View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11380_low_4 (Length: 301)

Name: NF11380_low_4
Description: NF11380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11380_low_4
NF11380_low_4
[»] chr3 (5 HSPs)
chr3 (1-140)||(10344634-10344773)
chr3 (209-271)||(10344777-10344839)
chr3 (31-78)||(54726133-54726180)
chr3 (31-80)||(54726070-54726119)
chr3 (32-80)||(52638109-52638157)
[»] chr7 (4 HSPs)
chr7 (17-84)||(30486584-30486652)
chr7 (10-80)||(27115311-27115382)
chr7 (28-90)||(30486650-30486713)
chr7 (31-80)||(40211167-40211216)
[»] chr6 (3 HSPs)
chr6 (31-90)||(29168551-29168611)
chr6 (10-60)||(29168474-29168525)
chr6 (31-80)||(11400788-11400837)
[»] chr8 (1 HSPs)
chr8 (30-80)||(39910477-39910528)
[»] chr4 (3 HSPs)
chr4 (19-90)||(40663502-40663573)
chr4 (48-80)||(408572-408604)
chr4 (48-84)||(30942471-30942507)
[»] chr1 (13 HSPs)
chr1 (31-90)||(50144205-50144264)
chr1 (15-78)||(37096176-37096240)
chr1 (12-90)||(27732181-27732260)
chr1 (30-80)||(34500167-34500218)
chr1 (48-90)||(6735730-6735772)
chr1 (48-78)||(28456854-28456884)
chr1 (30-90)||(43603640-43603701)
chr1 (31-80)||(50144154-50144203)
chr1 (48-80)||(21444236-21444268)
chr1 (17-68)||(27732274-27732326)
chr1 (28-80)||(29204488-29204539)
chr1 (31-71)||(40960824-40960864)
chr1 (32-80)||(49979954-49980002)
[»] chr5 (9 HSPs)
chr5 (24-80)||(36409645-36409702)
chr5 (15-80)||(27385544-27385610)
chr5 (30-90)||(12165297-12165358)
chr5 (48-77)||(14631035-14631064)
chr5 (31-80)||(14642092-14642141)
chr5 (24-77)||(33728966-33729019)
chr5 (49-90)||(36409704-36409745)
chr5 (4-44)||(10274068-10274108)
chr5 (31-71)||(17096458-17096498)
[»] scaffold0148 (1 HSPs)
scaffold0148 (30-80)||(21197-21248)
[»] chr2 (2 HSPs)
chr2 (31-90)||(4637022-4637081)
chr2 (22-84)||(34777195-34777256)
[»] scaffold0756 (1 HSPs)
scaffold0756 (31-80)||(3533-3582)
[»] scaffold0542 (1 HSPs)
scaffold0542 (31-80)||(3490-3539)


Alignment Details
Target: chr3 (Bit Score: 124; Significance: 8e-64; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 1 - 140
Target Start/End: Original strand, 10344634 - 10344773
Alignment:
Q  1 atgaaaaataatattccctccgatctcatttataagcaaattttcacttttagattcattgaataaataatatatgtggtatatgatatacaaaatcaag 100  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||     
T  10344634 atgaaaaataatattccctctgatctcatttataagcaaattttcacttttagattcattgaataaatgatatatgtggtatatgatatacaaaatcaaa 10344733  T
Q  101 tatacaaacataaaattgatttcaaactattgacatgttt 140  Q
    |||||||||||||||||||||| |||||||||||||||||    
T  10344734 tatacaaacataaaattgattttaaactattgacatgttt 10344773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 209 - 271
Target Start/End: Original strand, 10344777 - 10344839
Alignment:
Q  209 aaactgcccttttggcctcatgttattattcttcaattgacttttagataaatatatttaaat 271  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  10344777 aaactgcccttttggcttcatgttattattcttcaattgacttttagataaatatatttaaat 10344839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 31 - 78
Target Start/End: Complemental strand, 54726180 - 54726133
Alignment:
Q  31 tataagcaaattttcacttttagattcattgaataaataatatatgtg 78  Q
    |||||||||||||| ||||||||||||||| ||| ||| |||||||||    
T  54726180 tataagcaaattttgacttttagattcatttaattaatgatatatgtg 54726133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 80
Target Start/End: Original strand, 54726070 - 54726119
Alignment:
