View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11380_high_4 (Length: 280)

Name: NF11380_high_4
Description: NF11380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11380_high_4
NF11380_high_4
[»] chr3 (17 HSPs)
chr3 (1-238)||(5155861-5156093)
chr3 (1-183)||(5159940-5160123)
chr3 (24-124)||(46479515-46479615)
chr3 (25-117)||(46497677-46497769)
chr3 (28-127)||(46526729-46526830)
chr3 (2-124)||(51942855-51942977)
chr3 (17-124)||(47397615-47397722)
chr3 (13-101)||(45884024-45884112)
chr3 (35-123)||(46544183-46544271)
chr3 (24-97)||(46473681-46473754)
chr3 (1-141)||(46490417-46490557)
chr3 (28-125)||(45902676-45902775)
chr3 (37-107)||(46549300-46549370)
chr3 (47-110)||(4581745-4581808)
chr3 (41-118)||(46538714-46538792)
chr3 (50-85)||(4614165-4614200)
chr3 (40-101)||(16025229-16025290)
[»] chr4 (4 HSPs)
chr4 (24-238)||(35162049-35162264)
chr4 (37-225)||(35155038-35155230)
chr4 (36-101)||(15555760-15555825)
chr4 (59-116)||(28286744-28286801)
[»] chr8 (3 HSPs)
chr8 (1-124)||(9692995-9693117)
chr8 (25-226)||(9675997-9676199)
chr8 (47-117)||(21464513-21464583)
[»] chr2 (3 HSPs)
chr2 (8-118)||(20358860-20358970)
chr2 (24-118)||(20169332-20169426)
chr2 (8-108)||(20144358-20144458)
[»] chr7 (5 HSPs)
chr7 (1-102)||(17708020-17708121)
chr7 (27-102)||(17717844-17717919)
chr7 (1-83)||(16721916-16721998)
chr7 (1-83)||(17698930-17699012)
chr7 (1-101)||(17735675-17735775)


Alignment Details
Target: chr3 (Bit Score: 196; Significance: 1e-107; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 5156093 - 5155861
Alignment:
Q  1 ggttaagctatcaactgatcttggaggaagaagttctttaataaggccatttgtctctttttcagcccataaattcccttctttagtcacttcaacagcc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5156093 ggttaagctatcaactgatcttggaggaagaagttctttaataaggccatttgtctctttttcagcccataaattcccttctttagtcacttcaacagcc 5155994  T
Q  101 tttaaaaccaaatcaaattt-aaaatcaactatagaaatagaacaaataaattctttttggaagtatttcaatagaacaaattaacattttgttagtcta 199  Q
    |||||||||||||||||||| |||||| |||      ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  5155993 tttaaaaccaaatcaaatttaaaaatccact------atagaacaaataaattctttttggaagtatttcaatagaacaaattaactttttgttagtcta 5155900  T
Q  200 attttcatatattatggttctaaattaatcggatgctag 238  Q
    ||||||||||||||||||||||||||||| |||||||||    
T  5155899 attttcatatattatggttctaaattaattggatgctag 5155861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 1 - 183
Target Start/End: Complemental strand, 5160123 - 5159940
Alignment:
Q  1 ggttaagctatcaactgatcttggaggaagaagttctttaataaggccatttgtctctttttcagcccataaattcccttctttagtcacttcaacagcc 100  Q
    |||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||    
T  5160123 ggttaacctatcaactgatcttagaggaagaagttctttaataaggccatttgtctctttttcagcccataaattcacttctttagtcacttcaatagcc 5160024  T
Q  101 tttaaaaccaaatcaaattt-aaaatcaactatagaaatagaacaaataaattctttttggaagtatttcaatagaacaaatta 183  Q
    || ||||| | ||||||||| |||||||| |||  |||||||||||||| |||||||||||||||| |||||||||| ||||||    
T  5160023 ttcaaaacaatatcaaatttaaaaatcaattatgcaaatagaacaaatagattctttttggaagtaattcaatagaagaaatta 5159940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 24 - 124
Target Start/End: Complemental strand, 46479615 - 46479515
Alignment:
Q  24 gaggaagaagttctttaataaggccatttgtctctttttcagcccataaattcccttctttagtcacttcaacagcctttaaaaccaaatcaaatttaaa 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| || ||||||||||||||||||||||||| ||||||||||||    
T  46479615 gaggaagaagttctttaataaggccatttgtctctttttcagcccatgaattcacttcattggtcacttcaacagcctttaaaaccatatcaaatttaaa 46479516  T
Q  124 a 124  Q
    |    
T  46479515 a 46479515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 25 - 117
Target Start/End: Complemental strand, 46497769 - 46497677
Alignment:
Q  25 aggaagaagttctttaataaggccatttgtctctttttcagcccataaattcccttctttagtcacttcaacagcctttaaaaccaaatcaaa 117  Q
    ||||||||||||||||||||| |||||||||||| ||||||||||||||||| |||| ||  |||||||||||||||||||||||| ||||||    
T  46497769 aggaagaagttctttaataagaccatttgtctctctttcagcccataaattcacttcattgttcacttcaacagcctttaaaaccatatcaaa 46497677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 28 - 127
Target Start/End: Original strand, 46526729 - 46526830
Alignment:
Q  28 aagaagttctttaataaggccatttgtctctttttcagcccataaattcccttctttagtcacttcaacagcctt--taaaaccaaatcaaatttaaaat 125  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||  ||||| || ||||||| ||||||    
T  46526729 aagaagttctctaataaggccatttgtctctttttcagcccataaattcacttctttaatcacttcaacaacctttataaaatcatatcaaatataaaat 46526828  T
Q  126 ca 127  Q
    ||    
T  46526829 ca 46526830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 2 - 124
Target Start/End: Complemental strand, 51942977 - 51942855
Alignment:
Q  2 gttaagctatcaactgatcttggaggaagaagttctttaataaggccatttgtctctttttcagcccataaattcccttctttagtcacttcaacagcct 101  Q
    ||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| ||||||  ||| |||| |||  ||||||   |||||    
T  51942977 gttaagctatcaactgatcctggaggaataagttctttaataaggccatttgtctctttttcaacccatatgttcacttccttacgcacttctggagcct 51942878  T
Q  102 ttaaaaccaaatcaaatttaaaa 124  Q
      ||||||| |||||||||||||    
T  51942877 aaaaaaccatatcaaatttaaaa 51942855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 17 - 124
Target Start/End: Original strand, 47397615 - 47397722
Alignment:
Q  17 gatcttggaggaagaagttctttaataaggccatttgtctctttttcagcccataaattcccttctttagtcacttcaacagcctttaaaaccaaatcaa 116  Q
    ||||||||||||| || |||||||||||  ||||||||||| ||||  |||||||||||  ||||||||| ||||||| ||||||||||| ||| |||||    
T  47397615 gatcttggaggaaaaatttctttaataaaaccatttgtctcatttttggcccataaatttacttctttagccacttcatcagcctttaaacccatatcaa 47397714  T
Q  117 atttaaaa 124  Q
    ||||||||    
T  47397715 atttaaaa 47397722  T

