View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11380_low_12 (Length: 218)
Name: NF11380_low_12
Description: NF11380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11380_low_12 |
 | |
|
| [»] scaffold0267 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 179; Significance: 9e-97; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 20 - 202
Target Start/End: Original strand, 4131058 - 4131240
Alignment:
| Q |
20 |
agaggcactcgattgaaggaaatgcctgtgcaaatatccagactagaaaatctccaaactttgtcggactttgttgtaggtattcaggacgatggattga |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4131058 |
agaggcactcgattgaaggaaatgcctgtgcaaatatccagactagaaaatctccaaactttgtcggactttgttgtaggtattcaggacgatggattga |
4131157 |
T |
|
| Q |
120 |
agatttcagacttgggaaaacattcccatctacgggaaaaccttaccatctcacaacttcaaaatgtaactgattcatcccat |
202 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4131158 |
agatttcagatttgggaaaacattcccatctacgggaaaaccttaccatctcacaacttcaaaatgtaactgattcatcccat |
4131240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 20 - 202
Target Start/End: Complemental strand, 4091281 - 4091099
Alignment:
| Q |
20 |
agaggcactcgattgaaggaaatgcctgtgcaaatatccagactagaaaatctccaaactttgtcggactttgttgtaggtattcaggacgatggattga |
119 |
Q |
| |
|
|||||||||| ||||||||||||||| || ||| | |||| |||||||||||||||||| ||||| ||||||||| ||| || ||| |||||||| |
|
|
| T |
4091281 |
agaggcactcaattgaaggaaatgcccgtacaactctccaaactagaaaatctccaaaccctgtcgagctttgttgttagtaaacaagacattggattga |
4091182 |
T |
|
| Q |
120 |
agatttcagacttgggaaaacattcccatctacgggaaaaccttaccatctcacaacttcaaaatgtaactgattcatcccat |
202 |
Q |
| |
|
||||| |||| ||||||||| ||| |||| ||| || || ||| |||||||||| |||||||||||||||||| |||||||| |
|
|
| T |
4091181 |
agattgcagatttgggaaaatatttccatttacagggaagactttccatctcacagcttcaaaatgtaactgatccatcccat |
4091099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 20 - 202
Target Start/End: Complemental strand, 4059544 - 4059362
Alignment:
| Q |
20 |
agaggcactcgattgaaggaaatgcctgtgcaaatatccagactagaaaatctccaaactttgtcggactttgttgtaggtattcaggacgatggattga |
119 |
Q |
| |
|
||||| ||||||||||||||||| ||||||||| |||||| |||||||||||| ||||| ||||||||||||||||| | | |||||| || |||| |
|
|
| T |
4059544 |
agaggtactcgattgaaggaaattcctgtgcaagtatccaaactagaaaatctacaaaccttgtcggactttgttgtcagctctgaggacgtcgggttga |
4059445 |
T |
|
| Q |
120 |
agatttcagacttgggaaaacattcccatctacgggaaaaccttaccatctcacaacttcaaaatgtaactgattcatcccat |
202 |
Q |
| |
|
||||| |||| | |||||| |||||||||||| || || |||| ||||||| | ||||||||| ||||||| |||||||| |
|
|
| T |
4059444 |
agattgcagatattggaaaatattcccatctacagggaagcctttgcatctcaaagcttcaaaatttaactgacccatcccat |
4059362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 20 - 202
Target Start/End: Complemental strand, 4079153 - 4078971
Alignment:
| Q |
20 |
agaggcactcgattgaaggaaatgcctgtgcaaatatccagactagaaaatctccaaactttgtcggactttgttgtaggtattcaggacgatggattga |
119 |
Q |
| |
|
||||||||||||||||| ||||| ||||||||| |||||| |||||||||||| ||||| ||||||||||||||||| | | |||||| || |||| |