Q  31 tataagcaaattttcacttttagattcattgaataaataatatatgtggt 80  Q
    |||||||||||||| | |||||| |||||| ||| |||||||||||||||    
T  54726070 tataagcaaattttgatttttaggttcattcaattaataatatatgtggt 54726119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 32 - 80
Target Start/End: Complemental strand, 52638157 - 52638109
Alignment:
Q  32 ataagcaaattttcacttttagattcattgaataaataatatatgtggt 80  Q
    ||||||||||||| ||||||||||||||| ||| ||| || ||||||||    
T  52638157 ataagcaaattttaacttttagattcattcaattaatgatgtatgtggt 52638109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 17 - 84
Target Start/End: Original strand, 30486584 - 30486652
Alignment:
Q  17 cctccgatctcatttataagcaaattttcactttt-agattcattgaataaataatatatgtggtatat 84  Q
    |||||| |||||||||||||  |||||||| |||| |||||||||||||||||||| ||||||||||||    
T  30486584 cctccggtctcatttataagtcaattttcattttttagattcattgaataaataatgtatgtggtatat 30486652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 10 - 80
Target Start/End: Complemental strand, 27115382 - 27115311
Alignment:
Q  10 aatattccctccgatctcatttataagcaaattttcactttt-agattcattgaataaataatatatgtggt 80  Q
    |||| |||||||| ||||| ||||||||||  |||||||||| ||||||||||||||||| || ||||||||    
T  27115382 aatactccctccggtctcaattataagcaacctttcactttttagattcattgaataaattatgtatgtggt 27115311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 28 - 90
Target Start/End: Complemental strand, 30486713 - 30486650
Alignment:
Q  28 atttataagcaaattttcactttt-agattcattgaataaataatatatgtggtatatgatata 90  Q
    ||||||||| ||||||| |||||| ||||| ||||||||||| || |||||||| |||||||||    
T  30486713 atttataagtaaattttgactttttagatttattgaataaatgatgtatgtggtgtatgatata 30486650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 80
Target Start/End: Original strand, 40211167 - 40211216
Alignment:
Q  31 tataagcaaattttcacttttagattcattgaataaataatatatgtggt 80  Q
    |||||||||||||| ||||||||||||||| ||| ||| || ||||||||    
T  40211167 tataagcaaattttgacttttagattcattcaatcaatgatgtatgtggt 40211216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 31 - 90
Target Start/End: Complemental strand, 29168611 - 29168551
Alignment:
Q  31 tataagcaaattttcac-ttttagattcattgaataaataatatatgtggtatatgatata 90  Q
    ||||||||||||||||| ||||||||||||||||||||| || |||||||||||| |||||    
T  29168611 tataagcaaattttcaccttttagattcattgaataaattatgtatgtggtatataatata 29168551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 10 - 60
Target Start/End: Original strand, 29168474 - 29168525
Alignment:
Q  10 aatattccctccgatctcatttataagcaaattttcac-ttttagattcatt 60  Q
    |||| |||||||| ||||||||||||||||||||| || |||||||||||||    
T  29168474 aatactccctccggtctcatttataagcaaattttgactttttagattcatt 29168525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 80
Target Start/End: Complemental strand, 11400837 - 11400788
Alignment:
Q  31 tataagcaaattttcacttttagattcattgaataaataatatatgtggt 80  Q
    |||||||||||||| | |||||||| |||| ||| |||||||||||||||    
T  11400837 tataagcaaattttgaattttagatgcatttaattaataatatatgtggt 11400788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 30 - 80
Target Start/End: Original strand, 39910477 - 39910528
Alignment:
Q  30 ttataagcaaattttcactttt-agattcattgaataaataatatatgtggt 80  Q
    |||||||||| ||||||||||| |||||||||||||||||||| ||||||||    
T  39910477 ttataagcaatttttcactttttagattcattgaataaataatgtatgtggt 39910528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 90
