View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1137_low_99 (Length: 359)

Name: NF1137_low_99
Description: NF1137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1137_low_99
NF1137_low_99
[»] chr1 (38 HSPs)
chr1 (31-184)||(30618997-30619150)
chr1 (108-201)||(21846305-21846398)
chr1 (109-216)||(23528656-23528763)
chr1 (108-201)||(25146805-25146898)
chr1 (108-211)||(9352090-9352193)
chr1 (109-211)||(13276293-13276395)
chr1 (106-211)||(18304837-18304943)
chr1 (110-212)||(42180091-42180193)
chr1 (108-211)||(9955062-9955165)
chr1 (108-211)||(18337549-18337651)
chr1 (108-211)||(41032697-41032800)
chr1 (108-210)||(13100190-13100292)
chr1 (111-187)||(12513283-12513359)
chr1 (108-211)||(9327242-9327345)
chr1 (109-195)||(14074413-14074499)
chr1 (111-187)||(19009997-19010073)
chr1 (108-194)||(17056043-17056129)
chr1 (109-196)||(12800623-12800710)
chr1 (116-211)||(16125482-16125580)
chr1 (105-175)||(34478833-34478903)
chr1 (110-211)||(17869777-17869873)
chr1 (105-201)||(8772700-8772796)
chr1 (109-195)||(9128883-9128969)
chr1 (107-187)||(27917503-27917583)
chr1 (101-160)||(16417301-16417360)
chr1 (108-203)||(24117006-24117101)
chr1 (108-154)||(47785791-47785837)
chr1 (252-288)||(17055996-17056032)
chr1 (254-288)||(9327212-9327246)
chr1 (254-288)||(9955032-9955066)
chr1 (254-288)||(12513379-12513413)
chr1 (210-240)||(13276207-13276237)
chr1 (252-290)||(18891486-18891524)
chr1 (254-288)||(19009943-19009977)
chr1 (252-288)||(13100389-13100425)
chr1 (254-290)||(16125450-16125486)
chr1 (252-288)||(23528855-23528891)
chr1 (252-288)||(25146597-25146633)
[»] chr8 (34 HSPs)
chr8 (256-359)||(30240192-30240296)
chr8 (108-211)||(5922048-5922151)
chr8 (109-211)||(17646993-17647095)
chr8 (111-211)||(15294672-15294772)
chr8 (111-211)||(15475041-15475141)
chr8 (106-211)||(31424160-31424265)
chr8 (113-211)||(3094280-3094378)
chr8 (108-211)||(11879599-11879702)
chr8 (108-211)||(11897015-11897118)
chr8 (109-211)||(45403029-45403131)
chr8 (111-211)||(19704482-19704583)
chr8 (110-211)||(29384343-29384444)
chr8 (108-184)||(477101-477177)
chr8 (108-211)||(15761466-15761569)
chr8 (99-211)||(22910229-22910341)
chr8 (108-187)||(24056619-24056698)
chr8 (108-156)||(23136348-23136396)
chr8 (148-211)||(6810861-6810924)
chr8 (108-211)||(27836491-27836594)
chr8 (256-292)||(26879778-26879814)
chr8 (210-281)||(6810979-6811048)
chr8 (254-290)||(3094248-3094284)
chr8 (108-194)||(7489331-7489414)
chr8 (110-154)||(9036757-9036801)
chr8 (252-288)||(29384206-29384242)
chr8 (105-160)||(17788384-17788439)
chr8 (210-240)||(7489224-7489254)
chr8 (252-286)||(26574948-26574982)
chr8 (108-150)||(27672303-27672345)
chr8 (36-81)||(2997740-2997785)
chr8 (118-211)||(15231733-15231826)
chr8 (158-211)||(23142224-23142277)
chr8 (254-287)||(45403127-45403160)
chr8 (108-156)||(9212300-9212348)
[»] chr6 (43 HSPs)
chr6 (108-211)||(30912439-30912542)
chr6 (109-211)||(17250057-17250159)
chr6 (108-211)||(6943487-6943590)
chr6 (104-211)||(27233304-27233411)
chr6 (109-211)||(26053323-26053425)
chr6 (109-211)||(26073376-26073478)
chr6 (108-195)||(17543783-17543870)
chr6 (108-211)||(18491064-18491167)
chr6 (109-195)||(15528153-15528239)
chr6 (109-196)||(7918423-7918510)
chr6 (108-211)||(11327598-11327701)
chr6 (108-187)||(23897810-23897889)
chr6 (111-186)||(3573984-3574059)
chr6 (108-183)||(5422803-5422878)
chr6 (108-211)||(10509050-10509153)
chr6 (108-211)||(19748332-19748435)
chr6 (107-164)||(7223517-7223574)
chr6 (117-211)||(22498912-22499006)
chr6 (108-211)||(17103201-17103297)
chr6 (129-212)||(4841945-4842026)
chr6 (112-183)||(2912302-2912373)
chr6 (108-186)||(10958239-10958317)
chr6 (108-211)||(21354747-21354842)
chr6 (112-201)||(33583766-33583855)
chr6 (118-202)||(8285759-8285843)
chr6 (136-202)||(18490997-18491063)
chr6 (210-288)||(7918244-7918319)
chr6 (210-288)||(19748491-19748568)
chr6 (116-160)||(8545043-8545087)
chr6 (215-288)||(10508911-10508984)
chr6 (254-288)||(7223610-7223644)
chr6 (256-285)||(18490536-18490565)
chr6 (136-201)||(18490922-18490987)
chr6 (252-289)||(20432421-20432458)
chr6 (255-288)||(23897910-23897943)
chr6 (210-288)||(26053190-26053267)
chr6 (210-288)||(26073243-26073320)
chr6 (112-201)||(27890137-27890225)
chr6 (252-288)||(4841723-4841759)
chr6 (252-288)||(17103394-17103430)
chr6 (252-288)||(17543624-17543660)
chr6 (252-288)||(22498334-22498370)
chr6 (256-292)||(33593053-33593089)
[»] chr3 (37 HSPs)
chr3 (108-211)||(29067283-29067386)
chr3 (106-211)||(15806533-15806637)
chr3 (108-211)||(28745769-28745872)
chr3 (104-211)||(27676351-27676458)
chr3 (109-211)||(20756039-20756141)
chr3 (110-211)||(3449319-3449419)
chr3 (109-201)||(24649726-24649818)
chr3 (109-211)||(30727718-30727820)
chr3 (118-211)||(21963438-21963531)
chr3 (118-211)||(21985874-21985967)
chr3 (112-201)||(39427905-39427994)
chr3 (108-211)||(24620227-24620333)
chr3 (108-201)||(8156168-8156261)
chr3 (119-211)||(10872973-10873065)
chr3 (108-175)||(25870439-25870506)
chr3 (109-211)||(22137278-22137380)
chr3 (114-211)||(17064326-17064423)
chr3 (108-201)||(17796376-17796469)
chr3 (108-201)||(19104816-19104909)
chr3 (110-187)||(28135723-28135800)
chr3 (127-201)||(22494818-22494892)
chr3 (108-201)||(17796485-17796578)
chr3 (108-201)||(19104925-19105018)
chr3 (113-157)||(42696870-42696914)
chr3 (109-211)||(13005927-13006029)
chr3 (210-288)||(25870216-25870293)
chr3 (252-292)||(10872540-10872580)
chr3 (108-152)||(22356139-22356183)
chr3 (252-283)||(3449209-3449240)
chr3 (254-288)||(8156127-8156161)
chr3 (254-288)||(22356049-22356083)
chr3 (252-289)||(13006089-13006126)
chr3 (252-289)||(24620090-24620127)
chr3 (252-288)||(6136463-6136499)
chr3 (252-288)||(20756221-20756257)
chr3 (252-288)||(28745975-28746011)
chr3 (252-288)||(39428102-39428138)
[»] chr4 (36 HSPs)
chr4 (108-210)||(5361991-5362093)
chr4 (108-211)||(8889227-8889330)
chr4 (109-201)||(8011253-8011345)
chr4 (110-211)||(7044728-7044829)
chr4 (105-201)||(13023563-13023660)
chr4 (109-217)||(9770112-9770220)
chr4 (108-211)||(13551649-13551752)
chr4 (108-211)||(18459735-18459838)
chr4 (108-201)||(24719516-24719609)
chr4 (108-187)||(6347115-6347194)
chr4 (113-211)||(7815561-7815659)
chr4 (110-211)||(17466080-17466181)
chr4 (106-211)||(36120821-36120926)
chr4 (108-180)||(7452419-7452491)
chr4 (111-194)||(5375666-5375749)
chr4 (109-211)||(4156763-4156865)
chr4 (108-186)||(23065015-23065093)
chr4 (109-211)||(9911438-9911541)
chr4 (108-211)||(10142898-10143001)
chr4 (109-160)||(9149813-9149864)
chr4 (105-159)||(5846458-5846512)
chr4 (108-207)||(37240261-37240355)
chr4 (210-288)||(5375822-5375900)
chr4 (252-288)||(4157051-4157087)
chr4 (107-153)||(8744087-8744133)
chr4 (254-288)||(9770210-9770244)
chr4 (254-288)||(9911408-9911442)
chr4 (253-283)||(10143100-10143130)
chr4 (253-290)||(13023667-13023704)
chr4 (211-240)||(23064902-23064931)
chr4 (210-288)||(36120982-36121058)
chr4 (108-160)||(610668-610720)
chr4 (252-292)||(5943084-5943124)
chr4 (252-292)||(7045208-7045248)
chr4 (252-292)||(10394874-10394914)
chr4 (253-285)||(23064793-23064825)
[»] chr5 (23 HSPs)
chr5 (109-209)||(20923718-20923818)
chr5 (109-211)||(43234868-43234970)
chr5 (108-201)||(22645756-22645849)
chr5 (110-211)||(23172459-23172560)
chr5 (108-211)||(18051557-18051660)
chr5 (108-211)||(19578941-19579044)
chr5 (108-211)||(21059183-21059285)
chr5 (110-211)||(18843716-18843817)
chr5 (109-211)||(38158281-38158383)
chr5 (117-211)||(27340213-27340307)
chr5 (111-183)||(19042444-19042516)
chr5 (210-288)||(20321100-20321178)
chr5 (113-182)||(24106645-24106714)
chr5 (111-175)||(20320926-20320990)
chr5 (112-211)||(41427087-41427187)
chr5 (110-210)||(13350088-13350188)
chr5 (120-182)||(41688721-41688782)
chr5 (210-288)||(18843873-18843950)
chr5 (252-289)||(19579142-19579179)
chr5 (158-211)||(19979648-19979701)
chr5 (108-152)||(13342072-13342116)
chr5 (108-160)||(24647938-24647990)
chr5 (252-288)||(38158158-38158194)
[»] chr7 (42 HSPs)
chr7 (108-211)||(24725504-24725607)
chr7 (108-211)||(26281336-26281439)
chr7 (108-211)||(39182259-39182361)
chr7 (109-211)||(22687691-22687793)
chr7 (108-201)||(8343837-8343930)
chr7 (116-201)||(8571250-8571335)
chr7 (107-211)||(14055249-14055353)
chr7 (107-211)||(14365277-14365381)
chr7 (108-211)||(8330072-8330175)
chr7 (109-216)||(11326386-11326493)
chr7 (110-211)||(5058530-5058631)
chr7 (118-211)||(11324988-11325081)
chr7 (109-211)||(44944872-44944978)
chr7 (111-211)||(8346560-8346660)
chr7 (108-211)||(7730370-7730472)
chr7 (108-211)||(9685271-9685374)
chr7 (109-211)||(4247356-4247458)
chr7 (109-211)||(21846453-21846554)
chr7 (109-211)||(24990098-24990200)
chr7 (107-195)||(27221416-27221504)
chr7 (109-211)||(5715290-5715391)
chr7 (109-211)||(30294175-30294274)
chr7 (108-195)||(8630001-8630088)
chr7 (113-182)||(4574475-4574544)
chr7 (214-288)||(7730253-7730327)
chr7 (108-176)||(26617538-26617606)
chr7 (108-187)||(21157825-21157904)
chr7 (252-290)||(26565440-26565478)
chr7 (210-288)||(21846341-21846417)
chr7 (147-194)||(17811385-17811432)
chr7 (149-211)||(1977692-1977754)
chr7 (254-288)||(8343797-8343831)
chr7 (254-288)||(22687661-22687695)
chr7 (254-288)||(27221516-27221550)
chr7 (254-288)||(27509940-27509974)
chr7 (210-288)||(4247514-4247591)
chr7 (252-289)||(17741908-17741945)
chr7 (252-289)||(17811547-17811584)
chr7 (115-164)||(20570953-20571002)
chr7 (253-289)||(21157521-21157557)
chr7 (252-288)||(24725366-24725402)
chr7 (254-286)||(26281219-26281251)
[»] scaffold0186 (3 HSPs)
scaffold0186 (108-211)||(8442-8545)
scaffold0186 (210-288)||(8601-8676)
scaffold0186 (252-285)||(8705-8738)
[»] chr2 (38 HSPs)
chr2 (108-211)||(23863348-23863451)
chr2 (108-195)||(31238020-31238107)
chr2 (108-211)||(30432418-30432521)
chr2 (108-211)||(36429847-36429950)
chr2 (108-211)||(20063713-20063816)
chr2 (110-211)||(35565981-35566082)
chr2 (108-196)||(1404782-1404870)
chr2 (108-210)||(1690790-1690892)
chr2 (106-211)||(15588877-15588981)
chr2 (109-196)||(19491855-19491944)
chr2 (111-211)||(25539253-25539353)
chr2 (108-211)||(17995054-17995157)
chr2 (108-196)||(27750194-27750282)
chr2 (111-211)||(31578007-31578106)
chr2 (108-211)||(5395675-5395778)
chr2 (145-211)||(31023259-31023325)
chr2 (145-211)||(34841592-34841658)
chr2 (215-288)||(13502567-13502640)
chr2 (109-201)||(16766710-16766802)
chr2 (108-160)||(19245152-19245204)
chr2 (108-211)||(15266081-15266184)
chr2 (109-153)||(29660893-29660937)
chr2 (217-289)||(19519538-19519610)
chr2 (106-160)||(974188-974242)
chr2 (110-188)||(15516609-15516687)
chr2 (108-142)||(15627654-15627688)
chr2 (252-290)||(16767049-16767087)
chr2 (252-290)||(16767186-16767224)
chr2 (109-187)||(19257569-19257647)
chr2 (114-181)||(27406782-27406851)
chr2 (254-288)||(31237974-31238008)
chr2 (254-288)||(31578102-31578136)
chr2 (119-211)||(13503069-13503162)
chr2 (252-285)||(20034054-20034087)
chr2 (255-288)||(27406993-27407026)
chr2 (256-289)||(34841784-34841817)
chr2 (252-292)||(19245853-19245893)
chr2 (252-288)||(30433014-30433050)
[»] scaffold0048 (2 HSPs)
scaffold0048 (106-201)||(48825-48920)
scaffold0048 (149-211)||(61410-61472)
[»] scaffold0510 (1 HSPs)
scaffold0510 (108-187)||(152-231)
[»] scaffold0417 (1 HSPs)
scaffold0417 (108-211)||(7482-7585)
[»] scaffold0042 (3 HSPs)
scaffold0042 (108-187)||(93757-93834)
scaffold0042 (252-288)||(93599-93635)
scaffold0042 (255-288)||(93703-93736)
[»] scaffold0036 (1 HSPs)
scaffold0036 (107-187)||(37217-37297)
[»] scaffold0603 (1 HSPs)
scaffold0603 (108-187)||(9071-9150)
[»] scaffold0115 (1 HSPs)
scaffold0115 (109-182)||(35115-35188)
[»] scaffold0259 (1 HSPs)
scaffold0259 (217-292)||(18548-18623)
[»] scaffold0016 (1 HSPs)
scaffold0016 (252-288)||(56319-56355)


Alignment Details
Target: chr1 (Bit Score: 126; Significance: 6e-65; HSPs: 38)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 31 - 184
Target Start/End: Original strand, 30618997 - 30619150
Alignment:
Q  31 agaagcatgtaaacatattcttgcaaatcaccatgaagaaaaacattgttttagtcgtttgagctaagagttgaaagcattgttgtcaaaatcccgactt 130  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||  ||||||||||||||||||||||    
T  30618997 agaagcatgtaaacatattcttgcaattcaccatgaagaaaaacattgttctagtcatttgagctaagagttgaaaatattgttgtcaaaatcccgactt 30619096  T
Q  131 aaatcctaaaatccaggattttgcgactttcttctccttcaacgactcaaatcc 184  Q
    |||||||||||||||||||||||||| ||||||| |||||||||||||||||||    
T  30619097 aaatcctaaaatccaggattttgcgattttcttcaccttcaacgactcaaatcc 30619150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 108 - 201
Target Start/End: Complemental strand, 21846398 - 21846305
Alignment:
Q  108 cattgttgtcaaaatcccgacttaaatcctaaaatccaggattttgcgactttcttctccttcaacgactcaaatccataatagaatcccaaaa 201  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| ||||||| |||||    
T  21846398 cattgttgtcaaaatcccgagttaaatcctaaaatccaggattttgcgacttttttcaccttcaacgactcaaatccatagtagaatctcaaaa 21846305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 109 - 216
Target Start/End: Original strand, 23528656 - 23528763
Alignment:
Q  109 attgttgtcaaaatcccgacttaaatcctaaaatccaggattttgcgactttcttctccttcaacgactcaaatccataatagaatcccaaaacaggcaa 208  Q
    ||||||||||||||||| ||||||||| |||||| |||||||||||||||||||||  ||||||||||||||||||||| |||||||| |||| ||||||    
T  23528656 attgttgtcaaaatcccaacttaaatcttaaaattcaggattttgcgactttcttcatcttcaacgactcaaatccatagtagaatcctaaaataggcaa 23528755  T
Q  209 aatatatc 216  Q
    ||| ||||    
T  23528756 aatctatc 23528763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 108 - 201
Target Start/End: Complemental strand, 25146898 - 25146805
Alignment:
Q  108 cattgttgtcaaaatcccgacttaaatcctaaaatccaggattttgcgactttcttctccttcaacgactcaaatccataatagaatcccaaaa 201  Q
    ||||||||||||||||| ||||||||||||||||| ||| ||||||||||||||||| ||||||||||||||||| |||| |||||||||||||    
T  25146898 cattgttgtcaaaatcctgacttaaatcctaaaattcagaattttgcgactttcttcaccttcaacgactcaaattcatagtagaatcccaaaa 25146805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 108 - 211
Target Start/End: Complemental strand, 9352193 - 9352090
Alignment:
Q  108 cattgttgtcaaaatcccgacttaaatcctaaaatccaggattttgcgactttcttctccttcaacgactcaaatccataatagaatcccaaaacaggca 207  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| |||||||||| |||  ||| |||||||| || ||    
T  9352193 cattgttgtcaaaatcccgacttaaatcctaaaatccagggttttgcgactttcttcaccttcaaagactcaaatctatagcagagtcccaaaatagaca 9352094  T
Q  208 aaat 211  Q
    ||||    
T  9352093 aaat 9352090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 109 - 211
Target Start/End: Complemental strand, 13276395 - 13276293
Alignment:
Q  109 attgttgtcaaaatcccgacttaaatcctaaaatccaggattttgcgactttcttctccttcaacgactcaaatccataatagaatcccaaaacaggcaa 208  Q
    ||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||  ||||||||||  ||||||||| |||||||| |||| ||||||    
T  13276395 attgttgtcaaaatcccgatttaaatcctaaaatctaggattttgcgactttcttcatcttcaacgacctaaatccatagtagaatcctaaaataggcaa 13276296  T
Q  209 aat 211  Q
    |||    
T  13276295 aat 13276293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 106 - 211
Target Start/End: Complemental strand, 18304943 - 18304837
Alignment:
Q  106 agcattgttgtcaaaatcccgacttaaatcctaaaatccaggattttgcgactttcttctccttc-aacgactcaaatccataatagaatcccaaaacag 204  Q
    |||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||| |||| ||||||| ||||| ||    
T  18304943 agcattgttgtcaaaatcccaacttaaatcctaaaatccagtattttgcgactttcttcaccttcaaacgactcaaattcatagtagaatctcaaaatag 18304844  T
Q  205 gcaaaat 211  Q
     ||||||    
T  18304843 acaaaat 18304837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 110 - 212
Target Start/End: Complemental strand, 42180193 - 42180091
Alignment:
Q  110 ttgttgtcaaaatcccgacttaaatcctaaaatccaggattttgcgactttcttctccttcaacgactcaaatccataatagaatcccaaaacaggcaaa 209  Q
    |||||||||||||||| |||||||| ||||||| ||||||||||||||||||||| |||||||||| ||||||||||| ||||||  ||||| |||||||    
T  42180193 ttgttgtcaaaatcccaacttaaattctaaaattcaggattttgcgactttcttccccttcaacgagtcaaatccatagtagaatttcaaaataggcaaa 42180094  T
Q  210 ata 212  Q
    |||    
T  42180093 ata 42180091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 108 - 211
Target Start/End: Complemental strand, 9955165 - 9955062
Alignment:
Q  108 cattgttgtcaaaatcccgacttaaatcctaaaatccaggattttgcgactttcttctccttcaacgactcaaatccataatagaatcccaaaacaggca 207  Q
    |||||||||||||||||| ||||||||||||||||  |||||||||||||||||||| |||||||||||| |||||||   ||||||||||||| | |||    
T  9955165 cattgttgtcaaaatcccaacttaaatcctaaaatttaggattttgcgactttcttcaccttcaacgacttaaatccaatgtagaatcccaaaataagca 9955066  T
Q  208 aaat 211  Q
    ||||    
T  9955065 aaat 9955062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 108 - 211
Target Start/End: Complemental strand, 18337651 - 18337549
Alignment:
Q  108 cattgttgtcaaaatcccgacttaaatcctaaaatccaggattttgcgactttcttctccttcaacgactcaaatccataatagaatcccaaaacaggca 207  Q
    |||||||||||||||||||||||| | |||||||||||||||||||| ||||| ||| ||||||||||||||||||||||  |||| ||||||| |||||    
T  18337651 cattgttgtcaaaatcccgacttata-cctaaaatccaggattttgcaactttattcaccttcaacgactcaaatccatagcagaaccccaaaataggca 18337553  T
Q  208 aaat 211  Q
    ||||    
T  18337552 aaat 18337549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 108 - 211
Target Start/End: Complemental strand, 41032800 - 41032697
Alignment:
Q  108 cattgttgtcaaaatcccgacttaaatcctaaaatccaggattttgcgactttcttctccttcaacgactcaaatccataatagaatcccaaaacaggca 207  Q
    |||||||||||||||| ||||||||||| || ||| ||||||||||||| ||||||| |||||||||||||||||||||| |||||| | |||| |||||    
T  41032800 cattgttgtcaaaatctcgacttaaatcgtagaattcaggattttgcgattttcttcaccttcaacgactcaaatccatagtagaattctaaaataggca 41032701  T
Q  208 aaat 211  Q
    ||||    
T  41032700 aaat 41032697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 108 - 210
Target Start/End: Original strand, 13100190 - 13100292
Alignment:
Q  108 cattgttgtcaaaatcccgacttaaatcctaaaatccaggattttgcgactttcttctccttcaacgactcaaatccataatagaatcccaaaacaggca 207  Q
    |||| ||||||||||||| |||||||| |||||||| |||||||| ||||||||||| | |||||||||||||||||||| |||||||| |||| |||||    
