View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11381_low_1 (Length: 871)
Name: NF11381_low_1
Description: NF11381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11381_low_1 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 352; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 504 - 871
Target Start/End: Original strand, 19992766 - 19993133
Alignment:
| Q |
504 |
atcatttccaccctgagaagcaaaagtctcttttgtatattgtcctccatcctcttctttcttgtttgctaaaaactcaagagctgtaactacatcactg |
603 |
Q |
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| T |
19992766 |
atcatttccaccctgagaagcaaaagtctcttttgtatattgtcctccatcctcttctttcttgtttgctaaaaactcaagagctgtaactacatcactg |
19992865 |
T |
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| Q |
604 |
attaaaggcctagtatcagcttcctcttgcagacacatagctgcaagtgctagagcttgatattgaccctttatagggtacttatcttctagcaatggat |
703 |
Q |
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| T |
19992866 |
attaaaggcctagtatcagcttcctcttgcagacacatagctgcaattgctagagcttgatatagaccctttatagggtacttatcttctagcaatggat |
19992965 |
T |
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| Q |
704 |
ctgccatttgtgtgaatttctttctgtctcttagaagaggttgtgcctgaaaaagaagaaacatccatcataatgaataatgtgaatttctttccgtctc |
803 |
Q |
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| T |
19992966 |
ctgccatttgtgtgaatttctttctgtctcttagaagaggctgtgcctgaaaaagaagaaacatccatcataatgaataatgtgaatttctttctgtctc |
19993065 |
T |
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| Q |
804 |
ttatgatttttggtacataagaaaggtttgaagacttacccaaaggactaaattttgctcttctgatg |
871 |
Q |
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| T |
19993066 |
ttatgatttttggtacataagaaaggtttgaagacttacccaaaggactaaattttgctcttctgatg |
19993133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 19 - 354
Target Start/End: Original strand, 19992263 - 19992598
Alignment:
| Q |
19 |
gagttcaggcatgatcttttgattacagaacttgatgcaagaatgaatacaagcatgttaacccagccatcaagttcttattctcggatataagctaact |
118 |
Q |
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| T |
19992263 |
gagttcaggcatgatcttttgattacagaacttgatgcaagaatgaatacaagcatgttaacccagccatcaagttcttattctcggatataagctaact |
19992362 |
T |
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| Q |
119 |
gttgccatgcttgatatcctaacacaagccgtaagctgattcataaaattgaatggcattatattaggattgacaagtaggtattaaaaacttgaatttg |
218 |
Q |
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| T |
19992363 |
gttgccatgcttgatatcctaacacaagccgtaagctaattcataaaattgaatggcattatattaggattgacaagtaggtattaaaaacttgaatttg |
19992462 |
T |
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| Q |
219 |
ctataaatgaggtatagtttctatttccttgtgaaccatttaggtgctcaaactatgagtttgctannnnnnnnccaccattttcaatctgtattgggcc |
318 |
Q |
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| T |
19992463 |
ctataaatgaggtatagtttctatttccttgtgaaccatttaggtgctcaaactatgagtttgctattttttttccaccattttcaatctgtattgggcc |
19992562 |
T |
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| Q |
319 |
tgagctcggtccaaaacaaaattaattcactatctt |
354 |
Q |
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| T |
19992563 |
tgagctcggtccaaaacaaaattaattcactatctt |
19992598 |
T |
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