View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11381_high_4 (Length: 612)

Name: NF11381_high_4
Description: NF11381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11381_high_4
NF11381_high_4
[»] chr8 (4 HSPs)
chr8 (19-594)||(1771249-1771824)
chr8 (57-244)||(1800419-1800606)
chr8 (57-243)||(1782640-1782826)
chr8 (164-252)||(1776205-1776293)
[»] chr1 (1 HSPs)
chr1 (174-246)||(19790003-19790075)


Alignment Details
Target: chr8 (Bit Score: 548; Significance: 0; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 548; E-Value: 0
Query Start/End: Original strand, 19 - 594
Target Start/End: Complemental strand, 1771824 - 1771249
Alignment:
Q  19 gtccctagtgagacctgtaccaatttataaagatgttgaactattgttgaaggatacaacagttaccaatgatagaaatggaagagtacctaaaattttt 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||    
T  1771824 gtccctagtgagacctgtaccaatttataaagatgttgaactattgttgaaggaaacaacagttaccaatgatagaaatggaagagtacctaaatttttt 1771725  T
Q  119 atcataagcaaaagtgataatttgataacagaggattttcaaatgtggatgattaagagaagtggtccatttgagaaggtggaagtgatagaggattctg 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1771724 atcataagcaaaagtgataatttgataacagaggattttcaaatgtggatgattaagagaagtggtccatttgagaaggtggaagtgatagaggattctg 1771625  T
Q  219 atcacatggtcatgttctctaaaccaaagaagcttagttccacccttctaaagattgcacgaaagtattaatccttaattttaatgtaatagtatatggt 318  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||    
T  1771624 atcacatggtcatgttgtctaaaccaaagaagcttagttccacccttctaaagattgtacaaaagtattaatccttaattttaatgtaatagtatatggt 1771525  T
Q  319 atttgtgcctatcacgtcccaaaaacaaaagaatatgggctggacttatatttcaattatgaataaatggagttatctgttgtttttacttcattctttt 418  Q
    |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1771524 atttgtgcatatcacgtcccaaaaacaaaagaataggggctggacttatatttcaattatgaataaatggagttatctgttgtttttacttcattctttt 1771425  T
Q  419 gtttcaacattaaggtgtttgttattcctctatttgatgtatagttgataatataatcatgtagtgtaattgtttcttaaatgttcttaactttcacaat 518  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1771424 gtttcaacattaaggtgtttgttattcctctatttgatgtatagttgataatataatcatgtagtgtaattgtttcttaaatgttcttaactttcacaat 1771325  T
Q  519 ctagtccttgcaccgcctccttgctcttctagggtttgttagggttttggtgtatagggttttatataatcagttt 594  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1771324 ctagtccttgcaccgcctccttgctcttctagggtttgttagggttttggtgtatagggttttatataatcagttt 1771249  T

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Target: chr8; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 57 - 244
Target Start/End: Complemental strand, 1800606 - 1800419
Alignment:
Q  57 aactattgttgaaggatacaacagttaccaatgatagaaatggaagagtacctaaaatttttatcataagcaaaagtgataatttgataacagaggattt 156  Q
    ||||||||||||| || |||| |||||||||  |||| |||||||| || ||||||   || ||||| ||||||   ||||||||| | |||||||||||    
T  1800606 aactattgttgaaagaaacaagagttaccaaacataggaatggaagggtgcctaaagccttcatcatcagcaaagaagataatttgttgacagaggattt 1800507  T
Q  157 tcaaatgtggatgattaagagaagtggtccatttgagaaggtggaagtgatagaggattctgatcacatggtcatgttctctaaacca 244  Q
    |||||| ||||||||| |||  | | |||||| ||   ||||| |||||||| ||||||| ||||||||||||||||| |||||||||    
T  1800506 tcaaatatggatgattgagaatactcgtccatatgttgaggtgaaagtgataaaggattcagatcacatggtcatgttttctaaacca 1800419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 57 - 243
Target Start/End: Complemental strand, 1782826 - 1782640
Alignment:
Q  57 aactattgttgaaggatacaacagttaccaatgatagaaatggaagagtacctaaaatttttatcataagcaaaagtgataatttgataacagaggattt 156  Q
    ||||| ||||||| || |||| |||||||||  | || |||||||| ||||| ||| | || || || |||||| | || ||| | || | ||||||| |    
T  1782826 aactagtgttgaaagaaacaagagttaccaagcagaggaatggaagggtaccaaaagtcttcattatcagcaaaggagacaatatcatcaaagaggatat 1782727  T
Q  157 tcaaatgtggatgattaagagaagtggtccatttgagaaggtggaagtgatagaggattctgatcacatggtcatgttctctaaacc 243  Q
     ||| | ||||| ||| |||||| |||||||| ||   | ||| |||||||| ||||||| ||||||||||||||||||||||||||    
T  1782726 gcaattatggataattgagagaactggtccatatgttgaagtgaaagtgataaaggattcagatcacatggtcatgttctctaaacc 1782640  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 164 - 252
Target Start/End: Complemental strand, 1776293 - 1776205
Alignment:
Q  164 tggatgattaagagaagtggtccatttgagaaggtggaagtgatagaggattctgatcacatggtcatgttctctaaaccaaagaagct 252  Q
    ||||| ||| |||||| |||||||| ||   | ||| |||||||| ||||||| ||||||||||| |||||||| ||||| || |||||    
T  1776293 tggataattgagagaactggtccatatgttgaagtgaaagtgataaaggattcagatcacatggttatgttctccaaacctaaaaagct 1776205  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 174 - 246
Target Start/End: Original strand, 19790003 - 19790075
Alignment:
Q  174 agagaagtggtccatttgagaaggtggaagtgatagaggattctgatcacatggtcatgttctctaaaccaaa 246  Q
    |||||| |||||||| ||   ||||| | |||||| ||||||| ||||| |||||||||||||| ||||||||    
T  19790003 agagaactggtccatatgttgaggtgaatgtgataaaggattcagatcaaatggtcatgttctccaaaccaaa 19790075  T

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