T  13100190 cattattgtcaaaatcccaacttaaattctaaaatcgaggattttacgactttcttcacgttcaacgactcaaatccatagtagaatcctaaaataggca 13100289  T
Q  208 aaa 210  Q
    |||    
T  13100290 aaa 13100292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 111 - 187
Target Start/End: Original strand, 12513283 - 12513359
Alignment:
Q  111 tgttgtcaaaatcccgacttaaatcctaaaatccaggattttgcgactttcttctccttcaacgactcaaatccata 187  Q
    |||||||||||||||||||||||||||| |||| ||||||||||||||||||||  |||||||||||||||||||||    
T  12513283 tgttgtcaaaatcccgacttaaatcctacaatctaggattttgcgactttcttcagcttcaacgactcaaatccata 12513359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 108 - 211
Target Start/End: Complemental strand, 9327345 - 9327242
Alignment:
Q  108 cattgttgtcaaaatcccgacttaaatcctaaaatccaggattttgcgactttcttctccttcaacgactcaaatccataatagaatcccaaaacaggca 207  Q
    ||||||||| ||||||| |||||||||||||||||  ||| |||||||||||||| | |||||||||||||||||| ||| || |||||||||| || ||    
T  9327345 cattgttgttaaaatcctgacttaaatcctaaaatttagggttttgcgactttctacaccttcaacgactcaaatctatagtaaaatcccaaaatagaca 9327246  T
Q  208 aaat 211  Q
    ||||    
T  9327245 aaat 9327242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 109 - 195
Target Start/End: Complemental strand, 14074499 - 14074413
Alignment:
Q  109 attgttgtcaaaatcccgacttaaatcctaaaatccaggattttgcgactttcttctccttcaacgactcaaatccataatagaatc 195  Q
    |||||||||||||||||| |||||||||||||||  ||||||||||||||||||||   |||||||||||||||||| | |||||||    
T  14074499 attgttgtcaaaatcccgtcttaaatcctaaaatgtaggattttgcgactttcttcatgttcaacgactcaaatccagagtagaatc 14074413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 111 - 187
Target Start/End: Complemental strand, 19010073 - 19009997
Alignment:
Q  111 tgttgtcaaaatcccgacttaaatcctaaaatccaggattttgcgactttcttctccttcaacgactcaaatccata 187  Q
    |||||||||||||| ||||||||||||||||| ||||||||||||||||| ||| ||||||| |||| |||||||||    
T  19010073 tgttgtcaaaatccggacttaaatcctaaaattcaggattttgcgacttttttcaccttcaatgacttaaatccata 19009997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 108 - 194
Target Start/End: Complemental strand, 17056129 - 17056043
Alignment:
Q  108 cattgttgtcaaaatcccgacttaaatcctaaaatccaggattttgcgactttcttctccttcaacgactcaaatccataatagaat 194  Q
    |||||| |||||||||| || |||||||||||||||||||||||||| | ||||| | |||||||||||||| ||||||| ||||||    
T  17056129 cattgtagtcaaaatcctgatttaaatcctaaaatccaggattttgcaattttctccaccttcaacgactcagatccatagtagaat 17056043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 109 - 196
Target Start/End: Complemental strand, 12800710 - 12800623
Alignment:
Q  109 attgttgtcaaaatcccgacttaaatcctaaaatccaggattttgcgactttcttctccttcaacgactcaaatccataatagaatcc 196  Q
    |||||||| |||||||| ||||||||||||||||  |||||||| ||||||||||| | |||||||||||||||| ||| || |||||    
T  12800710 attgttgtgaaaatcccaacttaaatcctaaaatttaggattttacgactttcttcacattcaacgactcaaatctatagtaaaatcc 12800623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 116 - 211
Target Start/End: Complemental strand, 16125580 - 16125482
Alignment:
Q  116 tcaaaatcccgacttaaatcctaaaatccaggattttgcgactttc---ttctccttcaacgactcaaatccataatagaatcccaaaacaggcaaaat 211  Q
    ||||||||| ||||||||||||||||| ||||||||||||||||||   ||| |||||||||||  ||||||||| || ||||  |||| |||||||||    
T  16125580 tcaaaatcctgacttaaatcctaaaattcaggattttgcgactttctttttcaccttcaacgacctaaatccatagtaaaatcttaaaataggcaaaat 16125482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 105 - 175
Target Start/End: Complemental strand, 34478903 - 34478833
Alignment:
Q  105 aagcattgttgtcaaaatcccgacttaaatcctaaaatccaggattttgcgactttcttctccttcaacga 175  Q
    |||||||||||| |||||||||||||||||| ||||||   |||||||| |||||||||| ||||||||||    
T  34478903 aagcattgttgttaaaatcccgacttaaatcttaaaatttgggattttgtgactttcttcaccttcaacga 34478833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 110 - 211
Target Start/End: Complemental strand, 17869873 - 17869777
Alignment:
Q  110 ttgttgtcaaaatcccgacttaaatcctaaaatccaggattttgcgactttcttctccttcaacgactcaaatccataatagaatcccaaaacaggcaaa 209  Q
    ||||||||||||||| |||||||||| ||||     ||||||||||||||||||| ||||| |||||  ||||||| | |||||||| |||| |||||||    
T  17869873 ttgttgtcaaaatcctgacttaaatcttaaa-----ggattttgcgactttcttcaccttcgacgacctaaatccacagtagaatcctaaaataggcaaa 17869779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 105 - 201
Target Start/End: Original strand, 8772700 - 8772796
Alignment:
Q  105 aagcattgttgtcaaaatcccgacttaaatcctaaaatccaggattttgcgactttcttctccttcaacgactcaaatccataatagaatcccaaaa 201  Q
    |||||| ||| ||| ||||||||||||||||| ||||||||| ||||||||||||| |    ||||||| |||||||||||||  ||| ||||||||    
T  8772700 aagcatggttatcagaatcccgacttaaatcccaaaatccagaattttgcgactttgtgtagcttcaacaactcaaatccatagcagagtcccaaaa 8772796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 109 - 195
Target Start/End: Complemental strand, 9128969 - 9128883
Alignment:
Q  109 attgttgtcaaaatcccgacttaaatcctaaaatccaggattttgcgactttcttctccttcaacgactcaaatccataatagaatc 195  Q
    |||||||| |||||| |||||||||||||||||   ||||| |||||||||||||| | || ||||||||||||  ||| |||||||    
T  9128969 attgttgttaaaatcacgacttaaatcctaaaaattaggatcttgcgactttcttcacatttaacgactcaaatttatagtagaatc 9128883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 107 - 187
Target Start/End: Complemental strand, 27917583 - 27917503
Alignment:
Q  107 gcattgttgtcaaaatcccgacttaaatcctaaaatccaggattttgcgactttcttctccttcaacgactcaaatccata 187  Q
    |||| ||||||||||||||||||||||| || ||||| |||||||||||| ||| ||  |||||||| || ||||| ||||    
T  27917583 gcatggttgtcaaaatcccgacttaaattctgaaatctaggattttgcgattttatttaccttcaacaacccaaattcata 27917503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 101 - 160
Target Start/End: Original strand, 16417301 - 16417360
Alignment:
Q  101 ttgaaagcattgttgtcaaaatcccgacttaaatcctaaaatccaggattttgcgacttt 160  Q
    ||||| ||||||||||||||||| ||||||||||||||| ||||| ||| |||| |||||    
T  16417301 ttgaatgcattgttgtcaaaatcgcgacttaaatcctaatatccatgatcttgcaacttt 16417360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 108 - 203
Target Start/End: Original strand, 24117006 - 24117101
Alignment:
Q  108 cattgttgtcaaaatcccgacttaaatcctaaaatccaggattttgcgactttcttctccttcaacgactcaaatccataatagaatcccaaaaca 203  Q
    ||||||||||||||| || | |||||| |||||||  | |||||| | ||||| ||| |||||||||| ||||||  ||| |||||||||||||||    
T  24117006 cattgttgtcaaaattccaatttaaattctaaaatttaagattttacaactttattcaccttcaacgattcaaatttatattagaatcccaaaaca 24117101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 108 - 154
Target Start/End: Original strand, 47785791 - 47785837
Alignment:
Q  108 cattgttgtcaaaatcccgacttaaatcctaaaatccaggattttgc 154  Q
    |||||||||||||||||| || ||||||||||||| |||||||||||    
T  47785791 cattgttgtcaaaatcccaacataaatcctaaaattcaggattttgc 47785837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 252 - 288
Target Start/End: Complemental strand, 17056032 - 17055996
Alignment:
Q  252 gtaaaatccatcaattttgattgcgattttacgattt 288  Q
    |||||||||||| ||||||||||||||||||||||||    
T  17056032 gtaaaatccatcgattttgattgcgattttacgattt 17055996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 254 - 288
Target Start/End: Complemental strand, 9327246 - 9327212
Alignment:
Q  254 aaaatccatcaattttgattgcgattttacgattt 288  Q
    |||||||||| ||||||||||||||||||||||||    
T  9327246 aaaatccatcgattttgattgcgattttacgattt 9327212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 254 - 288
Target Start/End: Complemental strand, 9955066 - 9955032
Alignment:
Q  254 aaaatccatcaattttgattgcgattttacgattt 288  Q
    |||||||||| ||||||||||||||||||||||||    
T  9955066 aaaatccatcgattttgattgcgattttacgattt 9955032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 254 - 288
Target Start/End: Original strand, 12513379 - 12513413
Alignment:
Q  254 aaaatccatcaattttgattgcgattttacgattt 288  Q
    |||||||||| ||||||||||||||||||||||||    
T  12513379 aaaatccatcgattttgattgcgattttacgattt 12513413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 210 - 240
Target Start/End: Complemental strand, 13276237 - 13276207
Alignment:
Q  210 atatatcatttataacatatatttagtatta 240  Q
    |||||||||||||||||||||||||||||||    
T  13276237 atatatcatttataacatatatttagtatta 13276207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 252 - 290
Target Start/End: Complemental strand, 18891524 - 18891486
Alignment:
Q  252 gtaaaatccatcaattttgattgcgattttacgattttt 290  Q
    ||||||| |||||||||||||||||||| ||||||||||    
T  18891524 gtaaaattcatcaattttgattgcgattctacgattttt 18891486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 254 - 288
Target Start/End: Complemental strand, 19009977 - 19009943
Alignment:
Q  254 aaaatccatcaattttgattgcgattttacgattt 288  Q
    |||||||||| ||||||||||||||||||||||||    
T  19009977 aaaatccatcgattttgattgcgattttacgattt 19009943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 252 - 288
Target Start/End: Original strand, 13100389 - 13100425
Alignment:
Q  252 gtaaaatccatcaattttgattgcgattttacgattt 288  Q
    |||||||||||| |||||||||||||||||| |||||    
T  13100389 gtaaaatccatcgattttgattgcgattttaagattt 13100425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 254 - 290
Target Start/End: Complemental strand, 16125486 - 16125450
Alignment:
Q  254 aaaatccatcaattttgattgcgattttacgattttt 290  Q
    |||||||||  ||||||||||||||||||||||||||    
T  16125486 aaaatccattgattttgattgcgattttacgattttt 16125450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 252 - 288
Target Start/End: Original strand, 23528855 - 23528891
Alignment:
Q  252 gtaaaatccatcaattttgattgcgattttacgattt 288  Q
    |||||||||||| ||||||||||||||||||| ||||    
T  23528855 gtaaaatccatcgattttgattgcgattttacaattt 23528891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 252 - 288
Target Start/End: Complemental strand, 25146633 - 25146597
Alignment:
Q  252 gtaaaatccatcaattttgattgcgattttacgattt 288  Q
    ||||||||| || ||||||||||||||||||||||||    
T  25146633 gtaaaatccttcgattttgattgcgattttacgattt 25146597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 85; Significance: 2e-40; HSPs: 34)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 256 - 359
Target Start/End: Complemental strand, 30240296 - 30240192
Alignment:
Q  256 aatccatcaattttgattgcgattttacgatttttga-gtaaaatcttgagtttgacaacccaagatctagataggtatagataagcatatcatgtgaaa 354  Q
    ||||||||||||||||||||||||||||||||||| | |||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||    
T  30240296 aatccatcaattttgattgcgattttacgattttttaagtaaaatcttgagtttgataacccaagatgtagataggtatagataagcatatcatgtgaaa 30240197  T
Q  355 aatgt 359  Q
    |||||    
T  30240196 aatgt 30240192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 108 - 211
Target Start/End: Original strand, 5922048 - 5922151
Alignment:
Q  108 cattgttgtcaaaatcccgacttaaatcctaaaatccaggattttgcgactttcttctccttcaacgactcaaatccataatagaatcccaaaacaggca 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| | ||||||| ||||||||||||| || ||    
T  5922048 cattgttgtcaaaatcccgacttaaatcctaaaatccaggattttgtgactttcttcaccttcaacgacttatatccatagtagaatcccaaaatagaca 5922147  T
Q  208 aaat 211  Q
    ||||    
T  5922148 aaat 5922151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 109 - 211
Target Start/End: Original strand, 17646993 - 17647095
Alignment:
Q  109 attgttgtcaaaatcccgacttaaatcctaaaatccaggattttgcgactttcttctccttcaacgactcaaatccataatagaatcccaaaacaggcaa 208  Q
    |||||||||||||| |||||||||||| |||||| ||||||||||||||||||||| ||||||||||||||||| |||| ||||||||||||| ||| ||    
T  17646993 attgttgtcaaaattccgacttaaatcataaaattcaggattttgcgactttcttcaccttcaacgactcaaattcatagtagaatcccaaaataggaaa 17647092  T
Q  209 aat 211  Q
    |||    
T  17647093 aat 17647095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 111 - 211
Target Start/End: Original strand, 15294672 - 15294772
Alignment:
Q  111 tgttgtcaaaatcccgacttaaatcctaaaatccaggattttgcgactttcttctccttcaacgactcaaatccataatagaatcccaaaacaggcaaaa 210  Q
    |||||| ||||||||||||||||||||||||| ||||||||||||||||| ||| |||||||||||||||||| ||| |||||| |||||| ||||||||    
T  15294672 tgttgtaaaaatcccgacttaaatcctaaaattcaggattttgcgacttttttcaccttcaacgactcaaatcgatagtagaataccaaaataggcaaaa 15294771  T
Q  211 t 211  Q
    |    
T  15294772 t 15294772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 111 - 211
Target Start/End: Original strand, 15475041 - 15475141
Alignment:
Q  111 tgttgtcaaaatcccgacttaaatcctaaaatccaggattttgcgactttcttctccttcaacgactcaaatccataatagaatcccaaaacaggcaaaa 210  Q
    |||||| ||||||||||||||||||||||||| ||||||||||||||||| ||| |||||||||||||||||| ||| |||||| |||||| ||||||||    
T  15475041 tgttgtaaaaatcccgacttaaatcctaaaattcaggattttgcgacttttttcaccttcaacgactcaaatcgatagtagaataccaaaataggcaaaa 15475140  T
Q  211 t 211  Q
    |    
T  15475141 t 15475141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 106 - 211
Target Start/End: Original strand, 31424160 - 31424265
Alignment:
Q  106 agcattgttgtcaaaatcccgacttaaatcctaaaatccaggattttgcgactttcttctccttcaacgactcaaatccataatagaatcccaaaacagg 205  Q
    |||||| |||||||||||| ||||||||| ||||||| ||||||||| ||||||||||| | ||||||||||||||||||||  |||||||||||| |||    
T  31424160 agcattattgtcaaaatcctgacttaaattctaaaattcaggattttacgactttcttccctttcaacgactcaaatccatagaagaatcccaaaatagg 31424259  T
Q  206 caaaat 211  Q
    ||||||    
T  31424260 caaaat 31424265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 113 - 211
Target Start/End: Complemental strand, 3094378 - 3094280
Alignment:
Q  113 ttgtcaaaatcccgacttaaatcctaaaatccaggattttgcgactttcttctccttcaacgactcaaatccataatagaatcccaaaacaggcaaaat 211  Q
    ||||||||||  ||||||||||| |||||| ||||||||||| ||||||||| |||||||||||||||||||||| |||||||| |||| |||||||||    
T  3094378 ttgtcaaaatttcgacttaaatcttaaaattcaggattttgctactttcttcaccttcaacgactcaaatccatagtagaatcctaaaataggcaaaat 3094280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 108 - 211
Target Start/End: Original strand, 11879599 - 11879702
Alignment:
Q  108 cattgttgtcaaaatcccgacttaaatcctaaaatccaggattttgcgactttcttctccttcaacgactcaaatccataatagaatcccaaaacaggca 207  Q
    ||||||||||||||| | ||||||||||||||||| ||||||||||| ||||||||| | |||||||||||||||| ||| |||||||| |||| ||| |    
T  11879599 cattgttgtcaaaattctgacttaaatcctaaaattcaggattttgcaactttcttcactttcaacgactcaaatctatagtagaatcctaaaataggaa 11879698  T
Q  208 aaat 211  Q
    ||||    
T  11879699 aaat 11879702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 108 - 211
Target Start/End: Original strand, 11897015 - 11897118
Alignment:
Q  108 cattgttgtcaaaatcccgacttaaatcctaaaatccaggattttgcgactttcttctccttcaacgactcaaatccataatagaatcccaaaacaggca 207  Q
    ||||||||||||||| | ||||||||||||||||| ||||||||||| ||||||||| | |||||||||||||||| ||| |||||||| |||| ||| |    
T  11897015 cattgttgtcaaaattctgacttaaatcctaaaattcaggattttgcaactttcttcactttcaacgactcaaatctatagtagaatcctaaaataggaa 11897114  T
Q  208 aaat 211  Q
    ||||    
T  11897115 aaat 11897118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 109 - 211
Target Start/End: Original strand, 45403029 - 45403131
Alignment:
Q  109 attgttgtcaaaatcccgacttaaatcctaaaatccaggattttgcgactttcttctccttcaacgactcaaatccataatagaatcccaaaacaggcaa 208  Q
    ||||||||||||||| |||||||||| |||||||||| |||||||||||||||||  |||||||||||| |||||||||  |||||| ||||| | ||||    
T  45403029 attgttgtcaaaatcgcgacttaaattctaaaatccaagattttgcgactttcttgaccttcaacgacttaaatccatagaagaatctcaaaataagcaa 45403128  T
Q  209 aat 211  Q
    |||    
T  45403129 aat 45403131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 111 - 211
Target Start/End: Complemental strand, 19704583 - 19704482
Alignment:
Q  111 tgttgtcaaaatcccgacttaaatcctaaaatcca-ggattttgcgactttcttctccttcaacgactcaaatccataatagaatcccaaaacaggcaaa 209  Q
    ||||||||||||||| ||||||||| |||||| || || |||||||||||||||| |||||||||||||||||||||| |||||| ||| || |||||||    
T  19704583 tgttgtcaaaatcccaacttaaatcttaaaattcaaggtttttgcgactttcttcaccttcaacgactcaaatccatagtagaattccataataggcaaa 19704484  T
Q  210 at 211  Q
    ||    
T  19704483 at 19704482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 110 - 211
Target Start/End: Complemental strand, 29384444 - 29384343
Alignment:
Q  110 ttgttgtcaaaatcccgacttaaatcctaaaatccaggattttgcgactttcttctccttcaacgactcaaatccataatagaatcccaaaacaggcaaa 209  Q
    ||||||||||||||| |  |||||||||||||||   |||||||||||||||||| |||||||||||||||||||||| || ||||| |||| |||||||    
T  29384444 ttgttgtcaaaatccaggtttaaatcctaaaatcttagattttgcgactttcttcaccttcaacgactcaaatccatagtataatccaaaaataggcaaa 29384345  T
Q  210 at 211  Q
    ||    
T  29384344 at 29384343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 108 - 184
Target Start/End: Complemental strand, 477177 - 477101
Alignment:
Q  108 cattgttgtcaaaatcccgacttaaatcctaaaatccaggattttgcgactttcttctccttcaacgactcaaatcc 184  Q
    ||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| ||||||| |||| ||||||    
T  477177 cattgttgtcaaaatcctgacttaaatcctaaaatccaggattttgtgactttcttcaccttcaatgacttaaatcc 477101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 108 - 211
Target Start/End: Complemental strand, 15761569 - 15761466
Alignment:
Q  108 cattgttgtcaaaatcccgacttaaatcctaaaatccaggattttgcgactttcttctccttcaacgactcaaatccataatagaatcccaaaacaggca 207  Q
    |||||||||||||||| |||||||||||||||| |||||||||||| || ||| ||  ||||||||||||||||| ||||  | |||||||||| |||||    
T  15761569 cattgttgtcaaaatctcgacttaaatcctaaactccaggattttgtgagtttatttaccttcaacgactcaaattcatagcaaaatcccaaaataggca 15761470  T
Q  208 aaat 211  Q
    ||||    
T  15761469 aaat 15761466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 99 - 211
Target Start/End: Complemental strand, 22910341 - 22910229
Alignment:
Q  99 agttgaaagcattgttgtcaaaatcccgacttaaatcctaaaatccaggattttgcgactttcttctccttcaacgactcaaatccataatagaatccca 198  Q
    |||| ||| ||||| ||| || ||||||||||||||||||||||  |||||||| ||||||||||| | |||||||||||||||| ||| |||||||  |    
T  22910341 agtttaaatcattgatgtaaacatcccgacttaaatcctaaaatttaggattttacgactttcttcacattcaacgactcaaatctatagtagaatctta 22910242  T
Q  199 aaacaggcaaaat 211  Q
    ||| |||||||||    
