View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11380_low_11 (Length: 226)

Name: NF11380_low_11
Description: NF11380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11380_low_11
NF11380_low_11
[»] chr3 (14 HSPs)
chr3 (3-221)||(5155895-5156108)
chr3 (25-221)||(5159941-5160138)
chr3 (87-183)||(46479519-46479615)
chr3 (90-182)||(46497677-46497769)
chr3 (104-179)||(46526729-46526804)
chr3 (136-221)||(51942908-51942993)
chr3 (87-190)||(47397615-47397718)
chr3 (106-185)||(45884033-45884112)
chr3 (89-172)||(46544188-46544271)
chr3 (110-183)||(46473681-46473754)
chr3 (106-167)||(16025229-16025290)
chr3 (113-170)||(46549300-46549357)
chr3 (131-179)||(45902727-45902775)
chr3 (90-182)||(46490442-46490533)
[»] chr4 (4 HSPs)
chr4 (87-183)||(35162168-35162264)
chr4 (105-170)||(35155165-35155230)
chr4 (91-148)||(28286744-28286801)
chr4 (106-171)||(15555760-15555825)
[»] chr2 (3 HSPs)
chr2 (89-183)||(20169332-20169426)
chr2 (105-183)||(20358876-20358954)
chr2 (99-183)||(20144358-20144442)
[»] chr8 (2 HSPs)
chr8 (99-183)||(9693018-9693102)
chr8 (105-182)||(9675997-9676074)
[»] chr7 (2 HSPs)
chr7 (105-214)||(17708020-17708129)
chr7 (106-181)||(17735675-17735750)


Alignment Details
Target: chr3 (Bit Score: 137; Significance: 1e-71; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 3 - 221
Target Start/End: Original strand, 5155895 - 5156108
Alignment:
Q  3 aaaattagactaacaaaatgtaaatttgttctattgaaatacttcaaaaaagaatttattttttctatttctatagttgattta-aaatttgatttggtt 101  Q
    |||||||||||||||||| || ||||||||||||||||||||||| ||||||||||||||| ||||||      ||| |||||  |||||||||||||||    
T  5155895 aaaattagactaacaaaaagttaatttgttctattgaaatacttccaaaaagaatttatttgttctat------agtggatttttaaatttgatttggtt 5155988  T
Q  102 taaaaggctgttgaagtgacaaaagaagggaatttatgggctaaaaaagagaaaaatggccttattaaagaacttcttcctccaagatcatttgatagct 201  Q
    | |||||||||||||||||| ||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||    
T  5155989 ttaaaggctgttgaagtgactaaagaagggaatttatgggctgaaaaagagacaaatggccttattaaagaacttcttcctccaagatcagttgatagct 5156088  T
Q  202 taccccgcctcatctctgct 221  Q
    || |||||||||||| ||||    
T  5156089 taacccgcctcatctttgct 5156108  T

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Target: chr3; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 25 - 221
Target Start/End: Original strand, 5159941 - 5160138
Alignment:
Q  25 aatttgttctattgaaatacttcaaaaaagaatttattttttctatttctatagttgattta-aaatttgatttggtttaaaaggctgttgaagtgacaa 123  Q
    ||||| |||||||||| |||||| ||||||||| ||||| ||||||||  ||| |||||||  ||||||||| | ||||  |||||| |||||||||| |    
T  5159941 aatttcttctattgaattacttccaaaaagaatctatttgttctatttgcataattgatttttaaatttgatattgttttgaaggctattgaagtgacta 5160040  T
Q  124 aagaagggaatttatgggctaaaaaagagaaaaatggccttattaaagaacttcttcctccaagatcatttgatagcttaccccgcctcatctctgct 221  Q
    |||||| ||||||||||||| ||||||||| ||||||||||||||||||||||||||||| ||||||| ||||||| ||| || | ||||||| ||||    
T  5160041 aagaagtgaatttatgggctgaaaaagagacaaatggccttattaaagaacttcttcctctaagatcagttgataggttaaccagactcatctttgct 5160138  T

