View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11381_low_13 (Length: 443)
Name: NF11381_low_13
Description: NF11381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11381_low_13 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 377; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 11 - 427
Target Start/End: Complemental strand, 12195554 - 12195136
Alignment:
| Q |
11 |
cataggtttccatatcacaactgccaccactgtagacagtcacaagaatgaaacatataagcacacgtaacaactcaaaatactctgaaaactaacatca |
110 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
12195554 |
catacgtttccatatcacaactgccaccactgtagacagtcacaagaatgaaacatataagcacacgtaacaactcaaaatactgtgaaaactaacatca |
12195455 |
T |
|
| Q |
111 |
cacataagccaaaatttcaaatagttttaaaacagataaactaagtctataacatacaaaaacacttgcatgccagttctcaatgaacgaggaaccaata |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12195454 |
cacataagccaaaatttcaaatagttttaaaacagataaactaagtctataacatacaaaaacacttgcatgccagttctcaatgaacgaggaaccaata |
12195355 |
T |
|
| Q |
211 |
cgaatgaaacccaacacacagattacactaacatatcaactttaccaatcttattgaataaatatacaaagcatggacatggacacagacactgacatgt |
310 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
12195354 |
cgaatgaaacccaa--cacagattacactaacatatcaactttaccaatcttattaaataaatatacaaagcatggacacggacacagacactgacatgt |
12195257 |
T |
|
| Q |
311 |
cggccccgataataatttgagaagataatataattcagggtaataacatgcagatacactcgcatgacagttctcaatgaatgaatgaaacag----gtg |
406 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
12195256 |
cggccccgataataatttgagaagataatataattcagggtaataacatgcagatacactcgcatgacagttctcaatgaatgaatgaaacagtacagtg |
12195157 |
T |
|
| Q |
407 |
aagcccaacaaacattacact |
427 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
12195156 |
aagcccaacaaacattacact |
12195136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 146; E-Value: 9e-77
Query Start/End: Original strand, 16 - 391
Target Start/End: Complemental strand, 12290408 - 12290024
Alignment:
| Q |
16 |
gtttccatatcacaactgccaccactgtagacagtcacaagaatgaaacatataagcacacgtaacaactcaaaa--tactctgaaaactaacatcacac |
113 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||| ||||||||||||| |||| | ||| ||||||||||| |
|
|
| T |
12290408 |
gtttccatatcacaactgccgacactgtagacagtcacaagaataaaacatataagcacacataacaactcaaaaattactgtagaaaataacatcacac |
12290309 |
T |
|
| Q |
114 |
ataagccaaaatttcaaatagttttaaaacagataaactaa------------gtctataacatacaaaaacacttgcatgccagttctcaatgaacgag |
201 |
Q |
| |
|
|| | |||||||| | ||||| |||||||||||||||| ||||||||||| |||| |||| |||||||| ||||||||||| | | |
|
|
| T |
12290308 |
gtagacaaaaatttccagtagtta-aaaacagataaactaaactgcaatgcaagtctataacatggaaaagcactcgcatgccaattctcaatgaatgcg |
12290210 |
T |
|
| Q |
202 |
gaaccaatacgaatgaaacccaacacacagattacactaacatatcaactttaccaatcttattgaataaatatacaaagcatggacatggacaca-gac |
300 |
Q |
| |
|
|||||||||| |||||| ||||||| | ||||||||||||||||||||||||||||||||||| |||||| |||||||||||| || |||||| ||| |
|
|
| T |
12290209 |
gaaccaatacaaatgaagcccaacaaa--gattacactaacatatcaactttaccaatcttattcaataaagttacaaagcatgggcacagacacaggac |
12290112 |
T |
|
| Q |
301 |
actgacatgtcggccccgataataatttgagaagataatataattcagggtaataacatgcagatacactcgcatgacagttctcaatgaa |
391 |
Q |
| |
|
|||||||||||| || |||||||| ||| ||||||||| ||||||||||||||||||||||| |||||| |||| |||||||||||||| |
|
|
| T |
12290111 |
actgacatgtcgacctcgataatatttt---aagataataaaattcagggtaataacatgcagaaacactcacatggcagttctcaatgaa |
12290024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 232 - 265
Target Start/End: Complemental strand, 12195143 - 12195110
Alignment:
| Q |
232 |
attacactaacatatcaactttaccaatcttatt |
265 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
12195143 |
attacactaacatatcaactttaccaatcttatt |
12195110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 159 - 265
Target Start/End: Complemental strand, 12290062 - 12289958
Alignment:
| Q |
159 |
ataacatacaaaaacacttgcatgccagttctcaatgaacga-ggaaccaatacgaatgaaacccaacacacagattacactaacatatcaactttacca |
257 |
Q |
| |
|
||||||| || ||||||| |||| ||||||||||||||| | |||| ||||| |||||| ||||| | ||| |||||||||||| |||||||||||| |
|
|
| T |
12290062 |
ataacatgcagaaacactcacatggcagttctcaatgaacaaaggaatgaatac-aatgaagcccaataaaca--ttacactaacatgtcaactttacca |
12289966 |
T |
|
| Q |
258 |
atcttatt |
265 |
Q |
| |
|
|||||||| |
|
|
| T |
12289965 |
atcttatt |
12289958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 298 - 354
Target Start/End: Original strand, 40783943 - 40783999
Alignment:
| Q |
298 |
gacactgacatgtcggccccgataataatttgagaagataatataattcagggtaat |
354 |
Q |
| |
|
||||| ||||||||| | ||||||||||||||||| |||| ||||||||| ||||| |
|
|
| T |
40783943 |
gacaccgacatgtcgacgccgataataatttgagataataacataattcagcgtaat |
40783999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University