T  22910241 aaataggcaaaat 22910229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 108 - 187
Target Start/End: Complemental strand, 24056698 - 24056619
Alignment:
Q  108 cattgttgtcaaaatcccgacttaaatcctaaaatccaggattttgcgactttcttctccttcaacgactcaaatccata 187  Q
    ||||||| ||||||||  ||||||||||||||||||||||||||||||||||| ||| | || |||||||||||||||||    
T  24056698 cattgttatcaaaatcttgacttaaatcctaaaatccaggattttgcgactttattcacatttaacgactcaaatccata 24056619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 108 - 156
Target Start/End: Original strand, 23136348 - 23136396
Alignment:
Q  108 cattgttgtcaaaatcccgacttaaatcctaaaatccaggattttgcga 156  Q
    |||| |||||||||||||||||||||||||||||| |||||||||||||    
T  23136348 cattattgtcaaaatcccgacttaaatcctaaaattcaggattttgcga 23136396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 148 - 211
Target Start/End: Original strand, 6810861 - 6810924
Alignment:
Q  148 attttgcgactttcttctccttcaacgactcaaatccataatagaatcccaaaacaggcaaaat 211  Q
    ||||||||||||||||| |||||||||||||||||||||| ||||||   |||| |||||||||    
T  6810861 attttgcgactttcttcaccttcaacgactcaaatccatagtagaattttaaaataggcaaaat 6810924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 108 - 211
Target Start/End: Complemental strand, 27836594 - 27836491
Alignment:
Q  108 cattgttgtcaaaatcccgacttaaatcctaaaatccaggattttgcgactttcttctccttcaacgactcaaatccataatagaatcccaaaacaggca 207  Q
    ||||||||||||||| |  ||||| |||||||||| ||||||||||||  ||| ||| |||||||| ||| ||||||||| |||||| | |||| | |||    
T  27836594 cattgttgtcaaaattcaaacttagatcctaaaattcaggattttgcggttttattcaccttcaacaactgaaatccatagtagaattctaaaataagca 27836495  T
Q  208 aaat 211  Q
    ||||    
T  27836494 aaat 27836491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 256 - 292
Target Start/End: Original strand, 26879778 - 26879814
Alignment:
Q  256 aatccatcaattttgattgcgattttacgatttttga 292  Q
    |||||||||||||||||||||||||||||||||||||    
T  26879778 aatccatcaattttgattgcgattttacgatttttga 26879814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 210 - 281
Target Start/End: Original strand, 6810979 - 6811048
Alignment:
Q  210 atatatcatttataacatatatttagtattannnnnnncttcgtaaaatccatcaattttgattgcgatttt 281  Q
    |||||||||||||||||||||||||||||||        || |||||||||||| |||||||||||||||||    
T  6810979 atatatcatttataacatatatttagtattatttttt--ttggtaaaatccatcgattttgattgcgatttt 6811048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 254 - 290
Target Start/End: Complemental strand, 3094284 - 3094248
Alignment:
Q  254 aaaatccatcaattttgattgcgattttacgattttt 290  Q
    |||||||||| ||||||||||||||||||||||||||    
T  3094284 aaaatccatcgattttgattgcgattttacgattttt 3094248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 108 - 194
Target Start/End: Complemental strand, 7489414 - 7489331
Alignment:
Q  108 cattgttgtcaaaatcccgacttaaatcctaaaatccaggattttgcgactttcttctccttcaacgactcaaatccataatagaat 194  Q
    |||| ||||||||||||| | ||||||| |||||| ||| ||||||   |||||||| |||||||||||| |||||| || ||||||    
T  7489414 cattattgtcaaaatccccaattaaatcgtaaaatacagaattttg---ctttcttcaccttcaacgactaaaatccgtagtagaat 7489331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 110 - 154
Target Start/End: Complemental strand, 9036801 - 9036757
Alignment:
Q  110 ttgttgtcaaaatcccgacttaaatcctaaaatccaggattttgc 154  Q
    |||||||||||| || ||||||||||||||||| |||||||||||    
T  9036801 ttgttgtcaaaaacctgacttaaatcctaaaattcaggattttgc 9036757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 252 - 288
Target Start/End: Complemental strand, 29384242 - 29384206
Alignment:
Q  252 gtaaaatccatcaattttgattgcgattttacgattt 288  Q
    |||||||||||| ||||||||||||||||||||||||    
T  29384242 gtaaaatccatcgattttgattgcgattttacgattt 29384206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 105 - 160
Target Start/End: Complemental strand, 17788439 - 17788384
Alignment:
Q  105 aagcattgttgtcaaaatcccgacttaaatcctaaaatccaggattttgcgacttt 160  Q
    ||||||||||||||||||| | ||||||||  ||||||| ||||||||| ||||||    
T  17788439 aagcattgttgtcaaaatcgcaacttaaattttaaaatctaggattttgagacttt 17788384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 210 - 240
Target Start/End: Complemental strand, 7489254 - 7489224
Alignment:
Q  210 atatatcatttataacatatatttagtatta 240  Q
    |||||||||||||||||||||||||||||||    
T  7489254 atatatcatttataacatatatttagtatta 7489224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 252 - 286
Target Start/End: Complemental strand, 26574982 - 26574948
Alignment:
Q  252 gtaaaatccatcaattttgattgcgattttacgat 286  Q
    ||||||||| |||||||||||||||||||||||||    
T  26574982 gtaaaatccttcaattttgattgcgattttacgat 26574948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 108 - 150
Target Start/End: Complemental strand, 27672345 - 27672303
Alignment:
Q  108 cattgttgtcaaaatcccgacttaaatcctaaaatccaggatt 150  Q
    |||||||| |||||||||||||||||| |||||||||| ||||    
T  27672345 cattgttgccaaaatcccgacttaaattctaaaatccaagatt 27672303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 81
Target Start/End: Complemental strand, 2997785 - 2997740
Alignment:
Q  36 catgtaaacatattcttgcaaatcaccatgaagaaaaacattgttt 81  Q
    |||||||||||  ||||||||||||||||| |||||| ||||||||    
T  2997785 catgtaaacattctcttgcaaatcaccatgtagaaaagcattgttt 2997740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 211
Target Start/End: Original strand, 15231733 - 15231826
Alignment:
Q  118 aaaatcccgacttaaatcctaaaatccaggattttgcgactttcttctccttcaacgactcaaatccataatagaatcccaaaacaggcaaaat 211  Q
    |||||| ||| |||||||||||| |  | ||||||||||  |||||| |||||||||||| |||| |||| || ||||  |||| |||||||||    
T  15231733 aaaatctcgatttaaatcctaaactttaagattttgcgatgttcttcaccttcaacgactgaaattcatactaaaatcttaaaataggcaaaat 15231826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 211
Target Start/End: Original strand, 23142224 - 23142277
Alignment:
Q  158 tttcttctccttcaacgactcaaatccataatagaatcccaaaacaggcaaaat 211  Q
    |||||||  ||||||||||| ||||||||| |||||||| |||| |||||||||    
T  23142224 tttcttcaacttcaacgactgaaatccatagtagaatcctaaaataggcaaaat 23142277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 287
Target Start/End: Original strand, 45403127 - 45403160
Alignment:
Q  254 aaaatccatcaattttgattgcgattttacgatt 287  Q
    |||||||||| |||||||||||||||||||||||    
T  45403127 aaaatccatcgattttgattgcgattttacgatt 45403160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 108 - 156
Target Start/End: Complemental strand, 9212348 - 9212300
Alignment:
Q  108 cattgttgtcaaaatcccgacttaaatcctaaaatccaggattttgcga 156  Q
    ||||||||||||||| |  ||||||||||||||||| ||| ||||||||    
T  9212348 cattgttgtcaaaattctcacttaaatcctaaaatctaggtttttgcga 9212300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 80; Significance: 2e-37; HSPs: 43)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 108 - 211
Target Start/End: Complemental strand, 30912542 - 30912439
Alignment:
Q  108 cattgttgtcaaaatcccgacttaaatcctaaaatccaggattttgcgactttcttctccttcaacgactcaaatccataatagaatcccaaaacaggca 207  Q
    |||||||||||||||||| ||||||||||||||||  |||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| |||||    
T  30912542 cattgttgtcaaaatcccaacttaaatcctaaaatttaggattttgcgactttcttcaccttcaacgactcaaatccataatagaatcacaaaataggca 30912443  T
Q  208 aaat 211  Q
    ||||    
T  30912442 aaat 30912439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 109 - 211
Target Start/End: Original strand, 17250057 - 17250159
Alignment:
Q  109 attgttgtcaaaatcccgacttaaatcctaaaatccaggattttgcgactttcttctccttcaacgactcaaatccataatagaatcccaaaacaggcaa 208  Q
    |||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| ||||||||| ||||||||||||| ||||||    
T  17250057 attgttgttaaaatcccgacttaaatcctaaaatccaggattttgcaactttcttcaccttcaacgacttaaatccatactagaatcccaaaataggcaa 17250156  T
Q  209 aat 211  Q
    |||    
T  17250157 aat 17250159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 108 - 211
Target Start/End: Complemental strand, 6943590 - 6943487
Alignment:
Q  108 cattgttgtcaaaatcccgacttaaatcctaaaatccaggattttgcgactttcttctccttcaacgactcaaatccataatagaatcccaaaacaggca 207  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| ||| ||||||| ||||| || ||    
T  6943590 cattgttgtcaaaatcccgacttaaatcctaaaattcaggattttgcgactttcttcaccttcaacgactcaaatcgatagtagaatctcaaaatagaca 6943491  T
Q  208 aaat 211  Q
    ||||    
T  6943490 aaat 6943487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 104 - 211
Target Start/End: Complemental strand, 27233411 - 27233304
Alignment:
Q  104 aaagcattgttgtcaaaatcccgacttaaatcctaaaatccaggattttgcgactttcttctccttcaacgactcaaatccataatagaatcccaaaaca 203  Q
    ||||||||||||||||| | |||||||||||||||||||||||||||||| |||||||||| |||||||||||| ||||||||| ||||||||||||| |    
T  27233411 aaagcattgttgtcaaactaccgacttaaatcctaaaatccaggattttgtgactttcttcaccttcaacgacttaaatccatagtagaatcccaaaata 27233312  T
Q  204 ggcaaaat 211  Q
    | ||||||    
T  27233311 gacaaaat 27233304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 109 - 211
Target Start/End: Complemental strand, 26053425 - 26053323
Alignment:
Q  109 attgttgtcaaaatcccgacttaaatcctaaaatccaggattttgcgactttcttctccttcaacgactcaaatccataatagaatcccaaaacaggcaa 208  Q
    ||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| ||||||| ||||||||| |||||||||||||||||| | ||||    
T  26053425 attgttgtcaaaatcccgacttaaatcttaaaatctaggattttgcgactttcttcaccttcaatgactcaaattcataatagaatcccaaaataagcaa 26053326  T
Q  209 aat 211  Q
    |||    
T  26053325 aat 26053323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 109 - 211
Target Start/End: Complemental strand, 26073478 - 26073376
Alignment:
Q  109 attgttgtcaaaatcccgacttaaatcctaaaatccaggattttgcgactttcttctccttcaacgactcaaatccataatagaatcccaaaacaggcaa 208  Q
    ||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| ||||||| ||||||||| |||||||||||||||||| | ||||    
T  26073478 attgttgtcaaaatcccgacttaaatcttaaaatctaggattttgcgactttcttcaccttcaatgactcaaattcataatagaatcccaaaataagcaa 26073379  T
Q  209 aat 211  Q
    |||    
T  26073378 aat 26073376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 108 - 195
Target Start/End: Complemental strand, 17543870 - 17543783
Alignment:
Q  108 cattgttgtcaaaatcccgacttaaatcctaaaatccaggattttgcgactttcttctccttcaacgactcaaatccataatagaatc 195  Q
    |||||||||||||||| |||||||||||||||||| ||||||||||||||||| ||| | |||||||||||||||||||| |||||||    
T  17543870 cattgttgtcaaaatctcgacttaaatcctaaaattcaggattttgcgacttttttcactttcaacgactcaaatccatagtagaatc 17543783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 108 - 211
Target Start/End: Complemental strand, 18491167 - 18491064
Alignment:
Q  108 cattgttgtcaaaatcccgacttaaatcctaaaatccaggattttgcgactttcttctccttcaacgactcaaatccataatagaatcccaaaacaggca 207  Q
    ||||| ||||||||||||||||||||||||||||||||| |||||||  |||| ||| ||||||||||||||||||||||  ||||||||||||| | ||    
T  18491167 cattgctgtcaaaatcccgacttaaatcctaaaatccagaattttgcatctttattcaccttcaacgactcaaatccatagcagaatcccaaaactgaca 18491068  T
Q  208 aaat 211  Q
    ||||    
T  18491067 aaat 18491064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 109 - 195
Target Start/End: Complemental strand, 15528239 - 15528153
Alignment:
Q  109 attgttgtcaaaatcccgacttaaatcctaaaatccaggattttgcgactttcttctccttcaacgactcaaatccataatagaatc 195  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| ||||||| |||| |||| |||||||    
T  15528239 attgttgtcaaaatcccgacttaaatcctaaaattcaggattttgcgactttcttcacctttaacgacttaaattcatagtagaatc 15528153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 109 - 196
Target Start/End: Complemental strand, 7918510 - 7918423
Alignment:
Q  109 attgttgtcaaaatcccgacttaaatcctaaaatccaggattttgcgactttcttctccttcaacgactcaaatccataatagaatcc 196  Q
    |||||||||||||||||||||||||| ||||||| ||||||||||||||||| ||| |||||||||||| ||||||||| || |||||    
T  7918510 attgttgtcaaaatcccgacttaaattctaaaattcaggattttgcgacttttttcaccttcaacgacttaaatccatagtaaaatcc 7918423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 108 - 211
Target Start/End: Complemental strand, 11327701 - 11327598
Alignment:
Q  108 cattgttgtcaaaatcccgacttaaatcctaaaatccaggattttgcgactttcttctccttcaacgactcaaatccataatagaatcccaaaacaggca 207  Q
    |||||||||||||||||||||||||| ||||||||||| | |||||||  |||||||  |||||| |||| ||||||||| ||||||||||||| |||||    
T  11327701 cattgttgtcaaaatcccgacttaaaacctaaaatccaaggttttgcggttttcttcatcttcaaggacttaaatccatagtagaatcccaaaataggca 11327602  T
Q  208 aaat 211  Q
    ||||    
T  11327601 aaat 11327598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 108 - 187
Target Start/End: Original strand, 23897810 - 23897889
Alignment:
Q  108 cattgttgtcaaaatcccgacttaaatcctaaaatccaggattttgcgactttcttctccttcaacgactcaaatccata 187  Q
    ||||||||  || |||||||||||||||||||||| ||||||||||||||||||||| | ||||||||||||||||||||    
T  23897810 cattgttgataagatcccgacttaaatcctaaaatgcaggattttgcgactttcttcacgttcaacgactcaaatccata 23897889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 111 - 186
Target Start/End: Complemental strand, 3574059 - 3573984
Alignment:
Q  111 tgttgtcaaaatcccgacttaaatcctaaaatccaggattttgcgactttcttctccttcaacgactcaaatccat 186  Q
    |||| ||||||| ||||||||||| ||||||||||| |||| |||||||||||| |||||||||||||||||||||    
T  3574059 tgttttcaaaattccgacttaaattctaaaatccagaatttcgcgactttcttcaccttcaacgactcaaatccat 3573984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 108 - 183
Target Start/End: Complemental strand, 5422878 - 5422803
Alignment:
Q  108 cattgttgtcaaaatcccgacttaaatcctaaaatccaggattttgcgactttcttctccttcaacgactcaaatc 183  Q
    ||||||||||||||||||||||||||| ||||||| || |||||||| ||||| ||| ||||||||||||||||||    
T  5422878 cattgttgtcaaaatcccgacttaaatactaaaattcatgattttgcaactttattcaccttcaacgactcaaatc 5422803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 108 - 211
Target Start/End: Complemental strand, 10509153 - 10509050
Alignment:
Q  108 cattgttgtcaaaatcccgacttaaatcctaaaatccaggattttgcgactttcttctccttcaacgactcaaatccataatagaatcccaaaacaggca 207  Q
    |||| |||||||||||| ||||||||||||||||| ||| | |||| |||||||||| | ||||| |||||||||  ||| ||||||||||||| |||||    
T  10509153 cattattgtcaaaatccagacttaaatcctaaaattcagaaatttgtgactttcttcacattcaatgactcaaatttatagtagaatcccaaaataggca 10509054  T
Q  208 aaat 211  Q
    ||||    
T  10509053 aaat 10509050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 108 - 211
Target Start/End: Original strand, 19748332 - 19748435
Alignment:
Q  108 cattgttgtcaaaatcccgacttaaatcctaaaatccaggattttgcgactttcttctccttcaacgactcaaatccataatagaatcccaaaacaggca 207  Q
    ||||||| |||||||||||||||||||| || |||||||||||||| || ||||||| |||| || ||||||||||| || |||||||  |||| |||||    
T  19748332 cattgttttcaaaatcccgacttaaatcttacaatccaggattttgagattttcttcacctttaatgactcaaatccgtagtagaatcttaaaataggca 19748431  T
Q  208 aaat 211  Q
    ||||    
T  19748432 aaat 19748435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 107 - 164
Target Start/End: Original strand, 7223517 - 7223574
Alignment:
Q  107 gcattgttgtcaaaatcccgacttaaatcctaaaatccaggattttgcgactttcttc 164  Q
    ||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||    
T  7223517 gcattgttgtcaaaatcccgacttaaatcctaaaatttaggattttgcgactttcttc 7223574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 117 - 211
Target Start/End: Complemental strand, 22499006 - 22498912
Alignment:
Q  117 caaaatcccgacttaaatcctaaaatccaggattttgcgactttcttctccttcaacgactcaaatccataatagaatcccaaaacaggcaaaat 211  Q
    ||||||||| ||| |||||||||| ||||  ||||||||||||||||| |||| ||||||||||||||||| || |||| ||||| || ||||||    
T  22499006 caaaatcccaactaaaatcctaaattccacaattttgcgactttcttcaccttgaacgactcaaatccatagtacaatctcaaaatagacaaaat 22498912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 108 - 211
Target Start/End: Original strand, 17103201 - 17103297
Alignment:
Q  108 cattgttgtcaaaatcccgacttaaatcctaaaatccaggattttgcgactttcttctccttcaacgactcaaatccataatagaatcccaaaacaggca 207  Q
    |||||||||||||||||||||||||||| |||||| |||||||||||||       | | ||||||||||||||| |||| ||||||||||||| || ||    
T  17103201 cattgttgtcaaaatcccgacttaaatcttaaaattcaggattttgcga-------cactttcaacgactcaaatgcatagtagaatcccaaaatagaca 17103293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 129 - 212
Target Start/End: Complemental strand, 4842026 - 4841945
Alignment:
Q  129 ttaaatcctaaaatccaggattttgcgactttcttctccttcaacgactcaaatccataatagaatcccaaaacaggcaaaata 212  Q
    ||||||||||||||   ||||||||||||||| ||| ||||||||||||||||||| ||  ||||||||| || ||||||||||    
T  4842026 ttaaatcctaaaatt--ggattttgcgactttattcaccttcaacgactcaaatccgtagcagaatcccataataggcaaaata 4841945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 112 - 183
Target Start/End: Complemental strand, 2912373 - 2912302
Alignment:
Q  112 gttgtcaaaatcccgacttaaatcctaaaatccaggattttgcgactttcttctccttcaacgactcaaatc 183  Q
    |||||||||||||||||||||||| ||||||  |||||||||| ||||||| |  ||||||||| |||||||    
T  2912373 gttgtcaaaatcccgacttaaatcttaaaatttaggattttgcaactttctccatcttcaacgattcaaatc 2912302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 108 - 186
Target Start/End: Complemental strand, 10958317 - 10958239
Alignment:
Q  108 cattgttgtcaaaatcccgacttaaatcctaaaatccaggattttgcgactttcttctccttcaacgactcaaatccat 186  Q
    |||||||||||||||| |||||||||||  ||||| ||||||||||||||||   || ||||||| || ||||||||||    
T  10958317 cattgttgtcaaaatcgcgacttaaatctcaaaattcaggattttgcgacttgactcaccttcaaggattcaaatccat 10958239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 108 - 211
Target Start/End: Original strand, 21354747 - 21354842
Alignment:
Q  108 cattgttgtcaaaatcccgacttaaatcctaaaatccaggattttgcgactttcttctccttcaacgactcaaatccataatagaatcccaaaacaggca 207  Q
    |||||||||||||||||| |||||||||||||||||| |        |||||||||  |||||||||||| ||||||||  ||||||||||||| || ||    
T  21354747 cattgttgtcaaaatcccaacttaaatcctaaaatcctg--------gactttctttaccttcaacgacttaaatccatggtagaatcccaaaatagaca 21354838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 112 - 201
Target Start/End: Complemental strand, 33583855 - 33583766
Alignment:
Q  112 gttgtcaaaatcccgacttaaatcctaaaatccaggattttgcgactttcttctccttcaacgactcaaatccataatagaatcccaaaa 201  Q
