View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11381_low_19 (Length: 398)
Name: NF11381_low_19
Description: NF11381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11381_low_19 |
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Alignment Details
Target: chr6 (Bit Score: 122; Significance: 2e-62; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 76 - 206
Target Start/End: Complemental strand, 32241592 - 32241460
Alignment:
| Q |
76 |
caattataaaccaccactct--ctcttttaatttcttcacttcatgatctctatgatcttcatcattttataagcttcaaataaataagttatcatcaac |
173 |
Q |
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| T |
32241592 |
caattataaaccaccactctttctcttttaatttcttcacttcatgatctctatgatcttcatcattttataagcttcaaataaataagttatcatcaac |
32241493 |
T |
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| Q |
174 |
aatatttctctctttgtgatttattttttctct |
206 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
32241492 |
aatatttctctctttgtgatttattttttctct |
32241460 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 235 - 312
Target Start/End: Complemental strand, 32241428 - 32241351
Alignment:
| Q |
235 |
ttaagggtattcatcaaagagcttgcaattcaatctatgatattggattaacatatatattaaggtacttgctcttcc |
312 |
Q |
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|||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32241428 |
ttaagggtgttcatcaatgagcttgcaattcaatctatgatattggattaacatatatattaaggtacttgctcttcc |
32241351 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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