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Target: chr3; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 13 - 101
Target Start/End: Original strand, 45884024 - 45884112
Alignment:
Q  13 aactgatcttggaggaagaagttctttaataaggccatttgtctctttttcagcccataaattcccttctttagtcacttcaacagcct 101  Q
    |||||| | ||||| ||||| |||||||||||| |||||||||||||||||||||||||||||| | || || ||||||||||| ||||    
T  45884024 aactgaccctggagaaagaatttctttaataagaccatttgtctctttttcagcccataaattcacgtcattggtcacttcaaccgcct 45884112  T

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Target: chr3; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 35 - 123
Target Start/End: Complemental strand, 46544271 - 46544183
Alignment:
Q  35 tctttaataaggccatttgtctctttttcagcccataaattcccttctttagtcacttcaacagcctttaaaaccaaatcaaatttaaa 123  Q
    ||||| ||||| |||||||||||||||||||||||||||||| |||||||  || |||||| |||||||||||| | ||||||| ||||    
T  46544271 tcttttataagaccatttgtctctttttcagcccataaattcacttcttttctcccttcaaaagcctttaaaacaacatcaaatataaa 46544183  T

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Target: chr3; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 24 - 97
Target Start/End: Complemental strand, 46473754 - 46473681
Alignment:
Q  24 gaggaagaagttctttaataaggccatttgtctctttttcagcccataaattcccttctttagtcacttcaaca 97  Q
    ||||||||| |||||||||||| |||||||||||||||||||||||||  ||| |||| || ||||||||||||    
T  46473754 gaggaagaatttctttaataagaccatttgtctctttttcagcccatatgttcacttcattggtcacttcaaca 46473681  T