Target Start/End: Original strand, 40663502 - 40663573
Alignment:
Q  19 tccgatctcatttataagcaaattttcacttttagattcattgaataaataatatatgtggtatatgatata 90  Q
    |||| ||||| | |||||||| |||||||||||||||| | ||||||||||||||||| ||| ||| |||||    
T  40663502 tccggtctcaatcataagcaatttttcacttttagatttagtgaataaataatatatgcggtctataatata 40663573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 48 - 80
Target Start/End: Original strand, 408572 - 408604
Alignment:
Q  48 ttttagattcattgaataaataatatatgtggt 80  Q
    |||||||||||||||||||||||||||| ||||    
T  408572 ttttagattcattgaataaataatatatatggt 408604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 48 - 84
Target Start/End: Complemental strand, 30942507 - 30942471
Alignment:
Q  48 ttttagattcattgaataaataatatatgtggtatat 84  Q
    ||||||||||||||||||||| ||||||| |||||||    
T  30942507 ttttagattcattgaataaatgatatatgaggtatat 30942471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 31 - 90
Target Start/End: Complemental strand, 50144264 - 50144205
Alignment:
Q  31 tataagcaaattttcacttttagattcattgaataaataatatatgtggtatatgatata 90  Q
    |||||||||||||| |||||||| |||||| ||| ||||||||||||||| ||| |||||    
T  50144264 tataagcaaattttaacttttaggttcatttaattaataatatatgtggtttataatata 50144205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 78
Target Start/End: Complemental strand, 37096240 - 37096176
Alignment:
Q  15 tccctccgatctcatttataagcaaattttcactttt-agattcattgaataaataatatatgtg 78  Q
    ||||||||||||| ||||||| ||| |||| |||||| ||||||||||||||||| || ||||||    
T  37096240 tccctccgatctcgtttataaacaatttttgactttttagattcattgaataaatgatgtatgtg 37096176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 12 - 90
Target Start/End: Original strand, 27732181 - 27732260
Alignment:
Q  12 tattccctccgatctcatttataagcaaattttcactttt-agattcattgaataaataatatatgtggtatatgatata 90  Q
    ||||| ||||| ||||| ||||| |||| ||||||||||| || |||||||||||||| || |||| ||| |||||||||    
T  27732181 tattcactccggtctcaattataggcaacttttcactttttaggttcattgaataaatgatgtatgcggtctatgatata 27732260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 30 - 80
Target Start/End: Complemental strand, 34500218 - 34500167
Alignment:
Q  30 ttataagcaaattttcactttt-agattcattgaataaataatatatgtggt 80  Q
    |||||||||| ||||||||||| ||||||||||||||||||||  |||||||    
T  34500218 ttataagcaatttttcactttttagattcattgaataaataatgcatgtggt 34500167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 48 - 90
Target Start/End: Original strand, 6735730 - 6735772
Alignment:
Q  48 ttttagattcattgaataaataatatatgtggtatatgatata 90  Q
    |||||||||||||||||||||||| |||||||| ||| |||||    
T  6735730 ttttagattcattgaataaataatgtatgtggtctataatata 6735772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 48 - 78
Target Start/End: Complemental strand, 28456884 - 28456854
Alignment:
Q  48 ttttagattcattgaataaataatatatgtg 78  Q
    |||||||||||||||||||||||||||||||    
T  28456884 ttttagattcattgaataaataatatatgtg 28456854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 90
Target Start/End: Original strand, 43603640 - 43603701
Alignment:
Q  30 ttataagcaaattttcactt-ttagattcattgaataaataatatatgtggtatatgatata 90  Q
    |||||||||||  |||| || ||||||||||| ||||||| ||||||||||||||| |||||    
T  43603640 ttataagcaaaaattcatttgttagattcattaaataaattatatatgtggtatataatata 43603701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 80
Target Start/End: Original strand, 50144154 - 50144203
