View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11381_low_11 (Length: 515)
Name: NF11381_low_11
Description: NF11381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11381_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 3 - 281
Target Start/End: Original strand, 23675395 - 23675673
Alignment:
| Q |
3 |
agaaagaaggaaatgaccaatatcattgatcattatattcaaaccgtagaatttaatggaaattcaatgagcaaatatgatcttaatgatttttcatctt |
102 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23675395 |
agaaagaaggaaatgaccaatatcattgatcattatattcaaaccgtagaatttaatggaaattcaatgagcaaatatgatcttaatgatttttcatctt |
23675494 |
T |
|
| Q |
103 |
ttattgatgagaatttgaaggaggttgatcggaagatgaaagaaatgacaattaaagatcaagaggaggttggaaatgaggtgggattatgaataggaca |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
23675495 |
ttattgatgagaatttgaaggaggttgatcggaagatgaaagaaatgacaattaaagatcaagacgaggttggaaatgaggtgggattatgaataggaca |
23675594 |
T |
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| Q |
203 |
aaggagtcggaaaatactagttatgaannnnnnnnctttatcttttgttgtgtaatatggagtcttttctccactatca |
281 |
Q |
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| T |
23675595 |
aaggagtcggaaaatactagttatgaattttttttctttatcttttgttgtgtaatatggagtcttttctccactatca |
23675673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 363 - 495
Target Start/End: Original strand, 23675754 - 23675886
Alignment:
| Q |
363 |
aagttatgtttacttttaaactattgatgatgatcaatggaataaatagagactttgttttgtgatctccaaatgatcggtataagagtttatttatgca |
462 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23675754 |
aagttatgtttacttttaaactattgatgatgatcaatggaataaatagagattttgttttgtgatctccaaatgatcggtataagagtttatttatgca |
23675853 |
T |
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| Q |
463 |
agcctatacacttgactcaaacccacatgaaaa |
495 |
Q |
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| T |
23675854 |
agcctatacacttgactcaaacccacatgaaaa |
23675886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 167; Significance: 3e-89; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 3 - 229
Target Start/End: Complemental strand, 26458073 - 26457847
Alignment:
| Q |
3 |
agaaagaaggaaatgaccaatatcattgatcattatattcaaaccgtagaatttaatggaaattcaatgagcaaatatgatcttaatgatttttcatctt |
102 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| |||||| |||||||||||||||| |
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| T |
26458073 |
agaaagatggaaatgaccaatatcattgatcattatattcaaaccatagaatttaatggaaattcgatgagcaaatctgatctcaatgatttttcatctt |
26457974 |
T |
|
| Q |
103 |
ttattgatgagaatttgaaggaggttgatcggaagatgaaagaaatgacaattaaagatcaagaggaggttggaaatgaggtgggattatgaataggaca |
202 |
Q |
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|||||||||||||||||||||||||| ||| ||||||||||||||||||||| ||||||||| ||||||||||||||| |||||||||||||||||||| |
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| T |
26457973 |
ttattgatgagaatttgaaggaggttaatctgaagatgaaagaaatgacaatcaaagatcaaaaggaggttggaaatggggtgggattatgaataggact |
26457874 |
T |
|
| Q |
203 |
aaggagtcggaaaatactagttatgaa |
229 |
Q |
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||||| || |||||||||||| |||| |
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| T |
26457873 |
aaggatccgaaaaatactagttttgaa |
26457847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 363 - 495
Target Start/End: Complemental strand, 26457709 - 26457577
Alignment:
| Q |
363 |
aagttatgtttacttttaaactattgatgatgatcaatggaataaatagagactttgttttgtgatctccaaatgatcggtataagagtttatttatgca |
462 |
Q |
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|||||||||||||||||||| || |||||| |||||||||||| ||||| | ||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
26457709 |
aagttatgtttacttttaaattaccgatgataatcaatggaatacatagacaatttgttttgtgatctccaaatgatcggtataagagttcatttatgca |
26457610 |
T |
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| Q |
463 |
agcctatacacttgactcaaacccacatgaaaa |
495 |
Q |
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||| |||||||||||||||||||||| ||||| |
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| T |
26457609 |
agctcatacacttgactcaaacccacacgaaaa |
26457577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 3 - 180
Target Start/End: Original strand, 27641169 - 27641346
Alignment:
| Q |
3 |
agaaagaaggaaatgaccaatatcattgatcattatattcaaaccgtagaatttaatggaaattcaatgagcaaatatgatcttaatgatttttcatctt |
102 |
Q |
| |
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||||||||||||||||||||||||||| |||||| ||||| ||| ||||||||||||| ||| |||||||||| ||||||||||||||| || | | |
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| T |
27641169 |
agaaagaaggaaatgaccaatatcattcatcatttcattcataccacagaatttaatggatatttaatgagcaaacctgatcttaatgatttgtcctatg |
27641268 |
T |
|
| Q |
103 |
ttattgatgagaatttgaaggaggttgatcggaagatgaaagaaatgacaattaaagatcaagaggaggttggaaatg |
180 |
Q |
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|||||||||||||||||| |||||| ||| |||||||||| |||| |||| ||||| ||||||||||||||||| |
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| T |
27641269 |
ttattgatgagaatttgagggaggtcaatcaaaagatgaaaggaatgcgaattgaagattgagaggaggttggaaatg |
27641346 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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