View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11381_low_16 (Length: 424)
Name: NF11381_low_16
Description: NF11381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11381_low_16 |
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Alignment Details
Target: chr7 (Bit Score: 135; Significance: 3e-70; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 200 - 406
Target Start/End: Original strand, 25945017 - 25945230
Alignment:
| Q |
200 |
cactacgcaaccctacttaagcttgagctaccgtcgctcttcacggtgcgtttcctttctcactcttccatatcgccgtacgctttcaatattcatcaac |
299 |
Q |
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| T |
25945017 |
cactacgcaaccctacttaagcttgagctaccgtcgctcttcacggtgcgtttcctttctaacttttccatatcgccgtacgctttcaatattcattatc |
25945116 |
T |
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| Q |
300 |
tttttcaattttcacccttttcttgttcaacaagttttcaaattaactttc-ccaccataa------tttggtgttttgaattttcagtttattcttcta |
392 |
Q |
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| T |
25945117 |
ttaatcaattttcacccttttcttgttcaacaagttttcatattaacttccactactaaaatcgttttttggtgttttgaattttcattttattcttcta |
25945216 |
T |
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| Q |
393 |
gcctttagaggaag |
406 |
Q |
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| T |
25945217 |
gcctttagaggaag |
25945230 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 83 - 147
Target Start/End: Original strand, 25944900 - 25944964
Alignment:
| Q |
83 |
ggtatatcaattgtttgttacactaaaaagataatgagtttaaaaaattaagattttatccgtgg |
147 |
Q |
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| T |
25944900 |
ggtatatcaattgtttgttacactaaaaagataatgagtttaaaaaattaagattttatccgtgg |
25944964 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 243 - 293
Target Start/End: Original strand, 25951188 - 25951238
Alignment:
| Q |
243 |
cggtgcgtttcctttctcactcttccatatcgccgtacgctttcaatattc |
293 |
Q |
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| T |
25951188 |
cggtgcgtttcctttctcacttttccatatcgccgtacactttcaatattc |
25951238 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 91 - 140
Target Start/End: Original strand, 25950762 - 25950811
Alignment:
| Q |
91 |
aattgtttgttacactaaaaagataatgagtttaaaaaattaagatttta |
140 |
Q |
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| T |
25950762 |
aattgtttgttatactaaaaagataatgagtttaaaaaattaagaattta |
25950811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 370 - 401
Target Start/End: Original strand, 25951311 - 25951342
Alignment:
| Q |
370 |
tgaattttcagtttattcttctagcctttaga |
401 |
Q |
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| T |
25951311 |
tgaattttcagtttattcttctagcctttaga |
25951342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 71
Target Start/End: Original strand, 25944827 - 25944882
Alignment:
| Q |
12 |
agagatagagtgcgagcaaaaaacaaaagagtttgtcagaagaagagagtatatcaattg |
71 |
Q |
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| T |
25944827 |
agagatagagtgcgaggaaaa-acaaaagagtttgt---tagaagagagtatatcaattg |
25944882 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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