Alignment:
Q  31 tataagcaaattttcacttttagattcattgaataaataatatatgtggt 80  Q
    |||||||||||||| |||||||| |||||| ||| |||||||||| ||||    
T  50144154 tataagcaaattttgacttttagtttcattcaattaataatatatatggt 50144203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 48 - 80
Target Start/End: Original strand, 21444236 - 21444268
Alignment:
Q  48 ttttagattcattgaataaataatatatgtggt 80  Q
    ||||||||||||| |||||||||||||||||||    
T  21444236 ttttagattcatttaataaataatatatgtggt 21444268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 68
Target Start/End: Complemental strand, 27732326 - 27732274
Alignment:
Q  17 cctccgatctcatttataagcaaattttcac-ttttagattcattgaataaat 68  Q
    |||||| ||||| |||||||||| ||||||| |||||| ||||||||||||||    
T  27732326 cctccggtctcaattataagcaacttttcactttttaggttcattgaataaat 27732274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 28 - 80
Target Start/End: Complemental strand, 29204539 - 29204488
Alignment:
Q  28 atttataagcaaattttcacttttagattcattgaataaataatatatgtggt 80  Q
    ||||||||||||||||  | ||||||||| ||||||||||| |||||||||||    
T  29204539 atttataagcaaattta-atttttagatttattgaataaatgatatatgtggt 29204488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 71
Target Start/End: Complemental strand, 40960864 - 40960824
Alignment:
Q  31 tataagcaaattttcacttttagattcattgaataaataat 71  Q
    |||||||||||||| ||||||||||||||| ||| ||||||    
T  40960864 tataagcaaattttgacttttagattcattcaatcaataat 40960824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 32 - 80
Target Start/End: Complemental strand, 49980002 - 49979954
Alignment:
Q  32 ataagcaaattttcacttttagattcattgaataaataatatatgtggt 80  Q
    ||||||||||||| ||||||||||||||| ||| ||| || ||||||||    
T  49980002 ataagcaaattttgacttttagattcattcaatcaatgatgtatgtggt 49979954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 24 - 80
Target Start/End: Original strand, 36409645 - 36409702
Alignment:
Q  24 tctcatttataagcaaattttcactttt-agattcattgaataaataatatatgtggt 80  Q
    ||||||||||||| ||||||| |||||| ||||| ||||||||||| |||||||||||    
T  36409645 tctcatttataagtaaattttaactttttagatttattgaataaatgatatatgtggt 36409702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 80
Target Start/End: Complemental strand, 27385610 - 27385544
Alignment:
Q  15 tccctccgatctcatttataagcaaattttcac-ttttagattcattgaataaataatatatgtggt 80  Q
    |||||||| ||| | |||||||||| ||||||| |||||| |||||||||||||| || ||||||||    
T  27385610 tccctccggtcttaattataagcaacttttcaccttttaggttcattgaataaatgatgtatgtggt 27385544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 90
Target Start/End: Original strand, 12165297 - 12165358
Alignment:
Q  30 ttataagcaaattttcactttt-agattcattgaataaataatatatgtggtatatgatata 90  Q
    ||||||||||||||| |||||| ||||||||| ||| ||| || |||||||||||| |||||    
T  12165297 ttataagcaaattttgactttttagattcatttaattaatgatgtatgtggtatataatata 12165358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 77
Target Start/End: Original strand, 14631035 - 14631064
Alignment:
Q  48 ttttagattcattgaataaataatatatgt 77  Q
    ||||||||||||||||||||||||||||||    
T  14631035 ttttagattcattgaataaataatatatgt 14631064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 80
Target Start/End: Complemental strand, 14642141 - 14642092
Alignment:
Q  31 tataagcaaattttcacttttagattcattgaataaataatatatgtggt 80  Q
    |||||||||||||| | ||||||||||||| ||| |||||| ||||||||    
