View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11381_low_10 (Length: 519)
Name: NF11381_low_10
Description: NF11381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11381_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 245; Significance: 1e-136; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 262
Target Start/End: Original strand, 34955680 - 34955943
Alignment:
| Q |
1 |
ctcataagcttaggtgacaatttctttccaaaagataaatggtgtatggcatgcgacatgttcatttgagaagcatcaaatgaatgggcatcggatcttg |
100 |
Q |
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| T |
34955680 |
ctcataagcttaggtgacaatttctttccaaaagataaatggtgtacggcatgcgacatgttcatttgagaagcatcaaatgaatgggcatcggatcttg |
34955779 |
T |
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| Q |
101 |
ctgagatgatcaagtttcctggaacctgcagagtgcaaaacagcttacgtttcggcataatatttaaaatac--agagaaaaataataggaagtcatatg |
198 |
Q |
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| T |
34955780 |
ctgagatgatcaagtttcctggaacctgcagagtgcaaaacagcttatgtttcggcataatatttaaaatacagagagaaaaataataggaagtcatatg |
34955879 |
T |
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| Q |
199 |
ccgtatattatatcatttatttctgctgttataatattgacaactgaagcttctattataatgc |
262 |
Q |
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| T |
34955880 |
ccgtatattatatcatttatttctgctgttataatattgacaactgaagcttctattataatgc |
34955943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 298 - 501
Target Start/End: Original strand, 34955979 - 34956182
Alignment:
| Q |
298 |
tcttggttcatactcacacctgaaaactaggaagcaacaaaagaagttttccacattacactagaattagaaggtaaattttatccgtatgcgagtttac |
397 |
Q |
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| T |
34955979 |
tcttggttcatactcacacctgaaaactaggaagcaacaaaagaagttttccacattacactagaattagaaggtaaattttatccgtatgcgagtttac |
34956078 |
T |
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| Q |
398 |
cttcttgacacgtacatatccttcaattctacatcccccggatgacggtgctggtctttttgaatcctctgtaacatttaatttatcctccaaagctagc |
497 |
Q |
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| T |
34956079 |
cttcttgacacgtacatatccttcaattctacatcccccggatgacggtgctggtctttttgaatcctctgtaacatttaatttatcctccaaagctagc |
34956178 |
T |
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| Q |
498 |
ttat |
501 |
Q |
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|||| |
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| T |
34956179 |
ttat |
34956182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 11 - 130
Target Start/End: Complemental strand, 31391785 - 31391666
Alignment:
| Q |
11 |
taggtgacaatttctttccaaaagataaatggtgtatggcatgcgacatgttcatttgagaagcatcaaatgaatgggcatcggatcttgctgagatgat |
110 |
Q |
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|||||| || ||| ||||||||||||| ||||| ||| |||| |||||||||||||||||||||||||||||||| ||||| ||||| ||||||| | |
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| T |
31391785 |
taggtgtcactttttttccaaaagatagatggttgatgacatgtgacatgttcatttgagaagcatcaaatgaatgtgcatctgatctagctgagacaac |
31391686 |
T |
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| Q |
111 |
caagtttcctggaacctgca |
130 |
Q |
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| T |
31391685 |
caagcttcctggaacctgca |
31391666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 389 - 459
Target Start/End: Complemental strand, 31391327 - 31391257
Alignment:
| Q |
389 |
cgagtttaccttcttgacacgtacatatccttcaattctacatcccccggatgacggtgctggtctttttg |
459 |
Q |
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|||||||||||| || ||||| |||||||| |||| ||||||||| |||| |||||||||||||||||||| |
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| T |
31391327 |
cgagtttacctttttcacacgcacatatccctcaactctacatccaccggttgacggtgctggtctttttg |
31391257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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