    |||||||||||| |||||||| ||| |||||||||||||||  ||||||  |   |||||||||||||||||||||  |||| |||||||    
T  33583855 gttgtcaaaatcgcgacttaagtcccaaaatccaggatttttagactttaattagcttcaacgactcaaatccatagcagaaacccaaaa 33583766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 118 - 202
Target Start/End: Complemental strand, 8285843 - 8285759
Alignment:
Q  118 aaaatcccgacttaaatcctaaaatccaggattttgcgactttcttctccttcaacgactcaaatccataatagaatcccaaaac 202  Q
    |||||| |||||||| ||||||||||||||||||||||||||  |    ||||||||||||||||||| |  | |||||||||||    
T  8285843 aaaatcgcgacttaagtcctaaaatccaggattttgcgacttgatctagcttcaacgactcaaatccacagcaaaatcccaaaac 8285759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 136 - 202
Target Start/End: Complemental strand, 18491063 - 18490997
Alignment:
Q  136 ctaaaatccaggattttgcgactttcttctccttcaacgactcaaatccataatagaatcccaaaac 202  Q
    ||||||||||| ||||||| ||||| ||| ||||||| ||||||||||||||  ||||||| |||||    
T  18491063 ctaaaatccagcattttgcaactttattcaccttcaatgactcaaatccatagcagaatcctaaaac 18490997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 210 - 288
Target Start/End: Complemental strand, 7918319 - 7918244
Alignment:
Q  210 atatatcatttataacatatatttagtattannnnnnncttcgtaaaatccatcaattttgattgcgattttacgattt 288  Q
    ||||||||||||||||||| |||||||||||        || |||||||||||| ||||||||||||||||||| ||||    
T  7918319 atatatcatttataacataaatttagtattattttt---ttggtaaaatccatcgattttgattgcgattttacaattt 7918244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 210 - 288
Target Start/End: Original strand, 19748491 - 19748568
Alignment:
Q  210 atatatcatttataacatatatttagtattannnnnnncttcgtaaaatccatcaattttgattgcgattttacgattt 288  Q
    ||||||||||||||| |||||||||||||||       ||  |||||||||||| ||||||||||||||||||| ||||    
T  19748491 atatatcatttataaaatatatttagtattattattttctg-gtaaaatccatcgattttgattgcgattttacaattt 19748568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 116 - 160
Target Start/End: Complemental strand, 8545087 - 8545043
Alignment:
Q  116 tcaaaatcccgacttaaatcctaaaatccaggattttgcgacttt 160  Q
    |||||||||||| ||||||||||||||  ||||||||||||||||    
T  8545087 tcaaaatcccgatttaaatcctaaaatttaggattttgcgacttt 8545043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 215 - 288
Target Start/End: Complemental strand, 10508984 - 10508911
Alignment:
Q  215 tcatttataacatatatttagtattannnnnnncttcgtaaaatccatcaattttgattgcgattttacgattt 288  Q
    |||||||||||||||||||| |||||        ||  ||||||||||||||||||||||||||||||| ||||    
T  10508984 tcatttataacatatatttattattattattattttgataaaatccatcaattttgattgcgattttacaattt 10508911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 254 - 288
Target Start/End: Original strand, 7223610 - 7223644
Alignment:
Q  254 aaaatccatcaattttgattgcgattttacgattt 288  Q
    |||||||||| ||||||||||||||||||||||||    
T  7223610 aaaatccatcgattttgattgcgattttacgattt 7223644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 285
Target Start/End: Complemental strand, 18490565 - 18490536
Alignment:
Q  256 aatccatcaattttgattgcgattttacga 285  Q
    ||||||||||||||||||||||||||||||    
T  18490565 aatccatcaattttgattgcgattttacga 18490536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 201
Target Start/End: Complemental strand, 18490987 - 18490922
Alignment:
Q  136 ctaaaatccaggattttgcgactttcttctccttcaacgactcaaatccataatagaatcccaaaa 201  Q
    ||||||||||| ||||||| ||||| ||| |||||||||||| ||| |||||  | ||||||||||    
T  18490987 ctaaaatccagcattttgcaactttattcaccttcaacgactgaaacccatagcataatcccaaaa 18490922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 252 - 289
Target Start/End: Complemental strand, 20432458 - 20432421
Alignment:
Q  252 gtaaaatccatcaattttgattgcgattttacgatttt 289  Q
    ||||||| | ||||||||||||||||||||||||||||    
T  20432458 gtaaaattcttcaattttgattgcgattttacgatttt 20432421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 288
Target Start/End: Original strand, 23897910 - 23897943
Alignment:
Q  255 aaatccatcaattttgattgcgattttacgattt 288  Q
    ||||||||| ||||||||||||||||||||||||    
T  23897910 aaatccatcgattttgattgcgattttacgattt 23897943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 210 - 288
Target Start/End: Complemental strand, 26053267 - 26053190
Alignment:
Q  210 atatatcatttataacatatatttagtattannnnnnncttcgtaaaatccatcaattttgattgcgattttacgattt 288  Q
    ||||| ||||||||||||||| |||||||||        || |||||||||||| ||||||||||||||||||| ||||    
T  26053267 atataccatttataacatatagttagtattattatttt-ttggtaaaatccatcgattttgattgcgattttacaattt 26053190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 210 - 288
Target Start/End: Complemental strand, 26073320 - 26073243
Alignment:
Q  210 atatatcatttataacatatatttagtattannnnnnncttcgtaaaatccatcaattttgattgcgattttacgattt 288  Q
    ||||| ||||||||||||||| |||||||||        || |||||||||||| ||||||||||||||||||| ||||    
T  26073320 atataccatttataacatatagttagtattattatttt-ttggtaaaatccatcgattttgattgcgattttacaattt 26073243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 201
Target Start/End: Original strand, 27890137 - 27890225
Alignment:
Q  112 gttgtcaaaatcccgacttaaatcctaaaatccaggattttgcgactttcttctccttcaacgactcaaatccataatagaatcccaaaa 201  Q
    ||||||||||||  ||||||| ||| ||||| |||| |||||||||||| |    ||| |||||||||||||||||  ||||||||||||    
T  27890137 gttgtcaaaatct-gacttaagtcccaaaattcaggtttttgcgactttgtgtagctttaacgactcaaatccatatcagaatcccaaaa 27890225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 252 - 288
Target Start/End: Complemental strand, 4841759 - 4841723
Alignment:
Q  252 gtaaaatccatcaattttgattgcgattttacgattt 288  Q
    ||||||| |||| ||||||||||||||||||||||||    
T  4841759 gtaaaatacatcgattttgattgcgattttacgattt 4841723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #40
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 252 - 288
Target Start/End: Original strand, 17103394 - 17103430
Alignment:
Q  252 gtaaaatccatcaattttgattgcgattttacgattt 288  Q
    |||||||||||| ||||||||||||||||||| ||||    
T  17103394 gtaaaatccatcgattttgattgcgattttacaattt 17103430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #41
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 252 - 288
Target Start/End: Complemental strand, 17543660 - 17543624
Alignment:
Q  252 gtaaaatccatcaattttgattgcgattttacgattt 288  Q
    |||||||||||| ||||||||||||||||||| ||||    
T  17543660 gtaaaatccatcgattttgattgcgattttacaattt 17543624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #42
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 252 - 288
Target Start/End: Complemental strand, 22498370 - 22498334
Alignment:
Q  252 gtaaaatccatcaattttgattgcgattttacgattt 288  Q
    |||||||||||| ||||||||||||||||||| ||||    
T  22498370 gtaaaatccatcgattttgattgcgattttacaattt 22498334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #43
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 256 - 292
Target Start/End: Complemental strand, 33593089 - 33593053
Alignment:
Q  256 aatccatcaattttgattgcgattttacgatttttga 292  Q
    |||||||| |||||||||||||||||| |||||||||    
T  33593089 aatccatcgattttgattgcgattttatgatttttga 33593053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 80; Significance: 2e-37; HSPs: 37)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 108 - 211
Target Start/End: Original strand, 29067283 - 29067386
Alignment:
Q  108 cattgttgtcaaaatcccgacttaaatcctaaaatccaggattttgcgactttcttctccttcaacgactcaaatccataatagaatcccaaaacaggca 207  Q
    ||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||| || ||    
T  29067283 cattgttgtcaaaatcccgacttaaattctaaaattcaggattttgcgactttcttcaccttcaacgactcaaatccatagtagaatcccaaaatagaca 29067382  T
Q  208 aaat 211  Q
    ||||    
T  29067383 aaat 29067386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 106 - 211
Target Start/End: Complemental strand, 15806637 - 15806533
Alignment:
Q  106 agcattgttgtcaaaatcccgacttaaatcctaaaatccaggattttgcgactttcttctccttcaacgactcaaatccataatagaatcccaaaacagg 205  Q
    ||||||||||||||||||| ||||||||||||| ||||||| ||||||||||||| ||| ||||||| ||||||||||||||  ||||||||||||||||    
T  15806637 agcattgttgtcaaaatcc-gacttaaatcctacaatccagaattttgcgactttattcaccttcaatgactcaaatccatagcagaatcccaaaacagg 15806539  T
Q  206 caaaat 211  Q
    ||||||    
T  15806538 caaaat 15806533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 108 - 211
Target Start/End: Original strand, 28745769 - 28745872
Alignment:
Q  108 cattgttgtcaaaatcccgacttaaatcctaaaatccaggattttgcgactttcttctccttcaacgactcaaatccataatagaatcccaaaacaggca 207  Q
    |||||||||||||||||||| ||||||||||||||  |||||||||||||||||||| ||||||||||||||||| |||| ||||||| ||||| || ||    
T  28745769 cattgttgtcaaaatcccgatttaaatcctaaaatttaggattttgcgactttcttcaccttcaacgactcaaattcatagtagaatctcaaaatagaca 28745868  T
Q  208 aaat 211  Q
    ||||    
T  28745869 aaat 28745872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 104 - 211
Target Start/End: Original strand, 27676351 - 27676458
Alignment:
Q  104 aaagcattgttgtcaaaatcccgacttaaatcctaaaatccaggattttgcgactttcttctccttcaacgactcaaatccataatagaatcccaaaaca 203  Q
    ||||||||||||||||||||| |||||||||| |||||| ||||||||||||||||| ||| ||||| | ||||||||||||||  |||||||||||| |    
T  27676351 aaagcattgttgtcaaaatcctgacttaaatcgtaaaatgcaggattttgcgactttattcaccttctatgactcaaatccatagcagaatcccaaaata 27676450  T
Q  204 ggcaaaat 211  Q
    || |||||    
T  27676451 ggtaaaat 27676458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 109 - 211
Target Start/End: Original strand, 20756039 - 20756141
Alignment:
Q  109 attgttgtcaaaatcccgacttaaatcctaaaatccaggattttgcgactttcttctccttcaacgactcaaatccataatagaatcccaaaacaggcaa 208  Q
    ||||||||||||||||||||||||||  |||||| ||||||||||||| ||||||| ||||||| |||||||||||||| |||||||  |||| ||||||    
T  20756039 attgttgtcaaaatcccgacttaaattataaaattcaggattttgcgattttcttcaccttcaatgactcaaatccatagtagaatcttaaaataggcaa 20756138  T
Q  209 aat 211  Q
    |||    
T  20756139 aat 20756141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 110 - 211
Target Start/End: Complemental strand, 3449419 - 3449319
Alignment:
Q  110 ttgttgtcaaaatcccgacttaaatcctaaaatccaggattttgcgactttcttctccttcaacgactcaaatccataatagaatcccaaaacaggcaaa 209  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||  ||||||||| || ||||| ||| |||||||| |||| |||||||    
T  3449419 ttgttgtcaaaatcccgacttaaatcctaaaattcaggattttgcgactttctttaccttcaacg-ctaaaatctatagtagaatcctaaaataggcaaa 3449321  T
Q  210 at 211  Q
    ||    
T  3449320 at 3449319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 109 - 201
Target Start/End: Complemental strand, 24649818 - 24649726
Alignment:
Q  109 attgttgtcaaaatcccgacttaaatcctaaaatccaggattttgcgactttcttctccttcaacgactcaaatccataatagaatcccaaaa 201  Q
    ||||||||||||||||||||||||||| ||||||| ||||||||  ||||| |||| |||||||||||||||||||||| |||||| ||||||    
T  24649818 attgttgtcaaaatcccgacttaaatcgtaaaatctaggattttttgacttgcttcaccttcaacgactcaaatccatagtagaattccaaaa 24649726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 109 - 211
Target Start/End: Complemental strand, 30727820 - 30727718
Alignment:
Q  109 attgttgtcaaaatcccgacttaaatcctaaaatccaggattttgcgactttcttctccttcaacgactcaaatccataatagaatcccaaaacaggcaa 208  Q
    |||||| ||||||||| |||||||||| |||||||| | ||||| ||||||||||| |||||||||||||||||| ||| ||||||||||||| || |||    
T  30727820 attgttatcaaaatcctgacttaaatcttaaaatcctgaattttacgactttcttcaccttcaacgactcaaatctatagtagaatcccaaaatagacaa 30727721  T
Q  209 aat 211  Q
    |||    
T  30727720 aat 30727718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 118 - 211
Target Start/End: Original strand, 21963438 - 21963531
Alignment:
Q  118 aaaatcccgacttaaatcctaaaatccaggattttgcgactttcttctccttcaacgactcaaatccataatagaatcccaaaacaggcaaaat 211  Q
    ||||||||||||||||||||||||| || |||||| ||||||||||| |||| ||||||||||||||||| || ||||| |||| | |||||||    
T  21963438 aaaatcccgacttaaatcctaaaattcaagattttacgactttcttcaccttgaacgactcaaatccatagtaaaatcctaaaatatgcaaaat 21963531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 118 - 211
Target Start/End: Original strand, 21985874 - 21985967
Alignment:
Q  118 aaaatcccgacttaaatcctaaaatccaggattttgcgactttcttctccttcaacgactcaaatccataatagaatcccaaaacaggcaaaat 211  Q
    ||||||||||||||||||||||||| || |||||| ||||||||||| |||| ||||||||||||||||| || ||||| |||| | |||||||    
T  21985874 aaaatcccgacttaaatcctaaaattcaagattttacgactttcttcaccttgaacgactcaaatccatagtaaaatcctaaaatatgcaaaat 21985967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 112 - 201
Target Start/End: Original strand, 39427905 - 39427994
Alignment:
Q  112 gttgtcaaaatcccgacttaaatcctaaaatccaggattttgcgactttcttctccttcaacgactcaaatccataatagaatcccaaaa 201  Q
    |||||||||||||||| ||||||  |||||||| ||||||||| ||||||||| | |||||||||||||||| ||| |||||||||||||    
T  39427905 gttgtcaaaatcccgatttaaattttaaaatcctggattttgcaactttcttcacgttcaacgactcaaatcgatagtagaatcccaaaa 39427994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 108 - 211
Target Start/End: Complemental strand, 24620333 - 24620227
Alignment:
Q  108 cattgttgtcaaaatcccgacttaaatcctaaaatccaggattttgcgac---tttcttctccttcaacgactcaaatccataatagaatcccaaaacag 204  Q
    ||||||||||||||| |||||||||||||||||||  | |||||||||||   ||||||| ||||||||||||||||| || | ||||||| ||||| ||    
T  24620333 cattgttgtcaaaattccgacttaaatcctaaaatttaagattttgcgacgactttcttcaccttcaacgactcaaattcacagtagaatctcaaaatag 24620234  T
Q  205 gcaaaat 211  Q
    |||||||    
T  24620233 gcaaaat 24620227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 108 - 201
Target Start/End: Complemental strand, 8156261 - 8156168
Alignment:
Q  108 cattgttgtcaaaatcccgacttaaatcctaaaatccaggattttgcgactttcttctccttcaacgactcaaatccataatagaatcccaaaa 201  Q
    |||||||||||||||||| |||||||| ||||||| ||| ||||| ||| ||| ||| ||||||| |||||||||||||| || ||||||||||    
T  8156261 cattgttgtcaaaatcccaacttaaattctaaaattcagaattttacgatttttttcaccttcaatgactcaaatccatagtataatcccaaaa 8156168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 119 - 211
Target Start/End: Complemental strand, 10873065 - 10872973
Alignment:
Q  119 aaatcccgacttaaatcctaaaatccaggattttgcgactttcttctccttcaacgactcaaatccataatagaatcccaaaacaggcaaaat 211  Q
    ||||||||| | ||||||||||||||||||||||| ||  || ||| ||||||||||||||||||||||  |||||| ||||| |||||||||    
T  10873065 aaatcccgattgaaatcctaaaatccaggattttgtgatattattcaccttcaacgactcaaatccatagcagaatctcaaaataggcaaaat 10872973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 108 - 175
Target Start/End: Complemental strand, 25870506 - 25870439
Alignment:
Q  108 cattgttgtcaaaatcccgacttaaatcctaaaatccaggattttgcgactttcttctccttcaacga 175  Q
    |||||||||||||||| ||||||||||||||||||||| ||||||| ||||||||||  |||||||||    
T  25870506 cattgttgtcaaaatctcgacttaaatcctaaaatccaagattttgtgactttcttcatcttcaacga 25870439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 109 - 211
Target Start/End: Original strand, 22137278 - 22137380
Alignment:
Q  109 attgttgtcaaaatcccgacttaaatcctaaaatccaggattttgcgactttcttctccttcaacgactcaaatccataatagaatcccaaaacaggcaa 208  Q
    |||||| | ||||||| ||||||||||||||||| || ||| || ||||||||||| |||| |||| |||||||||||| || |||||||||| | ||||    
T  22137278 attgtttttaaaatcctgacttaaatcctaaaattcaagatgttacgactttcttcaccttgaacgcctcaaatccatagtaaaatcccaaaatatgcaa 22137377  T
Q  209 aat 211  Q
    |||    
T  22137378 aat 22137380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 114 - 211
Target Start/End: Original strand, 17064326 - 17064423
Alignment:
Q  114 tgtcaaaatcccgacttaaatcctaaaatccaggattttgcgactttcttctccttcaacgactcaaatccataatagaatcccaaaacaggcaaaat 211  Q
    |||||||||||||||||||||| |||||| ||||||||||||| | | ||| ||||||||||||| ||| |||| |||||| | |||| || ||||||    
T  17064326 tgtcaaaatcccgacttaaatcttaaaattcaggattttgcgattgtgttcaccttcaacgactccaattcatagtagaattctaaaatagacaaaat 17064423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 108 - 201
Target Start/End: Original strand, 17796376 - 17796469
Alignment:
Q  108 cattgttgtcaaaatcccgacttaaatcctaaaatccaggattttgcgactttcttctccttcaacgactcaaatccataatagaatcccaaaa 201  Q
    ||||||||||||||| |||||||||||| ||||||| |||||||| ||||||| |||  ||||||| |||||||| ||||  ||||||| ||||    
T  17796376 cattgttgtcaaaattccgacttaaatcataaaatctaggattttacgactttattcatcttcaacaactcaaattcatagcagaatcctaaaa 17796469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 108 - 201
Target Start/End: Original strand, 19104816 - 19104909
Alignment:
Q  108 cattgttgtcaaaatcccgacttaaatcctaaaatccaggattttgcgactttcttctccttcaacgactcaaatccataatagaatcccaaaa 201  Q
    ||||||||||||||| |||||||||||| ||||||| |||||||| ||||||| |||  ||||||| |||||||| ||||  ||||||| ||||    
T  19104816 cattgttgtcaaaattccgacttaaatcataaaatctaggattttacgactttattcatcttcaacaactcaaattcatagcagaatcctaaaa 19104909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 110 - 187
Target Start/End: Original strand, 28135723 - 28135800
Alignment:
Q  110 ttgttgtcaaaatcccgacttaaatcctaaaatccaggattttgcgactttcttctccttcaacgactcaaatccata 187  Q
    ||||||||||||| |||| ||||||| |||||| ||||||||||||||||| ||| | ||||  ||||||||||||||    
T  28135723 ttgttgtcaaaattccgatttaaatcgtaaaattcaggattttgcgactttattcactttcagtgactcaaatccata 28135800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 127 - 201
Target Start/End: Complemental strand, 22494892 - 22494818
Alignment:
Q  127 acttaaatcctaaaatccaggattttgcgactttcttctccttcaacgactcaaatccataatagaatcccaaaa 201  Q
    |||||||||||||||||   |||||||||||||| ||| |||||||||||| |||| |||| |||||||| ||||    
T  22494892 acttaaatcctaaaatctgagattttgcgacttttttcaccttcaacgactaaaattcatagtagaatcctaaaa 22494818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 108 - 201
Target Start/End: Original strand, 17796485 - 17796578
Alignment:
Q  108 cattgttgtcaaaatcccgacttaaatcctaaaatccaggattttgcgactttcttctccttcaacgactcaaatccataatagaatcccaaaa 201  Q
    |||||||||||||||  ||| ||||||| ||||||| |||||||| ||||||| ||| |||||||| ||| |||| ||||  ||||||| ||||    
T  17796485 cattgttgtcaaaatttcgaattaaatcataaaatctaggatttttcgactttattcaccttcaacaacttaaattcatagcagaatcctaaaa 17796578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 108 - 201
Target Start/End: Original strand, 19104925 - 19105018