|
|
| T |
4079153 |
agaggcactcgattgaatgaaattcctgtgcaagtatccaaactagaaaatctacaaaccttgtcggactttgttgtcagctctgaggacgtcgggttga |
4079054 |
T |
|
| Q |
120 |
agatttcagacttgggaaaacattcccatctacgggaaaaccttaccatctcacaacttcaaaatgtaactgattcatcccat |
202 |
Q |
| |
|
||||| |||| | |||||| |||||||||||| || || |||| ||||||| | ||||||||| ||||||| |||||||| |
|
|
| T |
4079053 |
agattgcagatattggaaaatattcccatctacagggaagcctttgcatctcaaagcttcaaaatttaactgacccatcccat |
4078971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 20 - 148
Target Start/End: Complemental strand, 4114017 - 4113889
Alignment:
| Q |
20 |
agaggcactcgattgaaggaaatgcctgtgcaaatatccagactagaaaatctccaaactttgtcggactttgttgtaggtattcaggacgatggattga |
119 |
Q |
| |
|
|||||||||||| |||||||||| |||||||||||||||| ||||||||| |||||||| ||||||| ||| |||| | |||| |||| ||||||| |
|
|
| T |
4114017 |
agaggcactcgactgaaggaaattcctgtgcaaatatccaaactagaaaacctccaaaccttgtcgggatttcttgtcaatgttcatgacgttggattgg |
4113918 |
T |
|
| Q |
120 |
agatttcagacttgggaaaacattcccat |
148 |
Q |
| |
|
||||| |||| ||| |||| |||||||| |
|
|
| T |
4113917 |
agattgcagatatggtaaaatattcccat |
4113889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 31 - 121
Target Start/End: Complemental strand, 11490139 - 11490049
Alignment:
| Q |
31 |
attgaaggaaatgcctgtgcaaatatccagactagaaaatctccaaactttgtcggactttgttgtaggtattcaggacgatggattgaag |
121 |
Q |
| |
|
||||| ||| |||||||| |||||| ||| |||||||||| |||| |||||||||||||||||||| || | ||| | |||||||||||| |
|
|
| T |
11490139 |
attgagggagatgcctgtacaaatagccaaactagaaaatttccatactttgtcggactttgttgtcggcaagcagaatgatggattgaag |
11490049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 20 - 202
Target Start/End: Original strand, 13934485 - 13934667
Alignment:
| Q |
20 |
agaggcactcgattgaaggaaatgcctgtgcaaatatccagactagaaaatctccaaactttgtcggactttgttgtaggtattcaggacgatggattga |
119 |
Q |
| |
|
|||||||||| |||| | ||||| |||| ||||||| | |||||||||||| ||||| ||||| ||||||||||| | |||||| || |||| |
|
|
| T |
13934485 |
agaggcactccattgtatgaaattcctgcacaaatattaaaactagaaaatctacaaaccttgtctgactttgttgtcaactctgaggacgtcgggttga |
13934584 |
T |
|
| Q |
120 |
agatttcagacttgggaaaacattcccatctacgggaaaaccttaccatctcacaacttcaaaatgtaactgattcatcccat |
202 |
Q |
| |
|
||||| |||| |||||||| |||||||||||| || | |||| ||||||| | ||||||||||||||||| |||||||| |
|
|
| T |
13934585 |
agattgcagatatgggaaaatattcccatctacaggggagccttttcatctcaaagcttcaaaatgtaactgacccatcccat |
13934667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0267 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0267
Description:
Target: scaffold0267; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 84
Target Start/End: Original strand, 19800 - 19864
Alignment:
| Q |
20 |
agaggcactcgattgaaggaaatgcctgtgcaaatatccagactagaaaatctccaaactttgtc |
84 |
Q |
| |
|
||||| |||| ||||||||| ||||| || |||||| |||||||| ||||||| ||||||||||| |
|
|
| T |
19800 |
agaggtactcaattgaaggagatgccagtacaaataaccagactacaaaatcttcaaactttgtc |
19864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University