View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11380_high_6 (Length: 240)
Name: NF11380_high_6
Description: NF11380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11380_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 52583953 - 52583739
Alignment:
| Q |
1 |
ctggtttatcaatatcagccgcatcaagaaccttaagagcatcccacacctgttattacacnnnnnnntccttagcaaagcaaatcaaaatcacggctac |
100 |
Q |
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| T |
52583953 |
ctggtttatcaatatcagccgcatcaagaaccttaagagcatcccacacctgttattacacaaaaa--tccttagcaaagcaaatcaaaatcacggctac |
52583856 |
T |
|
| Q |
101 |
aaatatatgtgtatatatatttaaaaatatgaatgacctcttggtaggacaatgaatgatgttgagcaatgatggaattcaattttctcttgagtttttc |
200 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
52583855 |
aaatatat------atatatttaaaaatatgaatgacctcttggtaggacaatgaatgatgtggagcaatgatggaattcaattttctcttgagtttttc |
52583762 |
T |
|
| Q |
201 |
accttttaatctgaaatgcttca |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
52583761 |
accttttaatctgaaatgcttca |
52583739 |
T |
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