Alignment:
Q  108 cattgttgtcaaaatcccgacttaaatcctaaaatccaggattttgcgactttcttctccttcaacgactcaaatccataatagaatcccaaaa 201  Q
    |||||||||||||||  ||| ||||||| ||||||| |||||||| ||||||| ||| |||||||| ||| |||| ||||  ||||||| ||||    
T  19104925 cattgttgtcaaaatttcgaattaaatcataaaatctaggatttttcgactttattcaccttcaacaacttaaattcatagcagaatcctaaaa 19105018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 113 - 157
Target Start/End: Original strand, 42696870 - 42696914
Alignment:
Q  113 ttgtcaaaatcccgacttaaatcctaaaatccaggattttgcgac 157  Q
    ||||||||||||||||||||||| |||||| ||||||||||||||    
T  42696870 ttgtcaaaatcccgacttaaatcataaaattcaggattttgcgac 42696914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 109 - 211
Target Start/End: Original strand, 13005927 - 13006029
Alignment:
Q  109 attgttgtcaaaatcccgacttaaatcctaaaatccaggattttgcgactttcttctccttcaacgactcaaatccataatagaatcccaaaacaggcaa 208  Q
    ||||||||||||||| ||||||||||   ||||| ||  ||||||||||||| ||| |||| |||   |||||||||||  | |||||||||||| ||||    
T  13005927 attgttgtcaaaatctcgacttaaatttcaaaattcataattttgcgactttattcacctttaacatttcaaatccatagcaaaatcccaaaacatgcaa 13006026  T
Q  209 aat 211  Q
    |||    
T  13006027 aat 13006029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 210 - 288
Target Start/End: Complemental strand, 25870293 - 25870216
Alignment:
Q  210 atatatcatttataacatatatttagtattannnnnnncttcgtaaaatccatcaattttgattgcgattttacgattt 288  Q
    ||||| |||||||||||||||||||||||||        || |||||||||||| ||||||||||||||||||| ||||    
T  25870293 atataccatttataacatatatttagtattattgtttt-ttggtaaaatccatcgattttgattgcgattttacaattt 25870216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 252 - 292
Target Start/End: Complemental strand, 10872580 - 10872540
Alignment:
Q  252 gtaaaatccatcaattttgattgcgattttacgatttttga 292  Q
    ||||||||| ||||||||||||||||||||| |||||||||    
T  10872580 gtaaaatccttcaattttgattgcgattttatgatttttga 10872540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 108 - 152
Target Start/End: Complemental strand, 22356183 - 22356139
Alignment:
Q  108 cattgttgtcaaaatcccgacttaaatcctaaaatccaggatttt 152  Q
    ||||||| ||||||| ||||||||||||||||||| |||||||||    
T  22356183 cattgttatcaaaattccgacttaaatcctaaaattcaggatttt 22356139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 252 - 283
Target Start/End: Complemental strand, 3449240 - 3449209
Alignment:
Q  252 gtaaaatccatcaattttgattgcgattttac 283  Q
    ||||||||||||||||||||||||||||||||    
T  3449240 gtaaaatccatcaattttgattgcgattttac 3449209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 254 - 288
Target Start/End: Complemental strand, 8156161 - 8156127
Alignment:
Q  254 aaaatccatcaattttgattgcgattttacgattt 288  Q
    |||||||||| ||||||||||||||||||||||||    
T  8156161 aaaatccatcgattttgattgcgattttacgattt 8156127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 254 - 288
Target Start/End: Complemental strand, 22356083 - 22356049
Alignment:
Q  254 aaaatccatcaattttgattgcgattttacgattt 288  Q
    ||||||||| |||||||||||||||||||||||||    
T  22356083 aaaatccatgaattttgattgcgattttacgattt 22356049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 252 - 289
Target Start/End: Original strand, 13006089 - 13006126
Alignment:
Q  252 gtaaaatccatcaattttgattgcgattttacgatttt 289  Q
    ||||||||  ||||||||||||||||||||||||||||    
T  13006089 gtaaaatcattcaattttgattgcgattttacgatttt 13006126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 252 - 289
Target Start/End: Complemental strand, 24620127 - 24620090
Alignment:
Q  252 gtaaaatccatcaattttgattgcgattttacgatttt 289  Q
    |||||||||| ||||||||||||||||||||| |||||    
T  24620127 gtaaaatccaacaattttgattgcgattttacaatttt 24620090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 252 - 288
Target Start/End: Complemental strand, 6136499 - 6136463
Alignment:
Q  252 gtaaaatccatcaattttgattgcgattttacgattt 288  Q
    |||||||||||| |||||||||| |||||||||||||    
T  6136499 gtaaaatccatcgattttgattgtgattttacgattt 6136463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 252 - 288
Target Start/End: Original strand, 20756221 - 20756257
Alignment:
Q  252 gtaaaatccatcaattttgattgcgattttacgattt 288  Q
    |||||||||||| ||||||||||||||||||| ||||    
T  20756221 gtaaaatccatcgattttgattgcgattttacaattt 20756257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 252 - 288
Target Start/End: Original strand, 28745975 - 28746011
Alignment:
Q  252 gtaaaatccatcaattttgattgcgattttacgattt 288  Q
    |||||||||||| ||||||||||||||||||| ||||    
T  28745975 gtaaaatccatcgattttgattgcgattttacaattt 28746011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 252 - 288
Target Start/End: Original strand, 39428102 - 39428138
Alignment:
Q  252 gtaaaatccatcaattttgattgcgattttacgattt 288  Q
    |||||||||||| ||||||||||||||||||| ||||    
T  39428102 gtaaaatccatcgattttgattgcgattttacaattt 39428138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 79; Significance: 7e-37; HSPs: 36)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 108 - 210
Target Start/End: Complemental strand, 5362093 - 5361991
Alignment:
Q  108 cattgttgtcaaaatcccgacttaaatcctaaaatccaggattttgcgactttcttctccttcaacgactcaaatccataatagaatcccaaaacaggca 207  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||  ||||||||||||||||||||| |||||| |||||| |||||    
T  5362093 cattgttgtcaaaatcccgacttaaatcctaaaattcaggattttgcgactttcttcatcttcaacgactcaaatccatagtagaattccaaaataggca 5361994  T
Q  208 aaa 210  Q
    |||    
T  5361993 aaa 5361991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 108 - 211
Target Start/End: Original strand, 8889227 - 8889330
Alignment:
Q  108 cattgttgtcaaaatcccgacttaaatcctaaaatccaggattttgcgactttcttctccttcaacgactcaaatccataatagaatcccaaaacaggca 207  Q
    ||||| |||||||||||||||||||||||||||||||||||||||| || ||||||| || |||||||||||||| |||||||||||||||||| |||||    
T  8889227 cattgatgtcaaaatcccgacttaaatcctaaaatccaggattttgtgaatttcttcaccatcaacgactcaaattcataatagaatcccaaaataggca 8889326  T
Q  208 aaat 211  Q
    ||||    
T  8889327 aaat 8889330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 109 - 201
Target Start/End: Complemental strand, 8011345 - 8011253
Alignment:
Q  109 attgttgtcaaaatcccgacttaaatcctaaaatccaggattttgcgactttcttctccttcaacgactcaaatccataatagaatcccaaaa 201  Q
    ||||||||||||||||| ||| |||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||    
T  8011345 attgttgtcaaaatcccaactcaaatcctaaaattcaggattttgcgactttcttcaccttcaacgactcaaatccatagtagaatcccaaaa 8011253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 110 - 211
Target Start/End: Original strand, 7044728 - 7044829
Alignment:
Q  110 ttgttgtcaaaatcccgacttaaatcctaaaatccaggattttgcgactttcttctccttcaacgactcaaatccataatagaatcccaaaacaggcaaa 209  Q
    |||||||||||||||||||||||||||||||||||| |||||||| ||||| ||| ||||||||||||||||||||||  |||||||||||| | |||||    
T  7044728 ttgttgtcaaaatcccgacttaaatcctaaaatccatgattttgcaactttattcaccttcaacgactcaaatccatagcagaatcccaaaataagcaaa 7044827  T
Q  210 at 211  Q
    ||    
T  7044828 at 7044829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 105 - 201
Target Start/End: Original strand, 13023563 - 13023660
Alignment:
Q  105 aagcattgttgtcaaaatcccgacttaaatcctaaaa-tccaggattttgcgactttcttctccttcaacgactcaaatccataatagaatcccaaaa 201  Q
    ||||||||||||||||||||| ||||||||||||||| |  |||||||||||||||||||| ||||||| |||||||||||||| |||||||||||||    
T  13023563 aagcattgttgtcaaaatcccaacttaaatcctaaaaatttaggattttgcgactttcttcaccttcaatgactcaaatccatagtagaatcccaaaa 13023660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 109 - 217
Target Start/End: Original strand, 9770112 - 9770220
Alignment:
Q  109 attgttgtcaaaatcccgacttaaatcctaaaatccaggattttgcgactttcttctccttcaacgactcaaatccataatagaatcccaaaacaggcaa 208  Q
    |||||||| |||||| |||||||||| |||||||| ||||||||| |||||| ||| |||||||||||||||||||||| |||||||| |||| || |||    
T  9770112 attgttgttaaaatctcgacttaaattctaaaatctaggattttgtgacttttttcaccttcaacgactcaaatccatagtagaatcctaaaatagacaa 9770211  T
Q  209 aatatatca 217  Q
    ||| |||||    
T  9770212 aatctatca 9770220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 108 - 211
Target Start/End: Complemental strand, 13551752 - 13551649
Alignment:
Q  108 cattgttgtcaaaatcccgacttaaatcctaaaatccaggattttgcgactttcttctccttcaacgactcaaatccataatagaatcccaaaacaggca 207  Q
    |||||||||||||||| ||||||| ||||||||||  |||||||||||||||| ||| |||||||||||||||||||||| ||||||  ||||| || ||    
T  13551752 cattgttgtcaaaatctcgacttatatcctaaaatttaggattttgcgacttttttcaccttcaacgactcaaatccatattagaatttcaaaatagaca 13551653  T
Q  208 aaat 211  Q
    ||||    
T  13551652 aaat 13551649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 108 - 211
Target Start/End: Complemental strand, 18459838 - 18459735
Alignment:
Q  108 cattgttgtcaaaatcccgacttaaatcctaaaatccaggattttgcgactttcttctccttcaacgactcaaatccataatagaatcccaaaacaggca 207  Q
    ||||||||| |||||||||||| ||||||||||||||| |||||||||||| | ||| | ||||||||||||||||||||  ||||||| |||| |||||    
T  18459838 cattgttgtaaaaatcccgactaaaatcctaaaatccaagattttgcgactgtattcactttcaacgactcaaatccatagcagaatcctaaaataggca 18459739  T
Q  208 aaat 211  Q
    ||||    
T  18459738 aaat 18459735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 108 - 201
Target Start/End: Original strand, 24719516 - 24719609
Alignment:
Q  108 cattgttgtcaaaatcccgacttaaatcctaaaatccaggattttgcgactttcttctccttcaacgactcaaatccataatagaatcccaaaa 201  Q
    |||||||||||||||| |||||||| | ||||||| || |||||||||||||| ||| ||||||||||||||||||||||  ||||||| ||||    
T  24719516 cattgttgtcaaaatctcgacttaatttctaaaattcaagattttgcgactttattcaccttcaacgactcaaatccatagcagaatcctaaaa 24719609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 108 - 187
Target Start/End: Complemental strand, 6347194 - 6347115
Alignment:
Q  108 cattgttgtcaaaatcccgacttaaatcctaaaatccaggattttgcgactttcttctccttcaacgactcaaatccata 187  Q
    |||| |||||||||| || |||||||||||||||||||||||||||| ||||| ||  ||||||||||||||||||||||    
T  6347194 cattattgtcaaaattccaacttaaatcctaaaatccaggattttgcaactttatttaccttcaacgactcaaatccata 6347115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 113 - 211
Target Start/End: Original strand, 7815561 - 7815659
Alignment:
Q  113 ttgtcaaaatcccgacttaaatcctaaaatccaggattttgcgactttcttctccttcaacgactcaaatccataatagaatcccaaaacaggcaaaat 211  Q
    |||| ||||||||||||||||||||||||| ||| |||||| |||||| |||  ||| | ||||||||| ||||| ||||||||||||| |||||||||    
T  7815561 ttgttaaaatcccgacttaaatcctaaaatacagcattttgtgactttattcagcttaagcgactcaaacccatagtagaatcccaaaataggcaaaat 7815659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 110 - 211
Target Start/End: Original strand, 17466080 - 17466181
Alignment:
Q  110 ttgttgtcaaaatcccgacttaaatcctaaaatccaggattttgcgactttcttctccttcaacgactcaaatccataatagaatcccaaaacaggcaaa 209  Q
    ||||||||||||| || ||||||||| ||||||  |||||||||||| |||||||  ||| || ||||||||||||||||||||||| |||| | |||||    
T  17466080 ttgttgtcaaaattccaacttaaatcttaaaatttaggattttgcgattttcttcatctttaaggactcaaatccataatagaatcctaaaataagcaaa 17466179  T
Q  210 at 211  Q
    ||    
T  17466180 at 17466181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 106 - 211
Target Start/End: Original strand, 36120821 - 36120926
Alignment:
Q  106 agcattgttgtcaaaatcccgacttaaatcctaaaatccaggattttgcgactttcttctccttcaacgactcaaatccataatagaatcccaaaacagg 205  Q
    ||||||||||||||||| |||| ||||||  ||||||  |||||||||||| ||||||| |||||||||||| |||||||||||| ||| | |||| | |    
T  36120821 agcattgttgtcaaaattccgatttaaattttaaaatttaggattttgcgattttcttcaccttcaacgacttaaatccataataaaattctaaaataag 36120920  T
Q  206 caaaat 211  Q
    ||||||    
T  36120921 caaaat 36120926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 108 - 180
Target Start/End: Original strand, 7452419 - 7452491
Alignment:
Q  108 cattgttgtcaaaatcccgacttaaatcctaaaatccaggattttgcgactttcttctccttcaacgactcaa 180  Q
    ||||||||| ||||||||||||||||| ||||||||||| ||||||| ||||| ||| |||||||||||||||    
T  7452419 cattgttgtgaaaatcccgacttaaattctaaaatccagaattttgcaactttattcaccttcaacgactcaa 7452491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 111 - 194
Target Start/End: Original strand, 5375666 - 5375749
Alignment:
Q  111 tgttgtcaaaatcccgacttaaatcctaaaatccaggattttgcgactttcttctccttcaacgactcaaatccataatagaat 194  Q
    ||||||||||||||| || ||||| |||||||  | |||||||||||||||||| |||||||||||| |||| |||||||||||    
T  5375666 tgttgtcaaaatcccaacctaaattctaaaatttaagattttgcgactttcttcaccttcaacgactaaaattcataatagaat 5375749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 109 - 211
Target Start/End: Original strand, 4156763 - 4156865
Alignment:
Q  109 attgttgtcaaaatcccgacttaaatcctaaaatccaggattttgcgactttcttctccttcaacgactcaaatccataatagaatcccaaaacaggcaa 208  Q
    ||||||||||||||||||||||||||| ||||||  ||||||||  |||||| ||| |||| |||||||||||||  || |||||||| |||| | ||||    
T  4156763 attgttgtcaaaatcccgacttaaatcttaaaatttaggattttatgactttattcacctttaacgactcaaatctgtagtagaatcctaaaataagcaa 4156862  T
Q  209 aat 211  Q
    |||    
T  4156863 aat 4156865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 108 - 186
Target Start/End: Complemental strand, 23065093 - 23065015
Alignment:
Q  108 cattgttgtcaaaatcccgacttaaatcctaaaatccaggattttgcgactttcttctccttcaacgactcaaatccat 186  Q
    ||||||||| |||| |||||||||||| ||||||||||| ||||||  ||||||||| | |||||||||||||||||||    
T  23065093 cattgttgttaaaaccccgacttaaattctaaaatccagtattttgtaactttcttcacattcaacgactcaaatccat 23065015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 109 - 211
Target Start/End: Complemental strand, 9911541 - 9911438
Alignment:
Q  109 attgttgtcaaaatcccgacttaaa-tcctaaaatccaggattttgcgactttcttctccttcaacgactcaaatccataatagaatcccaaaacaggca 207  Q
    ||||||||| ||||||||| ||||| ||||||||| || |||||||| ||||||||| ||||||||| |  ||||||||| |||||||| ||||  ||||    
T  9911541 attgttgtctaaatcccgatttaaaatcctaaaattcaagattttgcaactttcttcaccttcaacggcctaaatccatagtagaatcctaaaattggca 9911442  T
Q  208 aaat 211  Q
    ||||    
T  9911441 aaat 9911438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 108 - 211
Target Start/End: Original strand, 10142898 - 10143001
Alignment:
Q  108 cattgttgtcaaaatcccgacttaaatcctaaaatccaggattttgcgactttcttctccttcaacgactcaaatccataatagaatcccaaaacaggca 207  Q
    ||||||||| ||||||||||||||||| |||||||  |  ||||||||||||||| | ||||||| ||||||| |||||| || ||| |||||| || ||    
T  10142898 cattgttgtgaaaatcccgacttaaattctaaaatttaatattttgcgactttctccaccttcaatgactcaagtccatagtataattccaaaatagaca 10142997  T
Q  208 aaat 211  Q
    ||||    
T  10142998 aaat 10143001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 109 - 160
Target Start/End: Complemental strand, 9149864 - 9149813
Alignment:
Q  109 attgttgtcaaaatcccgacttaaatcctaaaatccaggattttgcgacttt 160  Q
    ||||| ||||||||||||||||||||||||||||  ||||||||||||||||    
T  9149864 attgtggtcaaaatcccgacttaaatcctaaaatttaggattttgcgacttt 9149813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 105 - 159
Target Start/End: Complemental strand, 5846512 - 5846458
Alignment:
Q  105 aagcattgttgtcaaaatcccgacttaaatcctaaaatccaggattttgcgactt 159  Q
    |||||||||||| |||||| |||||||||||  ||||||||||||||||||||||    
T  5846512 aagcattgttgttaaaatcacgacttaaatctcaaaatccaggattttgcgactt 5846458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 108 - 207
Target Start/End: Original strand, 37240261 - 37240355
Alignment:
Q  108 cattgttgtcaaaatcccgacttaaatcctaaaatccaggattttgcgactttcttctccttcaacgactcaaatccataatagaatcccaaaacaggca 207  Q
    ||||||||| |||||||| ||||||||||||||||  ||    || ||||||| ||| |||||||||||||||||||||| ||||| ||||||| |||||    
T  37240261 cattgttgttaaaatccctacttaaatcctaaaatttag----ttacgacttttttcaccttcaacgactcaaatccatagtagaa-cccaaaataggca 37240355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 210 - 288
Target Start/End: Original strand, 5375822 - 5375900
Alignment:
Q  210 atatatcatttataacatatatttagtattannnnnnncttcgtaaaatccatcaattttgattgcgattttacgattt 288  Q
    |||||||||||||||||||||||||||||||        |  |||||||||||| |||||||||| |||||||| ||||    
T  5375822 atatatcatttataacatatatttagtattaattttttttgggtaaaatccatcgattttgattgtgattttacaattt 5375900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 252 - 288
Target Start/End: Original strand, 4157051 - 4157087
Alignment:
Q  252 gtaaaatccatcaattttgattgcgattttacgattt 288  Q
    |||||||||||| ||||||||||||||||||||||||    
T  4157051 gtaaaatccatcgattttgattgcgattttacgattt 4157087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 107 - 153
Target Start/End: Complemental strand, 8744133 - 8744087
Alignment:
Q  107 gcattgttgtcaaaatcccgacttaaatcctaaaatccaggattttg 153  Q
    ||||||||||| |||| ||||||||||||| ||||| ||||||||||    
T  8744133 gcattgttgtcgaaattccgacttaaatccaaaaattcaggattttg 8744087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 254 - 288
Target Start/End: Original strand, 9770210 - 9770244
Alignment:
Q  254 aaaatccatcaattttgattgcgattttacgattt 288  Q
    |||||| ||||||||||||||||||||||||||||    
T  9770210 aaaatctatcaattttgattgcgattttacgattt 9770244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 254 - 288
Target Start/End: Complemental strand, 9911442 - 9911408
Alignment:
Q  254 aaaatccatcaattttgattgcgattttacgattt 288  Q
    |||||||||| ||||||||||||||||||||||||    
T  9911442 aaaatccatcgattttgattgcgattttacgattt 9911408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 253 - 283
Target Start/End: Original strand, 10143100 - 10143130
Alignment:
Q  253 taaaatccatcaattttgattgcgattttac 283  Q
    |||||||||||||||||||||||||||||||    
T  10143100 taaaatccatcaattttgattgcgattttac 10143130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 290
Target Start/End: Original strand, 13023667 - 13023704
Alignment:
Q  253 taaaatccatcaattttgattgcgattttacgattttt 290  Q
    ||||||| ||| ||||||||||||||||||||||||||    
T  13023667 taaaatcaatcgattttgattgcgattttacgattttt 13023704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 240
Target Start/End: Complemental strand, 23064931 - 23064902
Alignment:
Q  211 tatatcatttataacatatatttagtatta 240  Q
    ||||||||||||||||||||||||||||||    
