View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11380_low_3 (Length: 460)
Name: NF11380_low_3
Description: NF11380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11380_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 15 - 336
Target Start/End: Complemental strand, 53936189 - 53935866
Alignment:
| Q |
15 |
ggtttaaatctcgatttcttaaatatataatacaatttatcaatcaacaataacaataaaatctaattctaattagtggaataggctacgtagatcaaat |
114 |
Q |
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| T |
53936189 |
ggtttaaatctcgacttcttatatatataatacaatttatcaatcaacaataacaataaaatttaattatagttagtgaagtaggctacgtagatcaaat |
53936090 |
T |
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| Q |
115 |
tacgaaataataaaatttgattagactcaatcaaagacaatacaagatcaaacatttgatatagagtttttctttggtcatttgcaataccattgaaaag |
214 |
Q |
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| T |
53936089 |
tacgaaataataaaatttgattagactcaatcaaagacaatacaagatcaaacatttgata--gagtttttctttggtcatttgcaataccattgaaaag |
53935992 |
T |
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| Q |
215 |
caatcacaagaagtcagatctttcacactctatttccacacaatctcattttcaaactatcccagttatctctctatttacatatgaaatgtctcacact |
314 |
Q |
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| T |
53935991 |
caatcacaagaagtcagatctttcacactctatttccacacaatctcattttcaaactatcccagttgtctctctatttacatatgaaatgtctcacact |
53935892 |
T |
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| Q |
315 |
c----tgttaagatttccttttgatt |
336 |
Q |
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| T |
53935891 |
cagtttgttaagatttccttttgatt |
53935866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 349 - 443
Target Start/End: Complemental strand, 53935839 - 53935745
Alignment:
| Q |
349 |
tttatgctagttatttatcccctaagtacaagctctcctaaaaacagcaataacgaagttatgttacaacattgtcttatatcaaattttgagac |
443 |
Q |
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| T |
53935839 |
tttatgctagttatttatcccctaagtacaagctctcctaaaaacagcaataacgaagttatgttacaacattatcttatatcaaattttgagac |
53935745 |
T |
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