View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11381_low_18 (Length: 405)
Name: NF11381_low_18
Description: NF11381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11381_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 21 - 391
Target Start/End: Complemental strand, 1249936 - 1249567
Alignment:
| Q |
21 |
tccagcggcagagagcggccaggtagtgtcatttagagggatgaaaagcatgataacataaataattgtgaaaaataatcacctccataatgagtctata |
120 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1249936 |
tccagcggcagagagcggccaggtagtgtcatttagagg-atgaaaagcctgataacataaataattgtgaaaaataatcacctccataatgagtctata |
1249838 |
T |
|
| Q |
121 |
atctcccctttcatgacatgttgttgaagcaataaaggtacatcctctggggcaacatatccatacctggttatatcagttgaatataatataggtcaga |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1249837 |
atctcccctttcatgacatgttgttgaagcaataaaggtacatcctctggggcaacatatccatacctggttatatcagttgaatataatataggtcaga |
1249738 |
T |
|
| Q |
221 |
tgaataatcaatatggtaaacaacggtaattccacatttaaacaattaaacagaaagttcttgagataaagaattttgataaccgagcaggtcttctcct |
320 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1249737 |
tgaataatcaatatggtaaacaacggtatttccacatttaaactattaaacagaaagttcttgagataaagaattttgataaccgagcaggtcttctcct |
1249638 |
T |
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| Q |
321 |
taccaatgtccagtgacttctccattcatgcttgatccaaatataatgacatttcctgcatactgatgtcc |
391 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
1249637 |
taccaatgtccagtgacttctccattcatgcttgatccaaatataatgacatttcctgcatacttatgtcc |
1249567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 17 - 391
Target Start/End: Complemental strand, 42016720 - 42016347
Alignment:
| Q |
17 |
aaaatccagcggcagagagcggccaggtagtgtcatttagagggatgaaaagcatgataacataaataattgtgaaaaataatcacctccataatgagtc |
116 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42016720 |
aaaatccaacggcagagagcggccaggtagtgtcatttagagg-atgaaaagcctgataacataaataattgtgaaaaataatcacctccataatgagtc |
42016622 |
T |
|
| Q |
117 |
tataatctcccctttcatgacatgttgttgaagcaataaaggtacatcctctggggcaacatatccatacctggttatatcagttgaatataatataggt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42016621 |
tataatctcccctttcatgacatgttgttgaagcaataaaggtacatcctctggggcaacatatccatacctggttatatcagttgaatataatataggt |
42016522 |
T |
|
| Q |
217 |
cagatgaataatcaatatggtaaacaacggtaattccacatttaaacaattaaacagaaagttcttgagataaagaattttgataaccgagcaggtcttc |
316 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
42016521 |
cagatgaataatcaatatggtaaacaacggtatttccacatttaaactattaaacagaaagttcttgagataaagagttttgataaccgagcaggtcttc |
42016422 |
T |
|
| Q |
317 |
tccttaccaatgtccagtgacttctccattcatgcttgatccaaatataatgacatttcctgcatactgatgtcc |
391 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
42016421 |
tccttaccaatgtccagtgacttctccattcatgcttgatccaaatataatgacatttcctgcatacttatgtcc |
42016347 |
T |
|
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