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Target: chr3; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 46490557 - 46490417
Alignment:
Q  1 ggttaagctatcaactgatcttggaggaagaagttctttaataaggccatttgtctctttttcagcccataaattcccttctttagtcacttcaacagcc 100  Q
    ||||||||||| ||| || || | ||||||||||| ||||||||  |||||||||| |||| |||||||||||||| ||||||| | |||||||   |||    
T  46490557 ggttaagctattaaccgacctggaaggaagaagttgtttaataataccatttgtct-ttttgcagcccataaattcacttctttggccacttcacttgcc 46490459  T
Q  101 tttaaaaccaaatc-aaatttaaaatcaactatagaaataga 141  Q
    |||||||||| ||| ||||| |||||||| |||  |||||||    
T  46490458 tttaaaaccatatcaaaattcaaaatcaattattcaaataga 46490417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 28 - 125
Target Start/End: Complemental strand, 45902775 - 45902676
Alignment:
Q  28 aagaagttctttaataaggccatttgtctctttttcagcccataaattcccttctttagtcacttcaacagcctt--taaaaccaaatcaaatttaaaat 125  Q
    ||||| ||| ||||||||||||||||||||||||||||||||||||||| ||| |||| | |||| | || ||||  |||||||| ||||||| ||||||    
T  45902775 aagaaattcattaataaggccatttgtctctttttcagcccataaattcacttttttaattacttaatcaacctttataaaaccatatcaaatataaaat 45902676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 37 - 107
Target Start/End: Original strand, 46549300 - 46549370
Alignment:
Q  37 tttaataaggccatttgtctctttttcagcccataaattcccttctttagtcacttcaacagcctttaaaa 107  Q
    ||||||||| |||||||||||||||||||||||||||||| ||||||| | |||||||   ||||||||||    
T  46549300 tttaataagaccatttgtctctttttcagcccataaattcacttctttggccacttcacttgcctttaaaa 46549370  T

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Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 47 - 110
Target Start/End: Original strand, 4581745 - 4581808
Alignment:
Q  47 ccatttgtctctttttcagcccataaattcccttctttagtcacttcaacagcctttaaaacca 110  Q
    |||||||||||||||||||||||||||||| |||||| |  ||||||   ||||||||||||||    
T  4581745 ccatttgtctctttttcagcccataaattcacttcttgaagcacttcggtagcctttaaaacca 4581808  T

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Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 41 - 118
Target Start/End: Complemental strand, 46538792 - 46538714
Alignment:
Q  41 ataaggccatttgtctcttttt-cagcccataaattcccttctttagtcacttcaacagcctttaaaaccaaatcaaat 118  Q
    |||||||||||||||| ||||| ||||||| |||||| |||||||  |||||||||  ||||||||||| | |||||||    
T  46538792 ataaggccatttgtcttttttttcagcccacaaattcacttcttttctcacttcaagtgcctttaaaacaatatcaaat 46538714  T