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Target: chr3; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 87 - 183
Target Start/End: Original strand, 46479519 - 46479615
Alignment:
Q  87 aaatttgatttggtttaaaaggctgttgaagtgacaaaagaagggaatttatgggctaaaaaagagaaaaatggccttattaaagaacttcttcctc 183  Q
    ||||||||| |||||| |||||||||||||||||| || |||| ||||| ||||||| ||||||||| |||||||||||||||||||||||||||||    
T  46479519 aaatttgatatggttttaaaggctgttgaagtgaccaatgaagtgaattcatgggctgaaaaagagacaaatggccttattaaagaacttcttcctc 46479615  T

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Target: chr3; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 90 - 182
Target Start/End: Original strand, 46497677 - 46497769
Alignment:
Q  90 tttgatttggtttaaaaggctgttgaagtgacaaaagaagggaatttatgggctaaaaaagagaaaaatggccttattaaagaacttcttcct 182  Q
    |||||| |||||| |||||||||||||||||  || |||| ||||||||||||| ||| ||||| |||||| |||||||||||||||||||||    
T  46497677 tttgatatggttttaaaggctgttgaagtgaacaatgaagtgaatttatgggctgaaagagagacaaatggtcttattaaagaacttcttcct 46497769  T

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Target: chr3; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 104 - 179
Target Start/End: Complemental strand, 46526804 - 46526729
Alignment:
Q  104 aaaggctgttgaagtgacaaaagaagggaatttatgggctaaaaaagagaaaaatggccttattaaagaacttctt 179  Q
    ||||| |||||||||||  ||||||| ||||||||||||| ||||||||| |||||||||||||| ||||||||||    
T  46526804 aaaggttgttgaagtgattaaagaagtgaatttatgggctgaaaaagagacaaatggccttattagagaacttctt 46526729  T

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Target: chr3; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 136 - 221
Target Start/End: Original strand, 51942908 - 51942993
Alignment:
Q  136 tatgggctaaaaaagagaaaaatggccttattaaagaacttcttcctccaagatcatttgatagcttaccccgcctcatctctgct 221  Q
    |||||| | ||||||||| |||||||||||||||||||||| |||||||| ||||| ||||||||||| |  ||||||||| ||||    
T  51942908 tatgggttgaaaaagagacaaatggccttattaaagaacttattcctccaggatcagttgatagcttaactagcctcatctttgct 51942993  T

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Target: chr3; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 87 - 190
Target Start/End: Complemental strand, 47397718 - 47397615
Alignment:
Q  87 aaatttgatttggtttaaaaggctgttgaagtgacaaaagaagggaatttatgggctaaaaaagagaaaaatggccttattaaagaacttcttcctccaa 186  Q
    ||||||||| ||| || |||||||| ||||||| | |||||||  ||||||||||| ||||| |||| ||||||  ||||||||||| || |||||||||    
T  47397718 aaatttgatatgggtttaaaggctgatgaagtggctaaagaagtaaatttatgggccaaaaatgagacaaatggttttattaaagaaatttttcctccaa 47397619  T
Q  187 gatc 190  Q
    ||||    
T  47397618 gatc 47397615  T

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Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 106 - 185
Target Start/End: Complemental strand, 45884112 - 45884033
Alignment:
Q  106 aggctgttgaagtgacaaaagaagggaatttatgggctaaaaaagagaaaaatggccttattaaagaacttcttcctcca 185  Q
    |||| ||||||||||| || || | ||||||||||||| ||||||||| |||||| |||||||||||| ||||| |||||    
T  45884112 aggcggttgaagtgaccaatgacgtgaatttatgggctgaaaaagagacaaatggtcttattaaagaaattctttctcca 45884033  T

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Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 89 - 172
Target Start/End: Original strand, 46544188 - 46544271
Alignment:
Q  89 atttgatttggtttaaaaggctgttgaagtgacaaaagaagggaatttatgggctaaaaaagagaaaaatggccttattaaaga 172  Q
    ||||||| | |||| ||||||| |||||| || |||||||| ||||||||||||| ||||||||| |||||| ||||| |||||    
T  46544188 atttgatgttgttttaaaggcttttgaagggagaaaagaagtgaatttatgggctgaaaaagagacaaatggtcttataaaaga 46544271  T

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Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 110 - 183
Target Start/End: Original strand, 46473681 - 46473754
Alignment:
Q  110 tgttgaagtgacaaaagaagggaatttatgggctaaaaaagagaaaaatggccttattaaagaacttcttcctc 183  Q
    |||||||||||| || |||| |||  |||||||| ||||||||| |||||| |||||||||||| |||||||||    
T  46473681 tgttgaagtgaccaatgaagtgaacatatgggctgaaaaagagacaaatggtcttattaaagaaattcttcctc 46473754  T

