View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11381_low_15 (Length: 439)
Name: NF11381_low_15
Description: NF11381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11381_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 43 - 431
Target Start/End: Original strand, 45345421 - 45345813
Alignment:
| Q |
43 |
gcactgctttcaatttattgtgacacagtgaacctcaattagaattccccgggtcccaaatgcaaataatgcaatcaagggaaacggcaaacaagaatat |
142 |
Q |
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| T |
45345421 |
gcactgctttcaatttattgtgacacagtgaacctcaattagaattccccgggtcccaaatgcaaataatgcaatcaagggaaacggcaaacaagaatat |
45345520 |
T |
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| Q |
143 |
acttttttaacaagattaactataatctaatgtttgttaaaaccacgtgtannnnnnnnnnnnnnnactttatgatattcgtgctatcaccaaccataac |
242 |
Q |
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| T |
45345521 |
acttttttaacaagattgactataatctaatgtttgttaaaaccacgtgtattttttattttttttactttatgatattcgtgctatcaccaaccataac |
45345620 |
T |
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| Q |
243 |
attcaaatggattcttagctttgtc---nnnnnnnnnnggattcttagtagaattttttatatgaacataccttcctaaataattcagtgcaacattacc |
339 |
Q |
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| T |
45345621 |
attcaaatggattcttagctttgtcaaaaaaaaaaaatggattcttagtagaattttttatatgaacataccttcctaaataattcagtgcaacattacc |
45345720 |
T |
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| Q |
340 |
ccttcttccaagtatatgcatgactatctctttgctatattttagtatttttcttaccac-tttttcatcaaaatgaatgccccccttccttt |
431 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
45345721 |
ccttcttccaagtatatgcatgactatctctttgctatattttagtatttttcttaccacttttttcatcaaaatgaatgccccccttccttt |
45345813 |
T |
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