View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11381_low_12 (Length: 487)
Name: NF11381_low_12
Description: NF11381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11381_low_12 |
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Alignment Details
Target: chr6 (Bit Score: 172; Significance: 3e-92; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 247 - 467
Target Start/End: Complemental strand, 7344082 - 7343871
Alignment:
| Q |
247 |
ttagtgttatagtaggttgaaacatacttatattgtgacatttaaaaatcaatatagatagcaaaatatgtcaaaatctgggtagaacgttaccaaacca |
346 |
Q |
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| T |
7344082 |
ttagtgttatagtaggttgaaacatacttatattgtgacattttaaaatcaatatagatagcaaaatatgtcaaaatctgggtagaacgttaccaaacca |
7343983 |
T |
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| Q |
347 |
ataacttagtagcagtaaccaaatgaatctgttctacacatagttcgtggattgaggaaccatagtctttactcatatagttacaaatcatatcttaaag |
446 |
Q |
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| T |
7343982 |
ataacttagtagtagtaaccaaatgaatctgttctacacatagttagtggattgaggaaccatagtctttactcatatagtta--------atctt-aag |
7343892 |
T |
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| Q |
447 |
agttaagactatataggttct |
467 |
Q |
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| T |
7343891 |
agttaagactatataggttct |
7343871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 7345061 - 7344832
Alignment:
| Q |
1 |
tactttctttcaatcaattcgtctttggtacaactcattaacacttgaactcaattgcttggttaatggattatttatttcatattttcggactaatatt |
100 |
Q |
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| T |
7345061 |
tactttctttcaatcgattcgtctttggtacaactcattaa-----------aattgcttggttaataggttatttatttcatatttccagactaatatt |
7344973 |
T |
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| Q |
101 |
tttatatttaattccaatgatgagcgatatttgctcttttaatgcttcataaaagcgattccctgtttttactactgtgaacagcaacattcttnnnnnn |
200 |
Q |
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| T |
7344972 |
tttatatttaattccaatgatgagcgatatttgctcttttaatgcttcataaaagcgattcactgtttttactactgtgaacaacaacattcttaaaaaa |
7344873 |
T |
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| Q |
201 |
ncattctttcattgggggaaaaaacattcatcccctatgac |
241 |
Q |
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| T |
7344872 |
acattctttctttgggggaaaaaacattcatcccctatgac |
7344832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 67
Target Start/End: Original strand, 36018028 - 36018078
Alignment:
| Q |
18 |
ttcgtctttggtacaactcattaac-acttgaactcaattgcttggttaat |
67 |
Q |
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| T |
36018028 |
ttcgtctttggtcaaactcattaaccacttgaactcaattgcttagttaat |
36018078 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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