T  23064931 tatatcatttataacatatatttagtatta 23064902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 210 - 288
Target Start/End: Original strand, 36120982 - 36121058
Alignment:
Q  210 atatatcatttataacatatatttagtattannnnnnncttcgtaaaatccatcaattttgattgcgattttacgattt 288  Q
    ||||| ||||||||| |||||||||||||||        || |||||||||||| ||||||||||||||||||| ||||    
T  36120982 atataccatttataaaatatatttagtattattattt--ttggtaaaatccatcgattttgattgcgattttacaattt 36121058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 108 - 160
Target Start/End: Complemental strand, 610720 - 610668
Alignment:
Q  108 cattgttgtcaaaatcccgacttaaatcctaaaatccaggattttgcgacttt 160  Q
    |||||||||||||||||| |||||||| ||||||| || || | |||||||||    
T  610720 cattgttgtcaaaatcccaacttaaatactaaaattcatgactatgcgacttt 610668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 252 - 292
Target Start/End: Complemental strand, 5943124 - 5943084
Alignment:
Q  252 gtaaaatccatcaattttgattgcgattttacgatttttga 292  Q
    ||||||||| ||||||||  |||||||||||||||||||||    
T  5943124 gtaaaatccttcaattttacttgcgattttacgatttttga 5943084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 252 - 292
Target Start/End: Original strand, 7045208 - 7045248
Alignment:
Q  252 gtaaaatccatcaattttgattgcgattttacgatttttga 292  Q
    ||||||||| || |||||||||||||||||| |||||||||    
T  7045208 gtaaaatccttcgattttgattgcgattttatgatttttga 7045248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 252 - 292
Target Start/End: Original strand, 10394874 - 10394914
Alignment:
Q  252 gtaaaatccatcaattttgattgcgattttacgatttttga 292  Q
    ||||| ||| || ||||||||||||||||||||||||||||    
T  10394874 gtaaagtccttcgattttgattgcgattttacgatttttga 10394914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 253 - 285
Target Start/End: Complemental strand, 23064825 - 23064793
Alignment:
Q  253 taaaatccatcaattttgattgcgattttacga 285  Q
    |||||||| ||||||||||||||||||||||||    
T  23064825 taaaatccttcaattttgattgcgattttacga 23064793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 73; Significance: 3e-33; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 109 - 209
Target Start/End: Original strand, 20923718 - 20923818
Alignment:
Q  109 attgttgtcaaaatcccgacttaaatcctaaaatccaggattttgcgactttcttctccttcaacgactcaaatccataatagaatcccaaaacaggcaa 208  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||  ||||||||| |||||||| |||| ||||||    
T  20923718 attgttgtcaaaatcccgacttaaatcctaaaatccagaattttgcgactttcttcaccttcaacgacctaaatccatagtagaatcctaaaataggcaa 20923817  T
Q  209 a 209  Q
    |    
T  20923818 a 20923818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 109 - 211
Target Start/End: Original strand, 43234868 - 43234970
Alignment:
Q  109 attgttgtcaaaatcccgacttaaatcctaaaatccaggattttgcgactttcttctccttcaacgactcaaatccataatagaatcccaaaacaggcaa 208  Q
    ||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| |||||||||||| ||||||||| |||||||| |||| ||| ||    
T  43234868 attgttgtcaaaatcccaacttaaatcctaaaattcaggattttgcgactttcttcaccttcaacgacttaaatccatagtagaatcctaaaataggaaa 43234967  T
Q  209 aat 211  Q
    |||    
T  43234968 aat 43234970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 108 - 201
Target Start/End: Complemental strand, 22645849 - 22645756
Alignment:
Q  108 cattgttgtcaaaatcccgacttaaatcctaaaatccaggattttgcgactttcttctccttcaacgactcaaatccataatagaatcccaaaa 201  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| | ||||||||| || ||||||||||    
T  22645849 cattgttgtcaaaatcccgacttaaatcctaaaatccagtattttgcgactttcttcaccttcaacgatttaaatccatagtaaaatcccaaaa 22645756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 110 - 211
Target Start/End: Complemental strand, 23172560 - 23172459
Alignment:
Q  110 ttgttgtcaaaatcccgacttaaatcctaaaatccaggattttgcgactttcttctccttcaacgactcaaatccataatagaatcccaaaacaggcaaa 209  Q
    |||||||||||||||||||||||||||||||||  ||||||||||||||||||||  ||||||||||| ||||||||| ||||||||||||| || ||||    
T  23172560 ttgttgtcaaaatcccgacttaaatcctaaaatttaggattttgcgactttcttcatcttcaacgacttaaatccatagtagaatcccaaaatagacaaa 23172461  T
Q  210 at 211  Q
    ||    
T  23172460 at 23172459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 108 - 211
Target Start/End: Complemental strand, 18051660 - 18051557
Alignment:
Q  108 cattgttgtcaaaatcccgacttaaatcctaaaatccaggattttgcgactttcttctccttcaacgactcaaatccataatagaatcccaaaacaggca 207  Q
    |||||||||||||||||||||||||||||||||||  ||||||||||||||||||||  ||||||||||||||||| ||| |||||| | |||| |||||    
T  18051660 cattgttgtcaaaatcccgacttaaatcctaaaatataggattttgcgactttcttcaacttcaacgactcaaatctatagtagaattctaaaataggca 18051561  T
Q  208 aaat 211  Q
    ||||    
T  18051560 aaat 18051557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 108 - 211
Target Start/End: Original strand, 19578941 - 19579044
Alignment:
Q  108 cattgttgtcaaaatcccgacttaaatcctaaaatccaggattttgcgactttcttctccttcaacgactcaaatccataatagaatcccaaaacaggca 207  Q
    ||||||||||||||| || ||||||||| |||||||||||||||||||| ||||||| |||||||||||| ||||||||| ||||||||||||| | |||    
T  19578941 cattgttgtcaaaattccaacttaaatcataaaatccaggattttgcgattttcttcaccttcaacgacttaaatccatagtagaatcccaaaataagca 19579040  T
Q  208 aaat 211  Q
    ||||    
T  19579041 aaat 19579044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 108 - 211
Target Start/End: Complemental strand, 21059285 - 21059183
Alignment:
Q  108 cattgttgtcaaaatcccgacttaaatcctaaaatccaggattttgcgactttcttctccttcaacgactcaaatccataatagaatcccaaaacaggca 207  Q
    |||||||||||||||||||| ||||||||||||||| |||||||||||||||||||| | |||||||||||||||||||  ||||||||| ||| |||||    
T  21059285 cattgttgtcaaaatcccgatttaaatcctaaaatctaggattttgcgactttcttcactttcaacgactcaaatccat-gtagaatccctaaataggca 21059187  T
Q  208 aaat 211  Q
    ||||    
T  21059186 aaat 21059183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 110 - 211
Target Start/End: Original strand, 18843716 - 18843817
Alignment:
Q  110 ttgttgtcaaaatcccgacttaaatcctaaaatccaggattttgcgactttcttctccttcaacgactcaaatccataatagaatcccaaaacaggcaaa 209  Q
    ||||||| ||||| ||||||||||||||| ||| ||||||||||||||||||||| |||||||||||||||||||||  ||||||||||||| || ||||    
T  18843716 ttgttgttaaaattccgacttaaatcctataattcaggattttgcgactttcttcaccttcaacgactcaaatccattgtagaatcccaaaatagacaaa 18843815  T
Q  210 at 211  Q
    ||    
T  18843816 at 18843817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 109 - 211
Target Start/End: Complemental strand, 38158383 - 38158281
Alignment:
Q  109 attgttgtcaaaatcccgacttaaatcctaaaatccaggattttgcgactttcttctccttcaacgactcaaatccataatagaatcccaaaacaggcaa 208  Q
    |||||||||||||| |||||||||||||||||||| |||||||||||||||||||  | |||||| ||||||||||| | ||||||||||||| || |||    
T  38158383 attgttgtcaaaattccgacttaaatcctaaaatctaggattttgcgactttcttgactttcaacaactcaaatccagagtagaatcccaaaatagacaa 38158284  T
Q  209 aat 211  Q
    |||    
T  38158283 aat 38158281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 117 - 211
Target Start/End: Complemental strand, 27340307 - 27340213
Alignment:
Q  117 caaaatcccgacttaaatcctaaaatccaggattttgcgactttcttctccttcaacgactcaaatccataatagaatcccaaaacaggcaaaat 211  Q
    ||||||||||||||||||| ||||||  | ||||||||||||||||||  ||||||||||||||||| ||| |||||||  |||| |||||||||    
T  27340307 caaaatcccgacttaaatcataaaatttatgattttgcgactttcttcatcttcaacgactcaaatctatagtagaatcttaaaataggcaaaat 27340213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 111 - 183
Target Start/End: Complemental strand, 19042516 - 19042444
Alignment:
Q  111 tgttgtcaaaatcccgacttaaatcctaaaatccaggattttgcgactttcttctccttcaacgactcaaatc 183  Q
    ||||||||||||||| |||||||| |||||||  | ||||||| |||||||||| ||||||||||||||||||    
T  19042516 tgttgtcaaaatcccaacttaaattctaaaatttaagattttgtgactttcttcaccttcaacgactcaaatc 19042444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 210 - 288
Target Start/End: Original strand, 20321100 - 20321178
Alignment:
Q  210 atatatcatttataacatatatttagtattannnnnnncttcgtaaaatccatcaattttgattgcgattttacgattt 288  Q
    ||||||||||||||||||||||||| |||||       ||  |||||||||||| ||||||||||||||||||| ||||    
T  20321100 atatatcatttataacatatatttaatattaattttttctgggtaaaatccatcgattttgattgcgattttacaattt 20321178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 113 - 182
Target Start/End: Original strand, 24106645 - 24106714
Alignment:
Q  113 ttgtcaaaatcccgacttaaatcctaaaatccaggattttgcgactttcttctccttcaacgactcaaat 182  Q
    |||||||||||| || ||||||| |||||| ||||||||||| ||||||||| ||  |||||||||||||    
T  24106645 ttgtcaaaatcctgatttaaatcataaaattcaggattttgcaactttcttcaccagcaacgactcaaat 24106714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 111 - 175
Target Start/End: Original strand, 20320926 - 20320990
Alignment:
Q  111 tgttgtcaaaatcccgacttaaatcctaaaatccaggattttgcgactttcttctccttcaacga 175  Q
    ||||||||||||||| || |||||||||||||  | |||||||| ||||||||| ||||||||||    
T  20320926 tgttgtcaaaatcccaacctaaatcctaaaatttaagattttgcaactttcttcaccttcaacga 20320990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 112 - 211
Target Start/End: Original strand, 41427087 - 41427187
Alignment:
Q  112 gttgtcaaaatcccgacttaaatcctaaaatccaggattttgcgactttcttctccttcaacgactcaaatccataatagaatccca-aaacaggcaaaa 210  Q
    |||||||||||| |||||| | ||| |||||||||| |||||| |||||      |||||||||||||||||||||  ||||||||| ||||||||||||    
T  41427087 gttgtcaaaatcgcgacttcagtcccaaaatccaggtttttgcaactttgcgtagcttcaacgactcaaatccatagcagaatcccataaacaggcaaaa 41427186  T
Q  211 t 211  Q
    |    
T  41427187 t 41427187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 110 - 210
Target Start/End: Complemental strand, 13350188 - 13350088
Alignment:
Q  110 ttgttgtcaaaatcccgacttaaatcctaaaatccaggattttgcgactttcttctccttcaacgactcaaatccataatagaatcccaaaacaggcaaa 209  Q
    |||||||||||||| | |||||||||| |||||||| |||||||| |||||  || |||||| |||| || |||| | | | ||||| ||||||| ||||    
T  13350188 ttgttgtcaaaatcacaacttaaatcccaaaatccaagattttgcaactttactcaccttcatcgacccatatccgttacaaaatccaaaaacagacaaa 13350089  T
Q  210 a 210  Q
    |    
T  13350088 a 13350088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 120 - 182
Target Start/End: Complemental strand, 41688782 - 41688721
Alignment:
Q  120 aatcccgacttaaatcctaaaatccaggattttgcgactttcttctccttcaacgactcaaat 182  Q
    |||||| |||||||||||||||| | ||||||||| | ||||||| |||||||||||| ||||    
T  41688782 aatcccaacttaaatcctaaaattc-ggattttgcaattttcttcaccttcaacgacttaaat 41688721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 210 - 288
Target Start/End: Original strand, 18843873 - 18843950
Alignment:
Q  210 atatatcatttataacatatatttagtattannnnnnncttcgtaaaatccatcaattttgattgcgattttacgattt 288  Q
    ||||| |||||||||||||||||||||||||        |  |||||||||||| ||||||||||||||||||| ||||    
T  18843873 atataccatttataacatatatttagtattaatttttt-tgggtaaaatccatcgattttgattgcgattttacaattt 18843950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 252 - 289
Target Start/End: Original strand, 19579142 - 19579179
Alignment:
Q  252 gtaaaatccatcaattttgattgcgattttacgatttt 289  Q
    |||||||||||| ||||||||||||||||||| |||||    
T  19579142 gtaaaatccatcgattttgattgcgattttacaatttt 19579179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 211
Target Start/End: Original strand, 19979648 - 19979701
Alignment:
Q  158 tttcttctccttcaacgactcaaatccataatagaatcccaaaacaggcaaaat 211  Q
    |||||||  |||||||||||||||| |||  ||||||||||||||| |||||||    
T  19979648 tttcttcatcttcaacgactcaaattcatggtagaatcccaaaacacgcaaaat 19979701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 108 - 152
Target Start/End: Complemental strand, 13342116 - 13342072
Alignment:
Q  108 cattgttgtcaaaatcccgacttaaatcctaaaatccaggatttt 152  Q
    |||||||||||||||| ||| |||||||  |||||||||||||||    
T  13342116 cattgttgtcaaaatcgcgatttaaatcgcaaaatccaggatttt 13342072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 108 - 160
Target Start/End: Original strand, 24647938 - 24647990
Alignment:
Q  108 cattgttgtcaaaatcccgacttaaatcctaaaatccaggattttgcgacttt 160  Q
    ||||||||||||||| |||||||||||| ||||||  | ||| ||||||||||    
T  24647938 cattgttgtcaaaattccgacttaaatcttaaaatttaagatattgcgacttt 24647990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 252 - 288
Target Start/End: Complemental strand, 38158194 - 38158158
Alignment:
Q  252 gtaaaatccatcaattttgattgcgattttacgattt 288  Q
    ||||||||||||||||||||||| |||||||| ||||    
T  38158194 gtaaaatccatcaattttgattgtgattttacaattt 38158158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 72; Significance: 1e-32; HSPs: 42)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 108 - 211
Target Start/End: Complemental strand, 24725607 - 24725504
Alignment:
Q  108 cattgttgtcaaaatcccgacttaaatcctaaaatccaggattttgcgactttcttctccttcaacgactcaaatccataatagaatcccaaaacaggca 207  Q
    ||||||||||||||||| |||||||||||||||||||| |||||| ||||||||||| |||||||| ||||||||||||| ||||||| ||||| |||||    
T  24725607 cattgttgtcaaaatccagacttaaatcctaaaatccaagattttacgactttcttcaccttcaacaactcaaatccatagtagaatcgcaaaataggca 24725508  T
Q  208 aaat 211  Q
    ||||    
T  24725507 aaat 24725504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 108 - 211
Target Start/End: Complemental strand, 26281439 - 26281336
Alignment:
Q  108 cattgttgtcaaaatcccgacttaaatcctaaaatccaggattttgcgactttcttctccttcaacgactcaaatccataatagaatcccaaaacaggca 207  Q
    ||||||||||||||| |||||||||||| |||||| ||||||||||||||||||||| |||||||||||||||||||||  |||||| |||||| | |||    
T  26281439 cattgttgtcaaaattccgacttaaatcataaaattcaggattttgcgactttcttcaccttcaacgactcaaatccattgtagaattccaaaataagca 26281340  T
Q  208 aaat 211  Q
    ||||    
T  26281339 aaat 26281336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 108 - 211
Target Start/End: Original strand, 39182259 - 39182361
Alignment:
Q  108 cattgttgtcaaaatcccgacttaaatcctaaaatccaggattttgcgactttcttctccttcaacgactcaaatccataatagaatcccaaaacaggca 207  Q
    |||||||| |||||||| |||||||||||||||||| ||||||||||||| |||||| |||||||||||| ||||||||| ||||||||||||| |||||    
T  39182259 cattgttgacaaaatcctgacttaaatcctaaaatctaggattttgcgac-ttcttcaccttcaacgactgaaatccatagtagaatcccaaaataggca 39182357  T
Q  208 aaat 211  Q
    ||||    
T  39182358 aaat 39182361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 109 - 211
Target Start/End: Complemental strand, 22687793 - 22687691
Alignment:
Q  109 attgttgtcaaaatcccgacttaaatcctaaaatccaggattttgcgactttcttctccttcaacgactcaaatccataatagaatcccaaaacaggcaa 208  Q
    |||||||||||||||||||||||||||||||||| ||||| |||||||||||||||  ||||||| ||||||||||||   |||||||||||| ||||||    
T  22687793 attgttgtcaaaatcccgacttaaatcctaaaattcaggaatttgcgactttcttcaacttcaacaactcaaatccatcgcagaatcccaaaataggcaa 22687694  T
Q  209 aat 211  Q
    |||    
T  22687693 aat 22687691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 108 - 201
Target Start/End: Complemental strand, 8343930 - 8343837
Alignment:
Q  108 cattgttgtcaaaatcccgacttaaatcctaaaatccaggattttgcgactttcttctccttcaacgactcaaatccataatagaatcccaaaa 201  Q
    ||||||||||||||||  | | ||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| |||||||||||||    
T  8343930 cattgttgtcaaaatcttggcctaaatcctaaaatcctggattttgcgactttcttcaccttcaacgactcaaatccatagtagaatcccaaaa 8343837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 116 - 201
Target Start/End: Original strand, 8571250 - 8571335
Alignment:
Q  116 tcaaaatcccgacttaaatcctaaaatccaggattttgcgactttcttctccttcaacgactcaaatccataatagaatcccaaaa 201  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||| |||| ||||||||||||||||| |||||||| ||||    
T  8571250 tcaaaatcccgacttaaatcataaaatccaggattttgcgactttcttcacctttaacgactcaaatccatagtagaatcctaaaa 8571335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 107 - 211
Target Start/End: Original strand, 14055249 - 14055353
Alignment:
Q  107 gcattgttgtcaaaatcccgacttaaatcctaaaatccaggattttgcgactttcttctccttcaacgactcaaatccataatagaatcccaaaacaggc 206  Q
    |||||||||| |||||||| ||||| ||||||||||||| |||||||||||||||||| |||||||||||||||||| ||| |||||| | |||| ||||    
T  14055249 gcattgttgtgaaaatccccacttatatcctaaaatccaagattttgcgactttcttcaccttcaacgactcaaatctatagtagaattctaaaataggc 14055348  T
Q  207 aaaat 211  Q
    |||||    
T  14055349 aaaat 14055353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 107 - 211
Target Start/End: Original strand, 14365277 - 14365381
Alignment:
Q  107 gcattgttgtcaaaatcccgacttaaatcctaaaatccaggattttgcgactttcttctccttcaacgactcaaatccataatagaatcccaaaacaggc 206  Q
    |||||||||| |||||||| ||||| ||||||||||||| |||||||||||||||||| |||||||||||||||||| ||| |||||| | |||| ||||    
T  14365277 gcattgttgtgaaaatccccacttatatcctaaaatccaagattttgcgactttcttcaccttcaacgactcaaatctatagtagaattctaaaataggc 14365376  T
Q  207 aaaat 211  Q
    |||||    
T  14365377 aaaat 14365381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 108 - 211
Target Start/End: Complemental strand, 8330175 - 8330072
Alignment:
Q  108 cattgttgtcaaaatcccgacttaaatcctaaaatccaggattttgcgactttcttctccttcaacgactcaaatccataatagaatcccaaaacaggca 207  Q
    ||||||||||||||||| ||| ||||| ||||||| || |||||||||||||||||| |||||||||| ||||||||||| ||||||||||||| ||| |    
T  8330175 cattgttgtcaaaatcctgacctaaattctaaaattcatgattttgcgactttcttcaccttcaacgattcaaatccatagtagaatcccaaaataggaa 8330076  T
Q  208 aaat 211  Q
    ||||    
T  8330075 aaat 8330072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 109 - 216
Target Start/End: Original strand, 11326386 - 11326493
Alignment:
Q  109 attgttgtcaaaatcccgacttaaatcctaaaatccaggattttgcgactttcttctccttcaacgactcaaatccataatagaatcccaaaacaggcaa 208  Q
    ||||||||||||||||| ||||||||||||||||  |||||||||||||||||||| |||||| ||||| ||||||||| |||||||  |||| ||||||    
T  11326386 attgttgtcaaaatcccaacttaaatcctaaaatttaggattttgcgactttcttcaccttcagcgactaaaatccatagtagaatcttaaaataggcaa 11326485  T
Q  209 aatatatc 216  Q
    ||| ||||    
T  11326486 aatctatc 11326493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 110 - 211
Target Start/End: Original strand, 5058530 - 5058631
Alignment:
Q  110 ttgttgtcaaaatcccgacttaaatcctaaaatccaggattttgcgactttcttctccttcaacgactcaaatccataatagaatcccaaaacaggcaaa 209  Q
    ||||||||||||||||||||||||||||||||| ||| ||||||||| ||||||| |||||||||||  ||||||||| |||||||  |||| |||||||    