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Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 50 - 85
Target Start/End: Original strand, 4614165 - 4614200
Alignment:
Q  50 tttgtctctttttcagcccataaattcccttcttta 85  Q
    ||||||||||||||||||||||||||| ||||||||    
T  4614165 tttgtctctttttcagcccataaattcacttcttta 4614200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 101
Target Start/End: Complemental strand, 16025290 - 16025229
Alignment:
Q  40 aataaggccatttgtctctttttcagcccataaattcccttctttagtcacttcaacagcct 101  Q
    |||||| ||||||||||| |||| ||||||||||||| | || || ||||||||||| ||||    
T  16025290 aataagaccatttgtctcctttttagcccataaattcacatcatttgtcacttcaactgcct 16025229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 84; Significance: 6e-40; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 24 - 238
Target Start/End: Complemental strand, 35162264 - 35162049
Alignment:
Q  24 gaggaagaagttctttaataaggccatttgtctctttttcagcccataaattcccttctttagtcacttcaacagcctttaaaaccaaatcaaattta-a 122  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| ||||||||||||||  ||||||||| |    
T  35162264 gaggaagaagttctttaataaggccatttgtttctttttcagcccataaattcacttctttagtcacttcaatagcctttaaaaccatgtcaaatttaca 35162165  T
Q  123 aatcaactatagaaatagaacaaataaattctttttggaagtatttcaatagaacaaattaacattttgttagtctaattttcatatattatggttctaa 222  Q
    |||||   ||  ||||||| ||  | |||||||||    ||||||||||||||| |||| ||| || || ||||||| |||||| |||| | |||  |||    
T  35162164 aatcagtaatgcaaatagatcagttgaattcttttcaccagtatttcaatagaagaaatcaactttctgctagtctagttttcaaatataacggtgttaa 35162065  T
Q  223 attaatcggatgctag 238  Q
    |||| | |||||||||    
T  35162064 attagttggatgctag 35162049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 37 - 225
Target Start/End: Complemental strand, 35155230 - 35155038
Alignment:
Q  37 tttaataaggccatttgtctctttttcagcccataaattcccttctttagtcacttcaacagcctttaaaacca----aatcaaattta-aaatcaacta 131  Q
    |||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| |||||| |||||||    ||||||||||| ||||||  ||    
T  35155230 tttaataaggccatttgtctcttttttagcccataaattcacttctttagtcacttcaatagccttcaaaaccatgtcaatcaaatttataaatcagtta 35155131  T
Q  132 tagaaatagaacaaataaattctttttggaagtatttcaatagaacaaattaacattttgttagtctaattttcatatattatggttctaaatt 225  Q
    | | |||||| ||| | |||||| ||   |||||||||||||||| |||| ||| || || |||||||||||||| | |||| ||| |||||||    
T  35155130 t-gcaatagatcaattgaattctcttcacaagtatttcaatagaagaaatcaactttctgctagtctaattttcacacattacggtgctaaatt 35155038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 36 - 101
Target Start/End: Complemental strand, 15555825 - 15555760
Alignment:
Q  36 ctttaataaggccatttgtctctttttcagcccataaattcccttctttagtcacttcaacagcct 101  Q
    |||||||||||||||||||||| |||||| ||||| ||||  |||| || ||||||||||||||||    
T  15555825 ctttaataaggccatttgtctccttttcaacccatgaattgacttcattggtcacttcaacagcct 15555760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 59 - 116
Target Start/End: Original strand, 28286744 - 28286801
Alignment:
Q  59 ttttcagcccataaattcccttctttagtcacttcaacagcctttaaaaccaaatcaa 116  Q
    |||||||||||||||||  ||||||| |||||||||||| ||||| |||||| |||||    
T  28286744 ttttcagcccataaatttacttcttttgtcacttcaacaacctttgaaaccatatcaa 28286801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 72; Significance: 8e-33; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 1 - 124
Target Start/End: Original strand, 9692995 - 9693117
Alignment:
Q  1 ggttaagctatcaactgatcttggaggaagaagttctttaataaggccatttgtctctttttcagcccataaattcccttctttagtcacttcaacagcc 100  Q
    ||||||||| ||||||||   | ||||||||| ||||||||||||||||| ||||||||||||||||||||||||| ||| |||||||||||||| ||||    
T  9692995 ggttaagctgtcaactgacgcttgaggaagaatttctttaataaggccatatgtctctttttcagcccataaattcacttgtttagtcacttcaatagcc 9693094  T
Q  101 tttaaaaccaaatcaaatttaaaa 124  Q
    ||||||| || |||||||||||||    
T  9693095 tttaaaa-catatcaaatttaaaa 9693117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 25 - 226
Target Start/End: Original strand, 9675997 - 9676199
Alignment:
Q  25 aggaagaagttctttaataaggccatttgtctctttttcagcccataaattcccttctttagtcacttcaacagcctttaaaaccaaatcaaattt-aaa 123  Q
    |||||||| ||||||||||||||| | ||| ||||||||||||||||||||| | |||||||||||||||| |||||| || |  | ||||||||| |||    
T  9675997 aggaagaatttctttaataaggccgtatgtttctttttcagcccataaattcacctctttagtcacttcaatagccttaaataaaatatcaaatttaaaa 9676096  T
Q  124 atcaactatagaaatagaacaaataaattctttttggaagtatttcaatagaacaaattaacattttgttagtctaattttcatatattatggttctaaa 223  Q
    ||||  |||  ||||||| ||  | |||||||||   ||||||||| ||| || | |||||| || |  |||||||||||||| |||||  ||| |||||    
T  9676097 atcagttattcaaatagatcagttgaattcttttcacaagtatttcgataaaagagattaactttctcgtagtctaattttcacatattgcggtgctaaa 9676196  T
Q  224 tta 226  Q
    |||    
T  9676197 tta 9676199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 47 - 117
Target Start/End: Original strand, 21464513 - 21464583
Alignment:
Q  47 ccatttgtctctttttcagcccataaattcccttctttagtcacttcaacagcctttaaaaccaaatcaaa 117  Q
    |||||||||||||||||||||||||||||  ||||||  ||| |||| | |||||||||||| | ||||||    
T  21464513 ccatttgtctctttttcagcccataaatttgcttcttctgtcgcttcgagagcctttaaaacaatatcaaa 21464583  T