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Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 106 - 167
Target Start/End: Original strand, 16025229 - 16025290
Alignment:
Q  106 aggctgttgaagtgacaaaagaagggaatttatgggctaaaaaagagaaaaatggccttatt 167  Q
    |||| |||||||||||||| || | |||||||||||||||||| |||| |||||| ||||||    
T  16025229 aggcagttgaagtgacaaatgatgtgaatttatgggctaaaaaggagacaaatggtcttatt 16025290  T

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Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 113 - 170
Target Start/End: Complemental strand, 46549357 - 46549300
Alignment:
Q  113 tgaagtgacaaaagaagggaatttatgggctaaaaaagagaaaaatggccttattaaa 170  Q
    ||||||| | ||||||| ||||||||||||| ||||||||| |||||| |||||||||    
T  46549357 tgaagtggccaaagaagtgaatttatgggctgaaaaagagacaaatggtcttattaaa 46549300  T

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Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 179
Target Start/End: Original strand, 45902727 - 45902775
Alignment:
Q  131 gaatttatgggctaaaaaagagaaaaatggccttattaaagaacttctt 179  Q
    ||||||||||||| ||||||||| ||||||||||||||| ||| |||||    
T  45902727 gaatttatgggctgaaaaagagacaaatggccttattaatgaatttctt 45902775  T

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Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 182
Target Start/End: Original strand, 46490442 - 46490533
Alignment:
Q  90 tttgatttggtttaaaaggctgttgaagtgacaaaagaagggaatttatgggctaaaaaagagaaaaatggccttattaaagaacttcttcct 182  Q
    |||||| |||||| ||||||   ||||||| | ||||||| |||||||||||||  |||| ||| ||||||  |||||||| |||||||||||    
T  46490442 tttgatatggttttaaaggcaagtgaagtggccaaagaagtgaatttatgggctgcaaaa-agacaaatggtattattaaacaacttcttcct 46490533  T

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Target: chr4 (Bit Score: 61; Significance: 2e-26; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 87 - 183
Target Start/End: Original strand, 35162168 - 35162264
Alignment:
Q  87 aaatttgatttggtttaaaaggctgttgaagtgacaaaagaagggaatttatgggctaaaaaagagaaaaatggccttattaaagaacttcttcctc 183  Q
    ||||||||  |||||| ||||||| |||||||||| ||||||| ||||||||||||| ||||||| | |||||||||||||||||||||||||||||    
T  35162168 aaatttgacatggttttaaaggctattgaagtgactaaagaagtgaatttatgggctgaaaaagaaacaaatggccttattaaagaacttcttcctc 35162264  T

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Target: chr4; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 105 - 170
Target Start/End: Original strand, 35155165 - 35155230
Alignment:
Q  105 aaggctgttgaagtgacaaaagaagggaatttatgggctaaaaaagagaaaaatggccttattaaa 170  Q
    |||||| |||||||||| ||||||| ||||||||||||||||||||||| ||||||||||||||||    
T  35155165 aaggctattgaagtgactaaagaagtgaatttatgggctaaaaaagagacaaatggccttattaaa 35155230  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 91 - 148
Target Start/End: Complemental strand, 28286801 - 28286744
Alignment:
Q  91 ttgatttggtttaaaaggctgttgaagtgacaaaagaagggaatttatgggctaaaaa 148  Q
    ||||| |||||| ||||| ||||||||||||||||||||  |||||||||||| ||||    
T  28286801 ttgatatggtttcaaaggttgttgaagtgacaaaagaagtaaatttatgggctgaaaa 28286744  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 106 - 171
Target Start/End: Original strand, 15555760 - 15555825
Alignment:
Q  106 aggctgttgaagtgacaaaagaagggaatttatgggctaaaaaagagaaaaatggccttattaaag 171  Q
    |||||||||||||||| || ||||  |||| ||||| | |||| |||| |||||||||||||||||    
T  15555760 aggctgttgaagtgaccaatgaagtcaattcatgggttgaaaaggagacaaatggccttattaaag 15555825  T