T  5058530 ttgttgtcaaaatcccgacttaaatcctaaaattcagaattttgcgattttcttcaccttcaacgacctaaatccatagtagaatcttaaaataggcaaa 5058629  T
Q  210 at 211  Q
    ||    
T  5058630 at 5058631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 118 - 211
Target Start/End: Original strand, 11324988 - 11325081
Alignment:
Q  118 aaaatcccgacttaaatcctaaaatccaggattttgcgactttcttctccttcaacgactcaaatccataatagaatcccaaaacaggcaaaat 211  Q
    ||||||||||||||||||||||||| || ||||||| || ||||||| ||||||||||||||||||||||||||||| | |||| |||||||||    
T  11324988 aaaatcccgacttaaatcctaaaattcatgattttgggattttcttcaccttcaacgactcaaatccataatagaattctaaaataggcaaaat 11325081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 109 - 211
Target Start/End: Complemental strand, 44944978 - 44944872
Alignment:
Q  109 attgttgtcaaaatcccgacttaaatcctaaaatccaggattttgcgactttct----tctccttcaacgactcaaatccataatagaatcccaaaacag 204  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||    || |||||||||| ||||||||||| |||||||| |||| ||    
T  44944978 attgttgtcaaaatcccgacttaaatcctaaaattcaggattttgcgactttcttcactcaccttcaacgattcaaatccatagtagaatcctaaaatag 44944879  T
Q  205 gcaaaat 211  Q
     ||||||    
T  44944878 tcaaaat 44944872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 111 - 211
Target Start/End: Complemental strand, 8346660 - 8346560
Alignment:
Q  111 tgttgtcaaaatcccgacttaaatcctaaaatccaggattttgcgactttcttctccttcaacgactcaaatccataatagaatcccaaaacaggcaaaa 210  Q
    |||||||||||||| ||| |||||  ||||||  |||||||||||||||||||| |||||||||||||||||||||| ||||||||||||| ||| ||||    
T  8346660 tgttgtcaaaatcctgacctaaatattaaaatttaggattttgcgactttcttcaccttcaacgactcaaatccatagtagaatcccaaaataggaaaaa 8346561  T
Q  211 t 211  Q
    |    
T  8346560 t 8346560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 108 - 211
Target Start/End: Complemental strand, 7730472 - 7730370
Alignment:
Q  108 cattgttgtcaaaatcccgacttaaatcctaaaatccaggattttgcgactttcttctccttcaacgactcaaatccataatagaatcccaaaacaggca 207  Q
    ||||||||||||||||| |||||||||||||||||||||| |||||||||||||||| |||| ||| ||||||||||| | |||||| |||||| ||| |    
T  7730472 cattgttgtcaaaatcctgacttaaatcctaaaatccagg-ttttgcgactttcttcacctttaacaactcaaatccacagtagaattccaaaataggaa 7730374  T
Q  208 aaat 211  Q
    ||||    
T  7730373 aaat 7730370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 108 - 211
Target Start/End: Complemental strand, 9685374 - 9685271
Alignment:
Q  108 cattgttgtcaaaatcccgacttaaatcctaaaatccaggattttgcgactttcttctccttcaacgactcaaatccataatagaatcccaaaacaggca 207  Q
    |||||||||||||||| ||||||| ||||||||||  |||||||||||||||| ||| |||||||||||||||||||||| ||||||  ||||| || ||    
T  9685374 cattgttgtcaaaatctcgacttatatcctaaaatttaggattttgcgacttttttcaccttcaacgactcaaatccatattagaatttcaaaatagaca 9685275  T
Q  208 aaat 211  Q
    ||||    
T  9685274 aaat 9685271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 109 - 211
Target Start/End: Original strand, 4247356 - 4247458
Alignment:
Q  109 attgttgtcaaaatcccgacttaaatcctaaaatccaggattttgcgactttcttctccttcaacgactcaaatccataatagaatcccaaaacaggcaa 208  Q
    ||||||||||||||||| | |||||||||||||| ||||||||||  ||||||||| | |||||| ||| ||||||||| ||||||||||||| ||||||    
T  4247356 attgttgtcaaaatcccaatttaaatcctaaaattcaggattttgtaactttcttcactttcaacaacttaaatccatagtagaatcccaaaataggcaa 4247455  T
Q  209 aat 211  Q
    |||    
T  4247456 aat 4247458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 109 - 211
Target Start/End: Complemental strand, 21846554 - 21846453
Alignment:
Q  109 attgttgtcaaaatcccgacttaaatcctaaaatccaggattttgcgactttcttctccttcaacgactcaaatccataatagaatcccaaaacaggcaa 208  Q
    |||||||||||||||||||||||||| ||||||| ||||||||||||||||| ||| | |||||||||||| ||||||| |||||| | |||||||| ||    
T  21846554 attgttgtcaaaatcccgacttaaattctaaaattcaggattttgcgacttt-ttcacattcaacgactcacatccatagtagaattctaaaacaggtaa 21846456  T
Q  209 aat 211  Q
    |||    
T  21846455 aat 21846453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 109 - 211
Target Start/End: Complemental strand, 24990200 - 24990098
Alignment:
Q  109 attgttgtcaaaatcccgacttaaatcctaaaatccaggattttgcgactttcttctccttcaacgactcaaatccataatagaatcccaaaacaggcaa 208  Q
    |||||||||||||| ||||||||||||| |||||  ||||||||| |||||||||  ||| |||||||||||||||||| |||||||| |||| ||||||    
T  24990200 attgttgtcaaaattccgacttaaatccaaaaatttaggattttgtgactttctttacctccaacgactcaaatccatagtagaatcctaaaataggcaa 24990101  T
Q  209 aat 211  Q
    |||    
T  24990100 aat 24990098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 107 - 195
Target Start/End: Original strand, 27221416 - 27221504
Alignment:
Q  107 gcattgttgtcaaaatcccgacttaaatcctaaaatccaggattttgcgactttcttctccttcaacgactcaaatccataatagaatc 195  Q
    |||||||||| |||||||| |||||||| ||||||| |||||||||||||||||||||  |||||||||||||||| |||| |||||||    
T  27221416 gcattgttgttaaaatcccaacttaaattctaaaattcaggattttgcgactttcttcatcttcaacgactcaaatacatagtagaatc 27221504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 109 - 211
Target Start/End: Original strand, 5715290 - 5715391
Alignment:
Q  109 attgttgtcaaaatcccgacttaaatcctaaaatccaggattttgcgactttcttctccttcaacgactcaaatccataatagaatcccaaaacaggcaa 208  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||| | | |||||||| ||| |||| |||| |||||| |||||| | ||||    
T  5715290 attgttgtcaaaatcccgacttaaatcctaaaattcaggattttgcgacttt-tacaccttcaacaacttaaattcatagtagaattccaaaataagcaa 5715388  T
Q  209 aat 211  Q
    |||    
T  5715389 aat 5715391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 109 - 211
Target Start/End: Original strand, 30294175 - 30294274
Alignment:
Q  109 attgttgtcaaaatcccgacttaaatcctaaaatccaggattttgcgactttcttctccttcaacgactcaaatccataatagaatcccaaaacaggcaa 208  Q
    ||||||||||||||||| ||||||||||||||||||||||||||| || ||| ||| ||||   |||||||||||||||  | |||| ||||| ||||||    
T  30294175 attgttgtcaaaatcccaacttaaatcctaaaatccaggattttgtgattttattcacctt---cgactcaaatccatagcaaaatctcaaaataggcaa 30294271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 108 - 195
Target Start/End: Complemental strand, 8630088 - 8630001
Alignment:
Q  108 cattgttgtcaaaatcccgacttaaatcctaaaatccaggattttgcgactttcttctccttcaacgactcaaatccataatagaatc 195  Q
    |||||||||||||||| |||||||| ||| |||||| |||||||||| |||||  |   ||||||||||||||||||||| |||||||    
T  8630088 cattgttgtcaaaatcgcgacttaagtcccaaaatctaggattttgcaactttacttaacttcaacgactcaaatccatagtagaatc 8630001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 113 - 182
Target Start/End: Original strand, 4574475 - 4574544
Alignment:
Q  113 ttgtcaaaatcccgacttaaatcctaaaatccaggattttgcgactttcttctccttcaacgactcaaat 182  Q
    |||| ||||||  ||||||||||||||||||||| |||||||||||||  || |||||||||| ||||||    
T  4574475 ttgtgaaaatcatgacttaaatcctaaaatccagaattttgcgactttactcaccttcaacgattcaaat 4574544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 214 - 288
Target Start/End: Complemental strand, 7730327 - 7730253
Alignment:
Q  214 atcatttataacatatatttagtattannnnnnncttcgtaaaatccatcaattttgattgcgattttacgattt 288  Q
    ||||||||||||||||||||||||||         || |||||||||||||||||||||||||||||||| ||||    
T  7730327 atcatttataacatatatttagtattttttttttgttggtaaaatccatcaattttgattgcgattttacaattt 7730253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 108 - 176
Target Start/End: Complemental strand, 26617606 - 26617538
Alignment:
Q  108 cattgttgtcaaaatcccgacttaaatcctaaaatccaggattttgcgactttcttctccttcaacgac 176  Q
    ||||||| | ||||| | ||||| ||||||||||| ||||||||||||||||| ||| |||||||||||    
T  26617606 cattgttttgaaaattctgactttaatcctaaaattcaggattttgcgacttttttcaccttcaacgac 26617538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 108 - 187
Target Start/End: Complemental strand, 21157904 - 21157825
Alignment:
Q  108 cattgttgtcaaaatcccgacttaaatcctaaaatccaggattttgcgactttcttctccttcaacgactcaaatccata 187  Q
    |||||||||| |||| | |||||||||| |||||| |||| ||||||||||||  || | | ||||||||||||||||||    
T  21157904 cattgttgtcgaaattctgacttaaatcttaaaattcagggttttgcgactttactcacttacaacgactcaaatccata 21157825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 252 - 290
Target Start/End: Complemental strand, 26565478 - 26565440
Alignment:
Q  252 gtaaaatccatcaattttgattgcgattttacgattttt 290  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  26565478 gtaaaatccatcaattttgattgcaattttacgattttt 26565440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 210 - 288
Target Start/End: Complemental strand, 21846417 - 21846341
Alignment:
Q  210 atatatcatttataacatatatttagtattannnnnnncttcgtaaaatccatcaattttgattgcgattttacgattt 288  Q
    ||||||||||||||||||||||||| |||||        |  ||||||||||||||||||||||| |||||||||||||    
T  21846417 atatatcatttataacatatatttaatattatttatt--tgggtaaaatccatcaattttgattgtgattttacgattt 21846341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 147 - 194
Target Start/End: Original strand, 17811385 - 17811432
Alignment:
Q  147 gattttgcgactttcttctccttcaacgactcaaatccataatagaat 194  Q
    ||||||| |||||| ||| |||||||||||||||||||||| ||||||    
T  17811385 gattttgtgacttttttcaccttcaacgactcaaatccatagtagaat 17811432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 149 - 211
Target Start/End: Original strand, 1977692 - 1977754
Alignment:
Q  149 ttttgcgactttcttctccttcaacgactcaaatccataatagaatcccaaaacaggcaaaat 211  Q
    |||||||| ||| | | |||||||||||||||||||||| |||||||| |||| | |||||||    
T  1977692 ttttgcgattttttccaccttcaacgactcaaatccatagtagaatcctaaaatatgcaaaat 1977754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 254 - 288
Target Start/End: Complemental strand, 8343831 - 8343797
Alignment:
Q  254 aaaatccatcaattttgattgcgattttacgattt 288  Q
    |||||||||||||||| ||||||||||||||||||    
T  8343831 aaaatccatcaattttaattgcgattttacgattt 8343797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 254 - 288
Target Start/End: Complemental strand, 22687695 - 22687661
Alignment:
Q  254 aaaatccatcaattttgattgcgattttacgattt 288  Q
    |||||||||| ||||||||||||||||||||||||    
T  22687695 aaaatccatcgattttgattgcgattttacgattt 22687661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 254 - 288
Target Start/End: Original strand, 27221516 - 27221550
Alignment:
Q  254 aaaatccatcaattttgattgcgattttacgattt 288  Q
    |||||||||| ||||||||||||||||||||||||    
T  27221516 aaaatccatcgattttgattgcgattttacgattt 27221550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 254 - 288
Target Start/End: Complemental strand, 27509974 - 27509940
Alignment:
Q  254 aaaatccatcaattttgattgcgattttacgattt 288  Q
    ||||| |||||||||||||||||||||||||||||    
T  27509974 aaaattcatcaattttgattgcgattttacgattt 27509940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 210 - 288
Target Start/End: Original strand, 4247514 - 4247591
Alignment:
Q  210 atatatcatttataacatatatttagtattannnnnnncttcgtaaaatccatcaattttgattgcgattttacgattt 288  Q
    ||||||||||| |||||||||||||||||||        |  |||||||||||| |||||||||||||||||| |||||    
T  4247514 atatatcatttgtaacatatatttagtattattttttt-taggtaaaatccatcgattttgattgcgattttatgattt 4247591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 252 - 289
Target Start/End: Original strand, 17741908 - 17741945
Alignment:
Q  252 gtaaaatccatcaattttgattgcgattttacgatttt 289  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  17741908 gtaaaatccttcaattttgattgcaattttacgatttt 17741945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 252 - 289
Target Start/End: Original strand, 17811547 - 17811584
Alignment:
Q  252 gtaaaatccatcaattttgattgcgattttacgatttt 289  Q
    |||||||||||| ||||||||||||||||||| |||||    
T  17811547 gtaaaatccatcgattttgattgcgattttacaatttt 17811584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 164
Target Start/End: Complemental strand, 20571002 - 20570953
Alignment:
Q  115 gtcaaaatcccgacttaaatcctaaaatccaggattttgcgactttcttc 164  Q
    |||||| ||||||||||||| || ||||||| ||||||| ||||||||||    
T  20571002 gtcaaactcccgacttaaattctgaaatccaagattttgtgactttcttc 20570953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 253 - 289
Target Start/End: Complemental strand, 21157557 - 21157521
Alignment:
Q  253 taaaatccatcaattttgattgcgattttacgatttt 289  Q
    |||||||| ||||||||||||| ||||||||||||||    
T  21157557 taaaatccttcaattttgattgagattttacgatttt 21157521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #41
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 252 - 288
Target Start/End: Complemental strand, 24725402 - 24725366
Alignment:
Q  252 gtaaaatccatcaattttgattgcgattttacgattt 288  Q
    |||||||||||| ||||||||||||||||||| ||||    
T  24725402 gtaaaatccatcgattttgattgcgattttacaattt 24725366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #42
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 254 - 286
Target Start/End: Complemental strand, 26281251 - 26281219
Alignment:
Q  254 aaaatccatcaattttgattgcgattttacgat 286  Q
    ||||||| |||||||||||||||||||||||||    
T  26281251 aaaatccttcaattttgattgcgattttacgat 26281219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0186 (Bit Score: 68; Significance: 3e-30; HSPs: 3)
Name: scaffold0186
Description:

Target: scaffold0186; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 108 - 211
Target Start/End: Original strand, 8442 - 8545
Alignment:
Q  108 cattgttgtcaaaatcccgacttaaatcctaaaatccaggattttgcgactttcttctccttcaacgactcaaatccataatagaatcccaaaacaggca 207  Q
    |||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| |||||||||||| ||||| ||  ||||||||||||| | |||    
T  8442 cattgttgtcaaaatccctacttaaatcctaaaatccacgattttgcgactttcttcaccttcaacgacttaaatctattgtagaatcccaaaataagca 8541  T
Q  208 aaat 211  Q
    ||||    
T  8542 aaat 8545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0186; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 210 - 288
Target Start/End: Original strand, 8601 - 8676
Alignment:
Q  210 atatatcatttataacatatatttagtattannnnnnncttcgtaaaatccatcaattttgattgcgattttacgattt 288  Q
    ||||| |||||||| ||||||||||||||||        || |||||||||||| ||||||||||||||||||| ||||    
T  8601 atataccatttataccatatatttagtattattttt---ttggtaaaatccatcgattttgattgcgattttacaattt 8676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0186; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 252 - 285
Target Start/End: Original strand, 8705 - 8738
Alignment:
Q  252 gtaaaatccatcaattttgattgcgattttacga 285  Q
    ||||||||| ||||||||||||||||||||||||    
T  8705 gtaaaatccttcaattttgattgcgattttacga 8738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 68; Significance: 3e-30; HSPs: 38)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 108 - 211
Target Start/End: Complemental strand, 23863451 - 23863348
Alignment:
Q  108 cattgttgtcaaaatcccgacttaaatcctaaaatccaggattttgcgactttcttctccttcaacgactcaaatccataatagaatcccaaaacaggca 207  Q
    ||||||||||||||||||||||||||| |||||||| || ||||||||||||||||| | |||||||||| ||||||||| ||||||| ||||| |||||    
T  23863451 cattgttgtcaaaatcccgacttaaattctaaaatcgagaattttgcgactttcttcactttcaacgactgaaatccatagtagaatctcaaaataggca 23863352  T
Q  208 aaat 211  Q
    ||||    
T  23863351 aaat 23863348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 108 - 195
Target Start/End: Complemental strand, 31238107 - 31238020
Alignment:
Q  108 cattgttgtcaaaatcccgacttaaatcctaaaatccaggattttgcgactttcttctccttcaacgactcaaatccataatagaatc 195  Q
    |||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| ||||||||||||||||| |||| |||||||    
T  31238107 cattgttgtcaaaatcccgacttaaatcctaaaatctaggattttgccactttcttcaccttcaacgactcaaattcatagtagaatc 31238020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 108 - 211
Target Start/End: Original strand, 30432418 - 30432521
Alignment:
Q  108 cattgttgtcaaaatcccgacttaaatcctaaaatccaggattttgcgactttcttctccttcaacgactcaaatccataatagaatcccaaaacaggca 207  Q
    ||||||||||||||||| || |||||| |||||||| |||||||| ||||||||||| |||||||||||||||||||||| ||||||| ||||| || ||    
T  30432418 cattgttgtcaaaatcctgatttaaattctaaaatctaggatttttcgactttcttcgccttcaacgactcaaatccatagtagaatctcaaaatagaca 30432517  T
Q  208 aaat 211  Q
    ||||    
T  30432518 aaat 30432521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 108 - 211
Target Start/End: Original strand, 36429847 - 36429950
Alignment:
Q  108 cattgttgtcaaaatcccgacttaaatcctaaaatccaggattttgcgactttcttctccttcaacgactcaaatccataatagaatcccaaaacaggca 207  Q
    |||||||||||||||||| |||||||||||| |||| |||||||||||||||||||| ||||||||||||||| | ||||  |||||| ||||| |||||    
T  36429847 cattgttgtcaaaatcccaacttaaatcctataatctaggattttgcgactttcttcaccttcaacgactcaagttcataggagaatctcaaaataggca 36429946  T
Q  208 aaat 211  Q
    ||||    
T  36429947 aaat 36429950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 108 - 211
Target Start/End: Original strand, 20063713 - 20063816
Alignment:
Q  108 cattgttgtcaaaatcccgacttaaatcctaaaatccaggattttgcgactttcttctccttcaacgactcaaatccataatagaatcccaaaacaggca 207  Q
    |||||||||||||||||||||||||| ||||||||||| | |||||||  |||||||  |||||| |||| ||||||||| ||||||||||||| |||||    
T  20063713 cattgttgtcaaaatcccgacttaaaacctaaaatccaaggttttgcggttttcttcatcttcaaggacttaaatccatagtagaatcccaaaataggca 20063812  T
Q  208 aaat 211  Q
    ||||    
T  20063813 aaat 20063816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 110 - 211
Target Start/End: Complemental strand, 35566082 - 35565981
Alignment:
Q  110 ttgttgtcaaaatcccgacttaaatcctaaaatccaggattttgcgactttcttctccttcaacgactcaaatccataatagaatcccaaaacaggcaaa 209  Q
    |||||||||||||||| |||||||||  ||||| |||||||||||||||||||||   ||||| |||||||||||||  ||||||||||||| |||||||    
T  35566082 ttgttgtcaaaatcccaacttaaatcacaaaattcaggattttgcgactttcttcatattcaatgactcaaatccatggtagaatcccaaaataggcaaa 35565983  T
Q  210 at 211  Q
    ||    
T  35565982 at 35565981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 108 - 196
Target Start/End: Original strand, 1404782 - 1404870
Alignment:
Q  108 cattgttgtcaaaatcccgacttaaatcctaaaatccaggattttgcgactttcttctccttcaacgactcaaatccataatagaatcc 196  Q
    ||||||||||||||||||||||||||| |||||||  ||||||||| |||||||||| |||||||||||| ||||||||  ||||||||    