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Target: chr2 (Bit Score: 63; Significance: 2e-27; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 8 - 118
Target Start/End: Complemental strand, 20358970 - 20358860
Alignment:
Q  8 ctatcaactgatcttggaggaagaagttctttaataaggccatttgtctctttttcagcccataaattcccttctttagtcacttcaacagcctttaaaa 107  Q
    |||||||||| || | |||||||||||||||||||||||||| ||||||||||||||| |||||||||| ||| ||| |||||||||||| |||| ||||    
T  20358970 ctatcaactggtcctcgaggaagaagttctttaataaggccaattgtctctttttcagaccataaattcactttttttgtcacttcaacaaccttcaaaa 20358871  T
Q  108 ccaaatcaaat 118  Q
    ||  |||||||    
T  20358870 ccgcatcaaat 20358860  T

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Target: chr2; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 24 - 118
Target Start/End: Original strand, 20169332 - 20169426
Alignment:
Q  24 gaggaagaagttctttaataaggccatttgtctctttttcagcccataaattcccttctttagtcacttcaacagcctttaaaaccaaatcaaat 118  Q
    |||||||||||||||||||||||||| ||||||||||||| | |||||||||| ||| ||| |||||||||||| |||| ||||||| |||||||    
T  20169332 gaggaagaagttctttaataaggccaattgtctctttttccgaccataaattcactttttttgtcacttcaacaaccttcaaaaccacatcaaat 20169426  T

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Target: chr2; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 8 - 108
Target Start/End: Complemental strand, 20144458 - 20144358
Alignment:
Q  8 ctatcaactgatcttggaggaagaagttctttaataaggccatttgtctctttttcagcccataaattcccttctttagtcacttcaacagcctttaaaa 107  Q
    |||||||||| || | |||||||||||||||||||||||||| ||||||||||||| | ||||| |||| ||| ||| |||||||||||| |||||||||    
T  20144458 ctatcaactggtcctcgaggaagaagttctttaataaggccaattgtctctttttccgaccatagattcactttttttgtcacttcaacaacctttaaaa 20144359  T
Q  108 c 108  Q
    |    
T  20144358 c 20144358  T

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Target: chr7 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 17708121 - 17708020
Alignment:
Q  1 ggttaagctatcaactgatcttggaggaagaagttctttaataaggccatttgtctctttttcagcccataaattcccttctttagtcacttcaacagcc 100  Q
    ||||||||| |||||||| ||  | |||||||| | ||||||||| || |||||||| |||||||||||||||||| ||||||   |||||||| |||||    
T  17708121 ggttaagctgtcaactgacctgtgtggaagaagatttttaataagcccttttgtctccttttcagcccataaattcacttcttctctcacttcatcagcc 17708022  T
Q  101 tt 102  Q
    ||    
T  17708021 tt 17708020  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 27 - 102
Target Start/End: Complemental strand, 17717919 - 17717844
Alignment:
Q  27 gaagaagttctttaataaggccatttgtctctttttcagcccataaattcccttctttagtcacttcaacagcctt 102  Q
    ||||||| | ||||||||| || |||||||| ||||||||||||| |||| |||||||  |||||||| |||||||    
T  17717919 gaagaagatttttaataagcccttttgtctccttttcagcccatacattcacttcttttctcacttcatcagcctt 17717844  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 16721998 - 16721916
Alignment:
Q  1 ggttaagctatcaactgatcttggaggaagaagttctttaataaggccatttgtctctttttcagcccataaattcccttctt 83  Q
    ||||||||| | |||||| |  || |||||||| | ||||||||| || |||||||| ||||||||||| |||||| ||||||    
T  16721998 ggttaagctgttaactgagccaggtggaagaagatttttaataagcccttttgtctccttttcagcccagaaattcacttctt 16721916  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 17699012 - 17698930
Alignment:
Q  1 ggttaagctatcaactgatcttggaggaagaagttctttaataaggccatttgtctctttttcagcccataaattcccttctt 83  Q
    ||||||||| | |||||| |  || |||||||| | ||||||||| || |||||||| ||||||||||| |||||| ||||||    
T  17699012 ggttaagctgttaactgagccaggtggaagaagatttttaataagcccttttgtctccttttcagcccagaaattcacttctt 17698930  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 17735775 - 17735675
Alignment:
Q  1 ggttaagctatcaactgatcttggaggaagaagttctttaataaggccatttgtctctttttcagcccataaattcccttctttagtcacttcaacagcc 100  Q
    ||||||||| |||||||| |   | |||||||| || |||||||  || |||||||| || | ||||||||||||| |||||||  |||||||| |||||    
T  17735775 ggttaagctgtcaactgacccgcgtggaagaagatcattaataaacccctttgtctccttattagcccataaattcacttcttttatcacttcatcagcc 17735676  T
Q  101 t 101  Q
    |    
T  17735675 t 17735675  T

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