View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11381_high_34 (Length: 248)
Name: NF11381_high_34
Description: NF11381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11381_high_34 |
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Alignment Details
Target: chr5 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 40104200 - 40103965
Alignment:
| Q |
1 |
tggtaagatagcactttaaaacgaacgagaatattcctactctagttcgtcacatttgtgaccttatgaacatgagtaaacaagtttaaatcaaccatac |
100 |
Q |
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||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
40104200 |
tggtaagatagcactttaaaacgaa-----atattcctactctggttcgtcacatttgtgaccttatgaacatgagtaaacaagtttaaaacaaccatac |
40104106 |
T |
|
| Q |
101 |
aaatatatcaaccaattagtgattcaattttagttttgatttatactctcttgtttatgatatataagagattacttttataaaacctcatagtctcctt |
200 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40104105 |
aaatatatcaaccaattagtgatttaattttagttttgatttatactcttttgtttatgatatataagagattacttttataaaacctcatagtctcctt |
40104006 |
T |
|
| Q |
201 |
tttgggtaatttctcataattttgacagaaaatctctgctt |
241 |
Q |
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|||||||||||| |||||||||||||||||||||||||||| |
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| T |
40104005 |
tttgggtaatttgtcataattttgacagaaaatctctgctt |
40103965 |
T |
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