View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11381_high_15 (Length: 376)
Name: NF11381_high_15
Description: NF11381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11381_high_15 |
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Alignment Details
Target: chr8 (Bit Score: 214; Significance: 1e-117; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 19 - 244
Target Start/End: Complemental strand, 1771824 - 1771599
Alignment:
| Q |
19 |
gtccctagtgagacctgtaccaatttataaagatgttgaactattgttgaaggatacaacagttaccaatgatagaaatggaagagtacctaaaattttt |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
1771824 |
gtccctagtgagacctgtaccaatttataaagatgttgaactattgttgaaggaaacaacagttaccaatgatagaaatggaagagtacctaaatttttt |
1771725 |
T |
|
| Q |
119 |
atcataagcaaaagtgataatttgataacagaggattttcaaatgtggatgattaagagaagtggtccatttgagaaggtggaagtgatagaggattctg |
218 |
Q |
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| T |
1771724 |
atcataagcaaaagtgataatttgataacagaggattttcaaatgtggatgattaagagaagtggtccatttgagaaggtggaagtgatagaggattctg |
1771625 |
T |
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| Q |
219 |
atcacatggtcatgttctctaaacca |
244 |
Q |
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|||||||||||||||| ||||||||| |
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| T |
1771624 |
atcacatggtcatgttgtctaaacca |
1771599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 245 - 359
Target Start/End: Original strand, 1800453 - 1800567
Alignment:
| Q |
245 |
tttatcactttcacctcaacatatggaccagtactcccaatcatccacatttgataatcctctggaaacaaaatgtcttctttgctgatgatgaagactt |
344 |
Q |
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|||||||||||||||||||||||||||| |||| || |||||||||| |||||| ||||||||| |||||| | ||||||||||||||||||||| ||| |
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| T |
1800453 |
tttatcactttcacctcaacatatggacgagtattctcaatcatccatatttgaaaatcctctgtcaacaaattatcttctttgctgatgatgaaggctt |
1800552 |
T |
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| Q |
345 |
taggtacccttccat |
359 |
Q |
| |
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|||| |||||||||| |
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| T |
1800553 |
taggcacccttccat |
1800567 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 57 - 244
Target Start/End: Complemental strand, 1800606 - 1800419
Alignment:
| Q |
57 |
aactattgttgaaggatacaacagttaccaatgatagaaatggaagagtacctaaaatttttatcataagcaaaagtgataatttgataacagaggattt |
156 |
Q |
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||||||||||||| || |||| ||||||||| |||| |||||||| || |||||| || ||||| |||||| ||||||||| | ||||||||||| |
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| T |
1800606 |
aactattgttgaaagaaacaagagttaccaaacataggaatggaagggtgcctaaagccttcatcatcagcaaagaagataatttgttgacagaggattt |
1800507 |
T |
|
| Q |
157 |
tcaaatgtggatgattaagagaagtggtccatttgagaaggtggaagtgatagaggattctgatcacatggtcatgttctctaaacca |
244 |
Q |
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|||||| ||||||||| ||| | | |||||| || ||||| |||||||| ||||||| ||||||||||||||||| ||||||||| |
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| T |
1800506 |
tcaaatatggatgattgagaatactcgtccatatgttgaggtgaaagtgataaaggattcagatcacatggtcatgttttctaaacca |
1800419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 245 - 369
Target Start/End: Original strand, 1782673 - 1782797
Alignment:
| Q |
245 |
tttatcactttcacctcaacatatggaccagtactcccaatcatccacatttgataatcctctggaaacaaaatgtcttctttgctgatgatgaagactt |
344 |
Q |
| |
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|||||||||||||| ||||||||||||||||| ||| |||| ||||| | ||| ||||||| | | | ||||| |||||||||| |||||||||| |
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| T |
1782673 |
tttatcactttcacttcaacatatggaccagttctctcaattatccataattgcatatcctctttgatgatattgtctcctttgctgataatgaagactt |
1782772 |
T |
|
| Q |
345 |
taggtacccttccatgcctttgctt |
369 |
Q |
| |
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| T |
1782773 |
ttggtacccttccattcctctgctt |
1782797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 245 - 359
Target Start/End: Original strand, 1776247 - 1776361
Alignment:
| Q |
245 |
tttatcactttcacctcaacatatggaccagtactcccaatcatccacatttgataatcctctggaaacaaaatgtcttctttgctgatgatgaagactt |
344 |
Q |
| |
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|||||||||||||| ||||||||||||||||| ||| |||| ||||| | ||| ||||||| || ||||||||| |||| ||| |||||||||| |
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| T |
1776247 |
tttatcactttcacttcaacatatggaccagttctctcaattatccataattgcagatcctctctaatgaaaatgtctcctttagagataatgaagactt |
1776346 |
T |
|
| Q |
345 |
taggtacccttccat |
359 |
Q |
| |
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| ||||||||||||| |
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|
| T |
1776347 |
ttggtacccttccat |
1776361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 57 - 243
Target Start/End: Complemental strand, 1782826 - 1782640
Alignment:
| Q |
57 |
aactattgttgaaggatacaacagttaccaatgatagaaatggaagagtacctaaaatttttatcataagcaaaagtgataatttgataacagaggattt |
156 |
Q |
| |
|
||||| ||||||| || |||| ||||||||| | || |||||||| ||||| ||| | || || || |||||| | || ||| | || | ||||||| | |
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| T |
1782826 |
aactagtgttgaaagaaacaagagttaccaagcagaggaatggaagggtaccaaaagtcttcattatcagcaaaggagacaatatcatcaaagaggatat |
1782727 |
T |
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| Q |
157 |
tcaaatgtggatgattaagagaagtggtccatttgagaaggtggaagtgatagaggattctgatcacatggtcatgttctctaaacc |
243 |
Q |
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||| | ||||| ||| |||||| |||||||| || | ||| |||||||| ||||||| |||||||||||||||||||||||||| |
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| T |
1782726 |
gcaattatggataattgagagaactggtccatatgttgaagtgaaagtgataaaggattcagatcacatggtcatgttctctaaacc |
1782640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 106; Significance: 6e-53; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 240 - 369
Target Start/End: Complemental strand, 25730032 - 25729903
Alignment:
| Q |
240 |
aaccatttatcactttcacctcaacatatggaccagtactcccaatcatccacatttgataatcctctggaaacaaaatgtcttctttgctgatgatgaa |
339 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
25730032 |
aaccatttatcactttcacctcaacatatggaccagtattcccaatcacccacatttgataatcctctggaaacaaaatgtcttctttgctgatgatgta |
25729933 |
T |
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| Q |
340 |
gactttaggtacccttccatgcctttgctt |
369 |
Q |
| |
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||||||||| |||||||||| ||| ||||| |
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| T |
25729932 |
gactttaggcacccttccatacctatgctt |
25729903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 248 - 344
Target Start/End: Original strand, 32315559 - 32315655
Alignment:
| Q |
248 |
atcactttcacctcaacatatggaccagtactcccaatcatccacatttgataatcctctggaaacaaaatgtcttctttgctgatgatgaagactt |
344 |
Q |
| |
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||||| ||||||||||||||||||||||| ||| |||| ||||| | ||| ||||||| || ||||||||| ||||| ||| |||||||||| |
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| T |
32315559 |
atcacattcacctcaacatatggaccagttctctcaattatccataattgcatatcctctctaatgaaaatgtctcctttgtagataatgaagactt |
32315655 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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