View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11381_low_14 (Length: 440)
Name: NF11381_low_14
Description: NF11381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11381_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 165; Significance: 4e-88; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 1 - 189
Target Start/End: Complemental strand, 53539453 - 53539265
Alignment:
| Q |
1 |
ttgcagcaaagatgtagaaaaatgttttagaatattgtggtcaggtaggatagagaactaaatattggtagcagcaaaatgttaaatgctaaattatgac |
100 |
Q |
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| T |
53539453 |
ttgcagcaaagatgtagaactatgttttagaatattgtggtcaggtaggatagagaactgaatattggtagcaggaaaatgttaaatgctaagttatgac |
53539354 |
T |
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| Q |
101 |
attggttaaatagactatccttgagcactgcaataatcaatgtctacacaaccataataaactaaacagtcatggtggatcttttaatg |
189 |
Q |
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| T |
53539353 |
attggttaaatagactattcttgagcactgcaataatcaatgtctacacaaccataataaactaaacagtcatggtggatcttttaatg |
53539265 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 153; Significance: 6e-81; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 218 - 426
Target Start/End: Original strand, 10603861 - 10604069
Alignment:
| Q |
218 |
aaacattcaaaacctgataaactcaagtgaccaagttacatgtcgtgatgcaccattaactatattttcttattgccatgatttatnnnnnnnnnnnnnn |
317 |
Q |
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| T |
10603861 |
aaacattcaaaacctgataaactcaagtgaccaagttacatgtcgtgatgcaccattaactatattttcttattgccatgatttattaaaaaaaaaaaaa |
10603960 |
T |
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| Q |
318 |
nncctttcatactttgtaacacttcctatttttcatataatataatctcaatagtatcacattgccagccagtttcaactcttgttaacatttgtttaat |
417 |
Q |
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| T |
10603961 |
aaactttcatactttgtaacacttcctatttttcatataatataatctcaatagtatcacattgctagccagtttcaactcttgttaacatttgtttaat |
10604060 |
T |
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| Q |
418 |
ttttatatt |
426 |
Q |
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| T |
10604061 |
ttttatatt |
10604069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 218 - 411
Target Start/End: Original strand, 10611980 - 10612164
Alignment:
| Q |
218 |
aaacattcaaaacctgataaactcaagtgaccaagttacatgtcgtgatgcaccattaactatattttcttattgccatgatttatnnnnnnnnnnnnnn |
317 |
Q |
| |
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||||||||| ||||||||||||| |||| |||||||| ||||| ||||||||||||| |||||||| ||||||||||| |||| |
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| T |
10611980 |
aaacattcagaacctgataaacttaagtaaccaagtttcatgtaatgatgcaccattatctatatttgtttattgccatggttta----------aaaaa |
10612069 |
T |
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| Q |
318 |
nncctttcatactttgtaacacttcctatttttc-atataatataatctcaatagtatcacattgccagccagtttcaactcttgttaacatttg |
411 |
Q |
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||||||||||||||| || |||| |||||| |||||||||||||||| ||| |||||| |||||||| |||||||||||||||| ||||| |
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| T |
10612070 |
aacctttcatactttgtgggacatcctgtttttcgatataatataatctcatcagtgtcacatggccagccaatttcaactcttgttaaaatttg |
10612164 |
T |
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