T  1404782 cattgttgtcaaaatcccgacttaaattctaaaatttaggattttgtgactttcttcaccttcaacgacttaaatccattgtagaatcc 1404870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 108 - 210
Target Start/End: Complemental strand, 1690892 - 1690790
Alignment:
Q  108 cattgttgtcaaaatcccgacttaaatcctaaaatccaggattttgcgactttcttctccttcaacgactcaaatccataatagaatcccaaaacaggca 207  Q
    ||||||||||||||  |||||||||||| ||||||  ||||||||| |||||||||| ||||| |||||||| ||||||| || |||||||||| |||||    
T  1690892 cattgttgtcaaaactccgacttaaatcttaaaatttaggattttgtgactttcttcaccttcgacgactcagatccatagtaaaatcccaaaataggca 1690793  T
Q  208 aaa 210  Q
    |||    
T  1690792 aaa 1690790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 106 - 211
Target Start/End: Complemental strand, 15588981 - 15588877
Alignment:
Q  106 agcattgttgtcaaaatcccgacttaaatcctaaaatccaggattttgcgactttcttctccttcaacgactcaaatccataatagaatcccaaaacagg 205  Q
    ||||||| ||||||||||||||||||| || |||||| |||||||||||| |||||||| |||||||| |||||||| |||| ||||||| ||||| ||     
T  15588981 agcattgctgtcaaaatcccgacttaa-tcttaaaattcaggattttgcgtctttcttcaccttcaacaactcaaatacatagtagaatctcaaaataga 15588883  T
Q  206 caaaat 211  Q
    ||||||    
T  15588882 caaaat 15588877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 109 - 196
Target Start/End: Original strand, 19491855 - 19491944
Alignment:
Q  109 attgttgtcaaaatcccgacttaaatccta--aaatccaggattttgcgactttcttctccttcaacgactcaaatccataatagaatcc 196  Q
    ||||||||||||||| ||| ||||||||||  ||||| ||||||||||||||||||||  ||| |||||||||||||||||  |||||||    
T  19491855 attgttgtcaaaatctcgaattaaatcctataaaatctaggattttgcgactttcttcatcttaaacgactcaaatccatagcagaatcc 19491944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 111 - 211
Target Start/End: Complemental strand, 25539353 - 25539253
Alignment:
Q  111 tgttgtcaaaatcccgacttaaatcctaaaatccaggattttgcgactttcttctccttcaacgactcaaatccataatagaatcccaaaacaggcaaaa 210  Q
    |||||| |||||||||| |||||||||||||| || || ||||| | ||||||| |||||||||||| |||||||||  ||||||| |||| | ||||||    
T  25539353 tgttgttaaaatcccgatttaaatcctaaaattcaagaatttgcaattttcttcaccttcaacgacttaaatccataggagaatccgaaaataagcaaaa 25539254  T
Q  211 t 211  Q
    |    
T  25539253 t 25539253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 108 - 211
Target Start/End: Original strand, 17995054 - 17995157
Alignment:
Q  108 cattgttgtcaaaatcccgacttaaatcctaaaatccaggattttgcgactttcttctccttcaacgactcaaatccataatagaatcccaaaacaggca 207  Q
    ||||||||| ||||| |||||||||| |||||||||||| ||||||||| ||| ||| || |||||||||||||| | ||  | ||| |||||| |||||    
T  17995054 cattgttgttaaaattccgacttaaaacctaaaatccagaattttgcgattttattcaccatcaacgactcaaattcgtagcataattccaaaataggca 17995153  T
Q  208 aaat 211  Q
    ||||    
T  17995154 aaat 17995157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 108 - 196
Target Start/End: Complemental strand, 27750282 - 27750194
Alignment:
Q  108 cattgttgtcaaaatcccgacttaaatcctaaaatccaggattttgcgactttcttctccttcaacgactcaaatccataatagaatcc 196  Q
    |||||||||||||||| |||||||| ||| ||||| || ||||||||||||||  |   ||| |||||||||||||||||| |||||||    
T  27750282 cattgttgtcaaaatcgcgacttaagtcccaaaatacaagattttgcgacttttcttaacttaaacgactcaaatccataacagaatcc 27750194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 111 - 211
Target Start/End: Original strand, 31578007 - 31578106
Alignment:
Q  111 tgttgtcaaaatcccgacttaaatcctaaaatccaggattttgcgactttcttctccttcaacgactcaaatccataatagaatcccaaaacaggcaaaa 210  Q
    ||||||||||||||||||||||||  ||||||  | |||||||||| ||||||| |||||||||| | |||||| || |||||||| |||| | ||||||    
T  31578007 tgttgtcaaaatcccgacttaaatgttaaaatttaagattttgcgattttcttcaccttcaacgatttaaatcc-tagtagaatcctaaaataagcaaaa 31578105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 108 - 211
Target Start/End: Complemental strand, 5395778 - 5395675
Alignment:
Q  108 cattgttgtcaaaatcccgacttaaatcctaaaatccaggattttgcgactttcttctccttcaacgactcaaatccataatagaatcccaaaacaggca 207  Q
    |||||||||||||||   ||| |||||| ||||||  |||||||||||||||| |||  ||| || ||||||||||||||  |||||| ||||| |||||    
T  5395778 cattgttgtcaaaattttgacctaaatcataaaatataggattttgcgactttattcatcttaaatgactcaaatccatagcagaatctcaaaataggca 5395679  T
Q  208 aaat 211  Q
    ||||    
T  5395678 aaat 5395675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 145 - 211
Target Start/End: Original strand, 31023259 - 31023325
Alignment:
Q  145 aggattttgcgactttcttctccttcaacgactcaaatccataatagaatcccaaaacaggcaaaat 211  Q
    |||||||||||||||| ||| | ||||||||||||||| |||| |||||||| |||| |||||||||    
T  31023259 aggattttgcgactttattcactttcaacgactcaaattcatagtagaatcctaaaataggcaaaat 31023325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 145 - 211
Target Start/End: Original strand, 34841592 - 34841658
Alignment:
Q  145 aggattttgcgactttcttctccttcaacgactcaaatccataatagaatcccaaaacaggcaaaat 211  Q
    |||||| ||||||||| ||| ||||||||||||||||||||||  ||||| |||||||| |||||||    
T  34841592 aggattctgcgactttattcaccttcaacgactcaaatccataggagaataccaaaacatgcaaaat 34841658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 215 - 288
Target Start/End: Complemental strand, 13502640 - 13502567
Alignment:
Q  215 tcatttataacatatatttagtattannnnnnncttcgtaaaatccatcaattttgattgcgattttacgattt 288  Q
    |||||||||||||||||||| |||||        || |||||||||||| ||||||||||||||||||||||||    
T  13502640 tcatttataacatatatttaatattatttttgttttggtaaaatccatcgattttgattgcgattttacgattt 13502567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 109 - 201
Target Start/End: Original strand, 16766710 - 16766802
Alignment:
Q  109 attgttgtcaaaatcccgacttaaatcctaaaatccaggattttgcgactttcttctccttcaacgactcaaatccataatagaatcccaaaa 201  Q
    ||||||||||||||   |||||||||| ||||||  |||||||| ||| ||| ||| |||||||||| |||||||||||  ||||||| ||||    
T  16766710 attgttgtcaaaattttgacttaaatcttaaaatttaggattttacgattttattcaccttcaacgaatcaaatccatagcagaatcctaaaa 16766802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 108 - 160
Target Start/End: Original strand, 19245152 - 19245204
Alignment:
Q  108 cattgttgtcaaaatcccgacttaaatcctaaaatccaggattttgcgacttt 160  Q
    |||||||||||||||||||||||||||  |||||| ||||||||| |||||||    
T  19245152 cattgttgtcaaaatcccgacttaaattttaaaattcaggattttacgacttt 19245204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 108 - 211
Target Start/End: Original strand, 15266081 - 15266184
Alignment:
Q  108 cattgttgtcaaaatcccgacttaaatcctaaaatccaggattttgcgactttcttctccttcaacgactcaaatccataatagaatcccaaaacaggca 207  Q
    ||||||||||||||||  || |||||||||||||| ||||||||||  ||||| |||  |||||| || ||||||||||  || ||| |||||| ||| |    
T  15266081 cattgttgtcaaaatcatgatttaaatcctaaaattcaggattttgtaactttattcatcttcaatgattcaaatccatgttataattccaaaataggaa 15266180  T
Q  208 aaat 211  Q
    ||||    
T  15266181 aaat 15266184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 109 - 153
Target Start/End: Original strand, 29660893 - 29660937
Alignment:
Q  109 attgttgtcaaaatcccgacttaaatcctaaaatccaggattttg 153  Q
    |||||||||||||  |||||||||||||||||||| |||||||||    
T  29660893 attgttgtcaaaaatccgacttaaatcctaaaatctaggattttg 29660937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 217 - 289
Target Start/End: Original strand, 19519538 - 19519610
Alignment:
Q  217 atttataacatatatttagtattannnnnnncttcgtaaaatccatcaattttgattgcgattttacgatttt 289  Q
    ||||||||||||||||||| ||||        || ||| |||| |||||||||||||||||||||||||||||    
T  19519538 atttataacatatatttagcattattttggtttttgtagaatctatcaattttgattgcgattttacgatttt 19519610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 106 - 160
Target Start/End: Original strand, 974188 - 974242
Alignment:
Q  106 agcattgttgtcaaaatcccgacttaaatcctaaaatccaggattttgcgacttt 160  Q
    ||||||||| |||||| | |||||||| ||||||||||| || ||||||||||||    
T  974188 agcattgttatcaaaaacgcgacttaagtcctaaaatcctggtttttgcgacttt 974242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 110 - 188
Target Start/End: Complemental strand, 15516687 - 15516609
Alignment:
Q  110 ttgttgtcaaaatcccgacttaaatcctaaaatccaggattttgcgactttcttctccttcaacgactcaaatccataa 188  Q
    ||||||| |||||| | ||||||||| ||| || ||| ||||||||||||| ||| |||||||| | |||||| |||||    
T  15516687 ttgttgttaaaatcgcaacttaaatcttaatattcagcattttgcgactttattcaccttcaacaattcaaattcataa 15516609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 108 - 142
Target Start/End: Original strand, 15627654 - 15627688
Alignment:
Q  108 cattgttgtcaaaatcccgacttaaatcctaaaat 142  Q
    |||| ||||||||||||||||||||||||||||||    
T  15627654 cattattgtcaaaatcccgacttaaatcctaaaat 15627688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 252 - 290
Target Start/End: Original strand, 16767049 - 16767087
Alignment:
Q  252 gtaaaatccatcaattttgattgcgattttacgattttt 290  Q
    ||||||||| ||||||||||||||||||||| |||||||    
T  16767049 gtaaaatccttcaattttgattgcgattttatgattttt 16767087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 252 - 290
Target Start/End: Original strand, 16767186 - 16767224
Alignment:
Q  252 gtaaaatccatcaattttgattgcgattttacgattttt 290  Q
    ||||||||| ||||||||||||||||||||| |||||||    
T  16767186 gtaaaatccttcaattttgattgcgattttatgattttt 16767224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 109 - 187
Target Start/End: Complemental strand, 19257647 - 19257569
Alignment:
Q  109 attgttgtcaaaatcccgacttaaatcctaaaatccaggattttgcgactttcttctccttcaacgactcaaatccata 187  Q
    |||||| |||||||| |||||||| |||||||||||| ||||||  ||||||  |   |||||||||||||||| ||||    
T  19257647 attgttatcaaaatcgcgacttaagtcctaaaatccaagattttatgactttacttgacttcaacgactcaaattcata 19257569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 114 - 181
Target Start/End: Original strand, 27406782 - 27406851
Alignment:
Q  114 tgtcaaaatcccgacttaaatcctaaaa--tccaggattttgcgactttcttctccttcaacgactcaaa 181  Q
    |||||||||||||| |||||| ||||||  || |||||||||||| ||| ||  ||||||||||||||||    
T  27406782 tgtcaaaatcccgaattaaattctaaaatctctaggattttgcgattttttttaccttcaacgactcaaa 27406851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 254 - 288
Target Start/End: Complemental strand, 31238008 - 31237974
Alignment:
Q  254 aaaatccatcaattttgattgcgattttacgattt 288  Q
    |||||||||| ||||||||||||||||||||||||    
T  31238008 aaaatccatcgattttgattgcgattttacgattt 31237974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 254 - 288
Target Start/End: Original strand, 31578102 - 31578136
Alignment:
Q  254 aaaatccatcaattttgattgcgattttacgattt 288  Q
    |||||||||||||||||||||| ||||||||||||    
T  31578102 aaaatccatcaattttgattgcaattttacgattt 31578136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 211
Target Start/End: Complemental strand, 13503162 - 13503069
Alignment:
Q  119 aaatcccgacttaaatcctaaaa-tccaggattttgcgactttcttctccttcaacgactcaaatccataatagaatcccaaaacaggcaaaat 211  Q
    ||||| ||||||||||| ||||| || ||||||||||||  || ||| | ||||||| ||||||||||||| | ||| | |||| |||||||||    
T  13503162 aaatctcgacttaaatcttaaaaatctaggattttgcgatcttattcactttcaacggctcaaatccataacaaaattctaaaataggcaaaat 13503069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 252 - 285
Target Start/End: Complemental strand, 20034087 - 20034054
Alignment:
Q  252 gtaaaatccatcaattttgattgcgattttacga 285  Q
    ||||||||| ||||||||||||||||||||||||    
T  20034087 gtaaaatccttcaattttgattgcgattttacga 20034054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 288
Target Start/End: Original strand, 27406993 - 27407026
Alignment:
Q  255 aaatccatcaattttgattgcgattttacgattt 288  Q
    |||||||||||||||||||||||||||| |||||    
T  27406993 aaatccatcaattttgattgcgattttatgattt 27407026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 289
Target Start/End: Original strand, 34841784 - 34841817
Alignment:
Q  256 aatccatcaattttgattgcgattttacgatttt 289  Q
    |||||||| |||||||||||||||||||||||||    
T  34841784 aatccatcgattttgattgcgattttacgatttt 34841817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 252 - 292
Target Start/End: Original strand, 19245853 - 19245893
Alignment:
Q  252 gtaaaatccatcaattttgattgcgattttacgatttttga 292  Q
    ||||||||| |  ||||||||||||||||||||||||||||    
T  19245853 gtaaaatccttagattttgattgcgattttacgatttttga 19245893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 252 - 288
Target Start/End: Original strand, 30433014 - 30433050
Alignment:
Q  252 gtaaaatccatcaattttgattgcgattttacgattt 288  Q
    |||||||||||| ||||||||||||||||||| ||||    
T  30433014 gtaaaatccatctattttgattgcgattttacaattt 30433050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 106 - 201
Target Start/End: Complemental strand, 48920 - 48825
Alignment:
Q  106 agcattgttgtcaaaatcccgacttaaatcctaaaatccaggattttgcgactttcttctccttcaacgactcaaatccataatagaatcccaaaa 201  Q
    ||||||||||| ||||| |||||||||||||||||||| || ||||||| ||||| ||| ||||||||||||||||||||||  ||||||||||||    
T  48920 agcattgttgtgaaaattccgacttaaatcctaaaatctagaattttgcaactttattcaccttcaacgactcaaatccatatgagaatcccaaaa 48825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 149 - 211
Target Start/End: Complemental strand, 61472 - 61410
Alignment:
Q  149 ttttgcgactttcttctccttcaacgactcaaatccataatagaatcccaaaacaggcaaaat 211  Q
    |||||||||||| ||| |||||||||  |||||||||||  |||||||||||| | |||||||    
T  61472 ttttgcgactttattcgccttcaacggttcaaatccatatgagaatcccaaaataagcaaaat 61410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0510 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: scaffold0510
Description:

Target: scaffold0510; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 108 - 187
Target Start/End: Complemental strand, 231 - 152
Alignment:
Q  108 cattgttgtcaaaatcccgacttaaatcctaaaatccaggattttgcgactttcttctccttcaacgactcaaatccata 187  Q
    ||||||||  || |||||||||||||||||||||| ||||||||||||||||||||| | ||||||||||||||||||||    
T  231 cattgttgataagatcccgacttaaatcctaaaatgcaggattttgcgactttcttcacgttcaacgactcaaatccata 152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0417 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: scaffold0417
Description:

Target: scaffold0417; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 108 - 211
Target Start/End: Complemental strand, 7585 - 7482
Alignment:
Q  108 cattgttgtcaaaatcccgacttaaatcctaaaatccaggattttgcgactttcttctccttcaacgactcaaatccataatagaatcccaaaacaggca 207  Q
    ||||||||| | ||||||||||||||| ||||||| ||||||||||||||||||||  ||||||||||   ||||||||| |||||||| |||| |||||    
T  7585 cattgttgttagaatcccgacttaaattctaaaattcaggattttgcgactttctttaccttcaacgaacaaaatccatagtagaatcctaaaataggca 7486  T
Q  208 aaat 211  Q
    ||||    
T  7485 aaat 7482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0042 (Bit Score: 49; Significance: 6e-19; HSPs: 3)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 108 - 187
Target Start/End: Complemental strand, 93834 - 93757
Alignment:
Q  108 cattgttgtcaaaatcccgacttaaatcctaaaatccaggattttgcgactttcttctccttcaacgactcaaatccata 187  Q
    ||||||||||||||||||||||||||||||||||||||| |||||  || ||||||| || ||||| |||||||||||||    
T  93834 cattgttgtcaaaatcccgacttaaatcctaaaatccagaatttt--gattttcttcaccctcaacaactcaaatccata 93757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0042; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 252 - 288
Target Start/End: Complemental strand, 93635 - 93599
Alignment:
Q  252 gtaaaatccatcaattttgattgcgattttacgattt 288  Q
    |||||||||||| ||||||||||||||||||||||||    
T  93635 gtaaaatccatcgattttgattgcgattttacgattt 93599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0042; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 288
Target Start/End: Complemental strand, 93736 - 93703
Alignment:
Q  255 aaatccatcaattttgattgcgattttacgattt 288  Q
    ||||||||| ||||||||||||||||||||||||    
T  93736 aaatccatcgattttgattgcgattttacgattt 93703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 107 - 187
Target Start/End: Complemental strand, 37297 - 37217
Alignment:
Q  107 gcattgttgtcaaaatcccgacttaaatcctaaaatccaggattttgcgactttcttctccttcaacgactcaaatccata 187  Q
    |||||||||||||||| |||||||||||  |||||| ||| ||||||| | ||| ||| |||||||| |||||||||||||    
T  37297 gcattgttgtcaaaatgccgacttaaattttaaaattcagaattttgcaattttattcaccttcaacaactcaaatccata 37217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0603 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0603
Description:

Target: scaffold0603; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 108 - 187
Target Start/End: Complemental strand, 9150 - 9071
Alignment:
Q  108 cattgttgtcaaaatcccgacttaaatcctaaaatccaggattttgcgactttcttctccttcaacgactcaaatccata 187  Q
    ||||||||||||||||| || ||||||  ||||||  ||||||||| || ||| ||| ||||||||||||||||||||||    
T  9150 cattgttgtcaaaatcctgatttaaattttaaaatgtaggattttgtgattttattcaccttcaacgactcaaatccata 9071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0115 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0115
Description:

Target: scaffold0115; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 109 - 182
Target Start/End: Complemental strand, 35188 - 35115
Alignment:
Q  109 attgttgtcaaaatcccgacttaaatcctaaaatccaggattttgcgactttcttctccttcaacgactcaaat 182  Q
    ||||||||||||||| |||||||||| ||||||| ||  ||||||  ||||| ||| |||| ||||||||||||    
T  35188 attgttgtcaaaatctcgacttaaattctaaaattcataattttggaactttattcacctttaacgactcaaat 35115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0259 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0259
Description:

Target: scaffold0259; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 292
Target Start/End: Original strand, 18548 - 18623
Alignment:
Q  217 atttataacatatatttagtattannnnnnncttcgtaaaatccatcaattttgattgcgattttacgatttttga 292  Q
    ||||||||||||||||||||||||        ||  || |||||||| ||||||||||| ||||||||||||||||    
T  18548 atttataacatatatttagtattatttttgttttgatagaatccatctattttgattgcaattttacgatttttga 18623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 252 - 288
Target Start/End: Complemental strand, 56355 - 56319
Alignment:
Q  252 gtaaaatccatcaattttgattgcgattttacgattt 288  Q
    |||||||||||| ||||||||||||||||||| ||||    
T  56355 gtaaaatccatcgattttgattgcgattttacaattt 56319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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