccttccaacttgtacactctgatccacttcgaaatcaagccaattcctcacaattacatttatcgattcacgtgaaagattttcaccat |
12843739 |
T |
|
| Q |
402 |
tgaacctgtaatgcctcagatcctgaggatctttccacatttgcaagcgatgatcaaatctctccagccttctacgatcagcagcgttccagaatccaac |
501 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12843740 |
tgaacctgtaatgcctcagatcctgaggatctttccacatttgcaagcgatgatcaaatctctccagccttctacgatcagcagcgttccagaatccaac |
12843839 |
T |
|
| Q |
502 |
gaaggtgttcttaggatgacggagaaaattgcagagactgaccggaatcatatctgcgcgagagaggtggaagataagacagctgccactgatgcataac |
601 |
Q |
| |
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||||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
12843840 |
gaaggtgttcttaggatgacggagaaagttgcagagactaaccggaatcatatcggcgagagagaggtggaagataagacagctgccactgatgcataac |
12843939 |
T |
|
| Q |
602 |
tgtagcgtgtcggcgggaggatcaaggttgccgggagtccattgaacgccaaggccgacaacgagattacggttacggagattacggttgcggcgaaggt |
701 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |
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| T |
12843940 |
tgtagcgtgtcggcgggaggatcaaggttgccgggagtccattgaacgccaaggccgacaatgagattacggttacagagattacggttgcggcgaaggt |
12844039 |
T |
|
| Q |
702 |
attga |
706 |
Q |
| |
|
||||| |
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|
| T |
12844040 |
attga |
12844044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 86 - 681
Target Start/End: Complemental strand, 12862057 - 12861462
Alignment:
| Q |
86 |
taacactataatctctaaaatgagttaagaacataagaatgattaatcgatcttaacagtagacattaacactataatcttgaatcttgattgaaattta |
185 |
Q |
| |
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||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12862057 |
taacactataatctctaaaatgagttacgaacataagagtgattaatcgatcttaacagtagacattaacactataatcttgaatcttgattgaaattta |
12861958 |
T |
|
| Q |
186 |
caatgtaaaatcaatcttaacggtacctccaagcttgaacgcgaattccgatactaaaagcacaataagcatcaatggacgcataagcaatttgatcttc |
285 |
Q |
| |
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|| |||||||| ||||||| |||||||||||||||| | | |||||||||| ||| ||| ||||||||||||||||||||||||||| ||||| | | |
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| T |
12861957 |
gaaagtaaaatcgatcttaagggtacctccaagcttggaaacaaattccgataagaaacgcaaaataagcatcaatggacgcataagcaacttgatgtgc |
12861858 |
T |
|
| Q |
286 |
ataaagattctctgcattccaattgctccttccaacttgtacaatctgatccacttcgaaatcaagccaattcctcacaattacattcatcgattcacgt |
385 |
Q |
| |
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||||||||||||| ||||||||| ||||| ||||||| | | |||||||||||| |||| |||| || |||||||||||| ||| ||||||| |||| |
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| T |
12861857 |
ataaagattctcttgattccaattactcctaccaacttcaatactctgatccactttgaaaccaagacatttcctcacaatttcatccatcgataaacgt |
12861758 |
T |
|
| Q |
386 |
gaaagattttcaccattgaacctgtaatgcctcagatcctgaggatctttccacatttgcaagcgatgatcaaatctctccagccttctacgatcagcag |
485 |
Q |
| |
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|||||| ||||||||||||| ||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| | |||||||| |||| |
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| T |
12861757 |
gaaagagcttcaccattgaactcgtaattcctcaaatcctgaggatttttccacatttgcaagcgatgatcaaatctctccagcttcctacgatctgcag |
12861658 |
T |
|
| Q |
486 |
cgttccagaatccaacgaaggtgttcttaggatgacggagaaaattgcagagactgaccggaatcatatctgcgcgagagaggtggaagataagacagct |
585 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12861657 |
cgttccagaatccaacgaaggtgttcttaggatgacggagaaaattgcagagactgaccggaatcatatctgcgcgagagaggtggaagataagacagct |
12861558 |
T |
|
| Q |
586 |
gccactgatgcataactgtagcgtgtcggcgggaggatcaaggttgccgggagtccattgaacgccaaggccgacaacgagattacggttacggag |
681 |
Q |
| |
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||||| ||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| ||||||||||| ||||||| ||| ||||| |
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| T |
12861557 |
gccaccgatgcataactgtagcgtgtcggcgggaggatcaaggttgcggttagtccattgaacgccgaggccgacaacaagattacagttgcggag |
12861462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 87 - 161
Target Start/End: Original strand, 13125763 - 13125837
Alignment:
| Q |
87 |
aacactataatctctaaaatgagttaagaacataagaatgattaatcgatcttaacagtagacattaacactata |
161 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||| |||||||||||||| |
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| T |
13125763 |
aacactataatctctaaaatgagttaggaacataagagtgattaatcgatcttaacagtacacattaacactata |
13125837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 143 - 183
Target Start/End: Original strand, 13125589 - 13125629
Alignment:
| Q |
143 |
agtagacattaacactataatcttgaatcttgattgaaatt |
183 |
Q |
| |
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|||||||||||||||||| ||||||||||||||| |||||| |
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| T |
13125589 |
agtagacattaacactatgatcttgaatcttgatagaaatt |
13125629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 63
Target Start/End: Original strand, 13125540 - 13125587
Alignment:
| Q |
16 |
ataagtgcaatactcaacaagactaatatcaaacactatatgattcta |
63 |
Q |
| |
|
|||||||||||||||||||| ||||| |||||||||| ||| |||||| |
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|
| T |
13125540 |
ataagtgcaatactcaacaacactaaaatcaaacactgtattattcta |
13125587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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