View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1137_low_98 (Length: 363)
Name: NF1137_low_98
Description: NF1137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1137_low_98 |
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Alignment Details
Target: chr4 (Bit Score: 328; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 1 - 356
Target Start/End: Complemental strand, 23989487 - 23989132
Alignment:
| Q |
1 |
ttgtgcagtccgttccatagatactcattgtaatcatcattccacccgtgatgatcctcatacaaattctcattgcactgaccctcgatcgaaactacat |
100 |
Q |
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| T |
23989487 |
ttgtgcagtccgttccatagatactcattgtaatcatcattccacccgtgatgatcctcatacaaattctcattgcactgaccctcgatcgaaactacat |
23989388 |
T |
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| Q |
101 |
tcaaccgatcctcctttgaaacttcacataacatatcgtcgtaatgatcctcctcactcatctgatcatcctcatattcattctgttgatgctcaggtga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23989387 |
tcaaccgatcctcctttgaaacttcacataacatatcgtcgtaatgatcctcctcactcatctgatcatcctcatattcattctgttgatgctcaggtga |
23989288 |
T |
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| Q |
201 |
atcatcatacaactgatcctcatgcatatctccattcttctgattctcaaccgaattctacacatnnnnnnnntaataagttaatgagaccacatcatca |
300 |
Q |
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| T |
23989287 |
atcatcatacaactgatcctcatgcgtatctccattcttctgattctcaaccgaattctacacataaaaataataataagttaatgagaccacatcatca |
23989188 |
T |
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| Q |
301 |
ttaattatcataaccataataagcaacgaagaacaattttaaacaaagaataatct |
356 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23989187 |
ttaattatcataaccataataagcaacgaagaacaattttaaacaaagaataatct |
23989132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 98 - 265
Target Start/End: Complemental strand, 23982612 - 23982442
Alignment:
| Q |
98 |
cattcaaccgatcctcctttgaaacttcacataacatatcgtcgtaatgatcctcctcactcatctgatcatcctcatattcattctgttgatgctcagg |
197 |
Q |
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||||||||||| | || ||||||||||| ||||||||||| || ||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
23982612 |
cattcaaccgaccgtcgtttgaaacttcgcataacatatcctcataatgatcctcatcactcatctgatcatcctcatcttcattctgttgatgctcagg |
23982513 |
T |
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| Q |
198 |
---tgaatcatcatacaactgatcctcatgcatatctccattcttctgattctcaaccgaattctacacat |
265 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||| ||||| |||||||||||||||||| |
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| T |
23982512 |
tactgaatcatcatacaactgatcctcatgcatatccccattcttcagattcacaaccgaattctacacat |
23982442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 33 - 95
Target Start/End: Complemental strand, 23982770 - 23982708
Alignment:
| Q |
33 |
atcatcattccacccgtgatgatcctcatacaaattctcattgcactgaccctcgatcgaaac |
95 |
Q |
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|||||| |||||||| ||||| ||||||| |||||||||||| ||||||||||| || ||||| |
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| T |
23982770 |
atcatcgttccacccatgatgttcctcatgcaaattctcattccactgaccctcaattgaaac |
23982708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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