T  14642141 tataagcaaattttgaattttagattcattcaattaataatgtatgtggt 14642092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 77
Target Start/End: Complemental strand, 33729019 - 33728966
Alignment:
Q  24 tctcatttataagcaaattttcacttttagattcattgaataaataatatatgt 77  Q
    ||||| |||||| |||||||| | |||||| |||||| ||||||||||||||||    
T  33729019 tctcaattataaacaaatttttagttttaggttcattcaataaataatatatgt 33728966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 90
Target Start/End: Complemental strand, 36409745 - 36409704
Alignment:
Q  49 tttagattcattgaataaataatatatgtggtatatgatata 90  Q
    |||||||||||||||||||| || |||||| |||||||||||    
T  36409745 tttagattcattgaataaatgatgtatgtgatatatgatata 36409704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 44
Target Start/End: Complemental strand, 10274108 - 10274068
Alignment:
Q  4 aaaaataatattccctccgatctcatttataagcaaatttt 44  Q
    |||||||||| ||||| | ||||||||||||||||||||||    
T  10274108 aaaaataatactcccttcaatctcatttataagcaaatttt 10274068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 71
Target Start/End: Original strand, 17096458 - 17096498
Alignment:
Q  31 tataagcaaattttcacttttagattcattgaataaataat 71  Q
    |||||||||||||| ||||||||||||||| ||| ||||||    
T  17096458 tataagcaaattttgacttttagattcattcaatcaataat 17096498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0148 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 30 - 80
Target Start/End: Complemental strand, 21248 - 21197
Alignment:
Q  30 ttataagcaaattttcactttt-agattcattgaataaataatatatgtggt 80  Q
    |||||||||||| ||||||||| ||||||||| ||||||| |||||||||||    
T  21248 ttataagcaaatgttcactttttagattcatttaataaatgatatatgtggt 21197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 31 - 90
Target Start/End: Original strand, 4637022 - 4637081
Alignment:
Q  31 tataagcaaattttcacttttagattcattgaataaataatatatgtggtatatgatata 90  Q
    |||||||||||||| |||||||| |||||| ||| |||||| |||||||| ||| |||||    
T  4637022 tataagcaaattttgacttttaggttcattcaatcaataatgtatgtggtctataatata 4637081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 84
Target Start/End: Original strand, 34777195 - 34777256
Alignment:
Q  22 gatctcatttataagcaaattttcacttttagattcattgaataaataatatatgtggtatat 84  Q
    ||||||| |||||| ||| |||| ||||| ||||||||| |||||||||| ||||||||||||    
T  34777195 gatctcaattataaacaactttttacttt-agattcattaaataaataatgtatgtggtatat 34777256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0756 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0756
Description:

Target: scaffold0756; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 80
Target Start/End: Original strand, 3533 - 3582
Alignment:
Q  31 tataagcaaattttcacttttagattcattgaataaataatatatgtggt 80  Q
    |||||||||||||| ||||||||||||||| ||| ||| || ||||||||    
T  3533 tataagcaaattttgacttttagattcattcaatcaatgatgtatgtggt 3582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0542 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0542
Description:

Target: scaffold0542; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 80
Target Start/End: Complemental strand, 3539 - 3490
Alignment:
Q  31 tataagcaaattttcacttttagattcattgaataaataatatatgtggt 80  Q
    |||||||||||||| ||||||||||||||| ||| ||| || ||||||||    
T  3539 tataagcaaattttgacttttagattcattcaatcaatgatgtatgtggt 3490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University