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Target: chr2 (Bit Score: 51; Significance: 2e-20; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 89 - 183
Target Start/End: Complemental strand, 20169426 - 20169332
Alignment:
Q  89 atttgatttggtttaaaaggctgttgaagtgacaaaagaagggaatttatgggctaaaaaagagaaaaatggccttattaaagaacttcttcctc 183  Q
    ||||||| ||||||  |||| |||||||||||||||| ||| |||||||||| |  ||||||||| || ||||||||||||||||||||||||||    
T  20169426 atttgatgtggttttgaaggttgttgaagtgacaaaaaaagtgaatttatggtcggaaaaagagacaattggccttattaaagaacttcttcctc 20169332  T

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Target: chr2; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 105 - 183
Target Start/End: Original strand, 20358876 - 20358954
Alignment:
Q  105 aaggctgttgaagtgacaaaagaagggaatttatgggctaaaaaagagaaaaatggccttattaaagaacttcttcctc 183  Q
    |||| |||||||||||||||| ||| |||||||||| || ||||||||| || ||||||||||||||||||||||||||    
T  20358876 aaggttgttgaagtgacaaaaaaagtgaatttatggtctgaaaaagagacaattggccttattaaagaacttcttcctc 20358954  T

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Target: chr2; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 99 - 183
Target Start/End: Original strand, 20144358 - 20144442
Alignment:
Q  99 gtttaaaaggctgttgaagtgacaaaagaagggaatttatgggctaaaaaagagaaaaatggccttattaaagaacttcttcctc 183  Q
    |||| ||||| |||||||||||||||| ||| |||| ||||| |  ||||||||| || ||||||||||||||||||||||||||    
T  20144358 gttttaaaggttgttgaagtgacaaaaaaagtgaatctatggtcggaaaaagagacaattggccttattaaagaacttcttcctc 20144442  T

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Target: chr8 (Bit Score: 49; Significance: 3e-19; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 99 - 183
Target Start/End: Complemental strand, 9693102 - 9693018
Alignment:
Q  99 gtttaaaaggctgttgaagtgacaaaagaagggaatttatgggctaaaaaagagaaaaatggccttattaaagaacttcttcctc 183  Q
    |||| ||||||| |||||||||| ||| ||| ||||||||||||| ||||||||| | ||||||||||||||||| |||||||||    
T  9693102 gttttaaaggctattgaagtgactaaacaagtgaatttatgggctgaaaaagagacatatggccttattaaagaaattcttcctc 9693018  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 105 - 182
Target Start/End: Complemental strand, 9676074 - 9675997
Alignment:
Q  105 aaggctgttgaagtgacaaaagaagggaatttatgggctaaaaaagagaaaaatggccttattaaagaacttcttcct 182  Q
    |||||| |||||||||| ||||| | ||||||||||||| ||||||| | | | ||||||||||||||| ||||||||    
T  9676074 aaggctattgaagtgactaaagaggtgaatttatgggctgaaaaagaaacatacggccttattaaagaaattcttcct 9675997  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 105 - 214
Target Start/End: Original strand, 17708020 - 17708129
Alignment:
Q  105 aaggctgttgaagtgacaaaagaagggaatttatgggctaaaaaagagaaaaatggccttattaaagaacttcttcctccaagatcatttgatagcttac 204  Q
    ||||||| |||||||| | |||||| ||||||||||||| |||| |||| ||| || ||||||||| | |||||||| |  || ||| |||| ||||||     
T  17708020 aaggctgatgaagtgagagaagaagtgaatttatgggctgaaaaggagacaaaagggcttattaaaaatcttcttccacacaggtcagttgacagcttaa 17708119  T
Q  205 cccgcctcat 214  Q
    || |||||||    
T  17708120 ccagcctcat 17708129  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 106 - 181
Target Start/End: Original strand, 17735675 - 17735750
Alignment:
Q  106 aggctgttgaagtgacaaaagaagggaatttatgggctaaaaaagagaaaaatggccttattaaagaacttcttcc 181  Q
    |||||| |||||||| |||||||| ||||||||||||||| || |||| ||| ||  ||||||| || ||||||||    
T  17735675 aggctgatgaagtgataaaagaagtgaatttatgggctaataaggagacaaaggggtttattaatgatcttcttcc 17735750  T

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