View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11380_high_8 (Length: 229)

Name: NF11380_high_8
Description: NF11380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11380_high_8
NF11380_high_8
[»] chr2 (5 HSPs)
chr2 (1-210)||(28782831-28783040)
chr2 (4-96)||(28742014-28742106)
chr2 (117-210)||(28699494-28699587)
chr2 (129-210)||(28742139-28742220)
chr2 (45-96)||(28699422-28699473)
[»] chr8 (6 HSPs)
chr8 (45-210)||(10769399-10769564)
chr8 (18-96)||(2034784-2034862)
chr8 (16-78)||(2055874-2055936)
chr8 (45-96)||(2048105-2048156)
chr8 (45-78)||(2059078-2059111)
chr8 (45-77)||(2052018-2052050)
[»] chr4 (1 HSPs)
chr4 (45-96)||(48904896-48904947)


Alignment Details
Target: chr2 (Bit Score: 210; Significance: 1e-115; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 28782831 - 28783040
Alignment:
Q  1 aatcccttttgtattgtagtaggctacatattctgaaatagttatttctttgtatttgggaggattgtcttctgataaaaattcttttataggtccgtat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28782831 aatcccttttgtattgtagtaggctacatattctgaaatagttatttctttgtatttgggaggattgtcttctgataaaaattcttttataggtccgtat 28782930  T
Q  101 tggtttgagaaagagttaagatctgcattgaaaaaacatgcaacagatactctaggacctatgatgtttgccaacactttgtgctccacactcttgaatt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28782931 tggtttgagaaagagttaagatctgcattgaaaaaacatgcaacagatactctaggacctatgatgtttgccaacactttgtgctccacactcttgaatt 28783030  T
Q  201 tgtcatttgt 210  Q
    ||||||||||    
T  28783031 tgtcatttgt 28783040  T

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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 4 - 96
Target Start/End: Original strand, 28742014 - 28742106
Alignment:
Q  4 cccttttgtattgtagtaggctacatattctgaaatagttatttctttgtatttgggaggattgtcttctgataaaaattcttttataggtcc 96  Q
    |||||||| |||||||||||||||| | |||| || |||  ||||| | ||| | ||||| |||||||||||||||| |||||||||||||||    
T  28742014 cccttttgcattgtagtaggctacaaaatctgtaaaagtggtttctctatatcttggagggttgtcttctgataaaatttcttttataggtcc 28742106  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 117 - 210
Target Start/End: Original strand, 28699494 - 28699587
Alignment:
Q  117 taagatctgcattgaaaaaacatgcaacagatactctaggacctatgatgtttgccaacactttgtgctccacactcttgaatttgtcatttgt 210  Q
    ||||| |||| |||||||| ||||||||||||| ||| ||||| |||   |||||||  ||| | || || |||||||||||||||||||||||    
T  28699494 taagacctgccttgaaaaagcatgcaacagatattcttggaccaatgccatttgccagtactctatgttcaacactcttgaatttgtcatttgt 28699587  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 129 - 210
Target Start/End: Original strand, 28742139 - 28742220
Alignment:
Q  129 tgaaaaaacatgcaacagatactctaggacctatgatgtttgccaacactttgtgctccacactcttgaatttgtcatttgt 210  Q
    |||||||| |||||||||||||||| ||||| ||  | ||||| |  ||| ||||||| |||||||||||| ||||||||||    
T  28742139 tgaaaaaagatgcaacagatactcttggaccaatagtatttgctagtactctgtgctcaacactcttgaatctgtcatttgt 28742220  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 45 - 96
Target Start/End: Original strand, 28699422 - 28699473
Alignment:
Q  45 tttctttgtatttgggaggattgtcttctgataaaaattcttttataggtcc 96  Q
    ||||||||||| ||||||| |||| ||||||||| |||||| ||||||||||    
T  28699422 tttctttgtatctgggagggttgttttctgataataattctgttataggtcc 28699473  T

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Target: chr8 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 45 - 210
Target Start/End: Complemental strand, 10769564 - 10769399
Alignment:
Q  45 tttctttgtatttgggaggattgtcttctgataaaaattcttttataggtccgtattggtttgagaaagagttaagatctgcattgaaaaaacatgcaac 144  Q
    ||||| ||||| |||||||||||||||||||||| | ||| ||||||||||| ||  | |||||| | ||  || || | |    |||||||||||||||    
T  10769564 tttctctgtatatgggaggattgtcttctgataatagttcctttataggtccatagagctttgaggatgacctatgaccggtgcagaaaaaacatgcaac 10769465  T
Q  145 agatactctaggacctatgatgtttgccaacactttgtgctccacactcttgaatttgtcatttgt 210  Q
    ||||| ||| ||||| |   | ||||| |  ||| |||||||||||||||||||||||||||||||    
T  10769464 agatattcttggaccaacattatttgcaagaactctgtgctccacactcttgaatttgtcatttgt 10769399  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 18 - 96
Target Start/End: Complemental strand, 2034862 - 2034784
Alignment:
Q  18 agtaggctacatattctgaaatagttatttctttgtatttgggaggattgtcttctgataaaaattcttttataggtcc 96  Q
    |||| |||||||| || ||||  ||| ||||| ||||||| |||||||||||||||||||| | ||| |||||||||||    
T  2034862 agtaagctacataatcagaaaccgttgtttctctgtatttaggaggattgtcttctgataatagttcctttataggtcc 2034784  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 16 - 78
Target Start/End: Complemental strand, 2055936 - 2055874
Alignment:
Q  16 gtagtaggctacatattctgaaatagttatttctttgtatttgggaggattgtcttctgataa 78  Q
    ||||||||||||||| || | || |||  ||||||||||||| ||||||||||||||||||||    
T  2055936 gtagtaggctacataatcagcaacagtagtttctttgtatttaggaggattgtcttctgataa 2055874  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 45 - 96
Target Start/End: Complemental strand, 2048156 - 2048105
Alignment:
Q  45 tttctttgtatttgggaggattgtcttctgataaaaattcttttataggtcc 96  Q
    ||||| ||||||| |||||||||||||||||||| | |||||| ||||||||    
T  2048156 tttctctgtatttaggaggattgtcttctgataatagttctttcataggtcc 2048105  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 45 - 78
Target Start/End: Complemental strand, 2059111 - 2059078
Alignment:
Q  45 tttctttgtatttgggaggattgtcttctgataa 78  Q
    ||||| ||||||||||||||||||||||||||||    
T  2059111 tttctctgtatttgggaggattgtcttctgataa 2059078  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 77
Target Start/End: Complemental strand, 2052050 - 2052018
Alignment:
Q  45 tttctttgtatttgggaggattgtcttctgata 77  Q
    ||||| |||||||||||||||||||||||||||    
T  2052050 tttctctgtatttgggaggattgtcttctgata 2052018  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 45 - 96
Target Start/End: Original strand, 48904896 - 48904947
Alignment:
Q  45 tttctttgtatttgggaggattgtcttctgataaaaattcttttataggtcc 96  Q
    ||||| |||||||||||||||||||||| ||||| | ||| |||||||||||    
T  48904896 tttctctgtatttgggaggattgtcttcagataatagttcctttataggtcc 48904947  T

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