View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11380_low_7 (Length: 245)
Name: NF11380_low_7
Description: NF11380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11380_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 142; Significance: 1e-74; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 36587925 - 36588165
Alignment:
| Q |
1 |
tcatcaatactcaatttcgtattaaaatcaaaacccatagtcataaaccactaaaaacattaatcaccaaatccaattgtcaaacctagctagggtttca |
100 |
Q |
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| T |
36587925 |
tcatcaatactcgatttcgtattaaaatcaaaacccatagtcataaaccactaaaaacattaatcaccaaatccaattttcaaatctagctagggtttca |
36588024 |
T |
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| Q |
101 |
aaaagggg-nnnnnnnnccctaaaacaaattaagctaaacccttaaa----------caattcaagtccacacctgacaatctctatttccaccaatcaa |
189 |
Q |
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| T |
36588025 |
aaaaggggaaaaaaaaaccctaaaacaaattaagctaaacccttaaacaattcaattcaattcaagtccacacctgacaatctctatatccgccaatcaa |
36588124 |
T |
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| Q |
190 |
ttcaccagaagtcgaattcgaggaaatcccaacatcaattt |
230 |
Q |
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| T |
36588125 |
ttcaccagaagtcgaatttgacgaaatcccaagatcaattt |
36588165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 147 - 230
Target Start/End: Original strand, 39073731 - 39073814
Alignment:
| Q |
147 |
caattcaagtccacacctgacaatctctatttccaccaatcaattcaccagaagtcgaattcgaggaaatcccaacatcaattt |
230 |
Q |
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| T |
39073731 |
caattcaagtccacacctgacattctctatttccatcaatcaattcaccaaaagtcgaatttgacaaaatccaaacatcaattt |
39073814 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 147 - 230
Target Start/End: Complemental strand, 50861351 - 50861268
Alignment:
| Q |
147 |
caattcaagtccacacctgacaatctctatttccaccaatcaattcaccagaagtcgaattcgaggaaatcccaacatcaattt |
230 |
Q |
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| T |
50861351 |
caattcatgttcagacctggcattctctatttccaccaatcaattcaccagtagttgaattcgacgaaatcccaacatcaattt |
50861268 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 161 - 230
Target Start/End: Complemental strand, 49019135 - 49019066
Alignment:
| Q |
161 |
acctgacaatctctatttccaccaatcaattcaccagaagtcgaattcgaggaaatcccaacatcaattt |
230 |
Q |
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| T |
49019135 |
acctgacattctctattttcactaatcaattcaccagaagttgaattcgatgaaatccctacatcaattt |
49019066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 161 - 230
Target Start/End: Complemental strand, 8345237 - 8345168
Alignment:
| Q |
161 |
acctgacaatctctatttccaccaatcaattcaccagaagtcgaattcgaggaaatcccaacatcaattt |
230 |
Q |
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| T |
8345237 |
acctgacattctatattttcaccaatcaattcatcagaagttgaattggacgaaatccctacatcaattt |
8345168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 161 - 230
Target Start/End: Original strand, 42824377 - 42824446
Alignment:
| Q |
161 |
acctgacaatctctatttccaccaatcaattcaccagaagtcgaattcgaggaaatcccaacatcaattt |
230 |
Q |
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| T |
42824377 |
acctgacattctatattttcaccaatcaattcatcagaagttgaattggacgaaatccctacatcaattt |
42824446 |
T |
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