View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11381_low_2 (Length: 722)
Name: NF11381_low_2
Description: NF11381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11381_low_2 |
 | |
|
| [»] scaffold0159 (3 HSPs) |
| | |
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Alignment Details
Target: chr6 (Bit Score: 678; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 678; E-Value: 0
Query Start/End: Original strand, 1 - 702
Target Start/End: Complemental strand, 29328147 - 29327446
Alignment:
| Q |
1 |
catgtacgggaaaaaatgttctggaccagcgaaacaaggtgttcgctcggggcttgttagtggtgtaggatttggtttatcttttttaattctatattgc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29328147 |
catgtacgggaaaaaatgttctggaccagcgaaacaaggtgttcgctcggggcttgttagtggtgtaggatttggtttatcttttttaattctatattgc |
29328048 |
T |
|
| Q |
101 |
acaaatgctttcatcttctacataggatctattttagtgcatcacaggaaagcaacgtttgtagaaattttcagggtacagacgattttacaatcaccta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
29328047 |
acaaatgctttcatcttctacataggatctattttagtgcatcacaggaaagcaacgtttgtagaaattttcagggtacagatgattttacaatcaccta |
29327948 |
T |
|
| Q |
201 |
acttggcttaatttatatttactcaatgtttcctttgatctggttcttacaaaataaattatgcaggttttctttagtttgacaatgacagcaatgtccg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
29327947 |
acttggcttaatttatatttactcaatgtttcctttaatctggttcttacaaaataaattatgcaggttttctttagtttgacaatgacagcaatgtctg |
29327848 |
T |
|
| Q |
301 |
tttcccagtcttctacattgtttcccgacactaacaaggccatagattccgcagcttcaatatttaacattcttgacagcaaacctgatattgattccag |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29327847 |
tttcccagtcttctacattgtttcccgacactaacaaggccatagattccgcagcttcaatatttaacattcttgacagcaaacctgatattgattccag |
29327748 |
T |
|
| Q |
401 |
cagcaataatggtgtaacacaagaaactgtcgttggcaacatcgaacttcaacacgtcaactttagttacccaacaagacccgacattcaaattttcaaa |
500 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29327747 |
cagcaatgatggtgtaacacaagaaactgtcgttggcaacatcgaacttcaacacgtcaactttagttacccaacaagacccgacattcaaattttcaaa |
29327648 |
T |
|
| Q |
501 |
gatttaaccctaagcatcccatctgcaaaggtaaacttttagttctacaaatcagtattgagaatgtgtaaagtatgtatttaaattgatgatatatgta |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29327647 |
gatttaaccctaagcatcccatctgcaaaggtaaacttttagttctacaaatcagtattgagaatgtgtaaagtatgtatttaaattgatgatatatgta |
29327548 |
T |
|
| Q |
601 |
tgtctttgcagactgttgctttgattggagaaagcggcagtggaaaatcaacagttagcagcctcttagagagattttatgaccctaattccggacgcgt |
700 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29327547 |
tgtctttgcagactgttgctttggttggagaaagcggcagtggaaaatcaacagttatcagcctcttagagagattttatgaccctaattccggacgcgt |
29327448 |
T |
|
| Q |
701 |
at |
702 |
Q |
| |
|
|| |
|
|
| T |
29327447 |
at |
29327446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 265; Significance: 1e-147; HSPs: 9)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 1 - 697
Target Start/End: Complemental strand, 5830620 - 5829937
Alignment:
| Q |
1 |
catgtacgggaaaaaatgttctggaccagcgaaacaaggtgttcgctcggggcttgttagtggtgtaggatttggtttatcttttttaattctatattgc |
100 |
Q |
| |
|
||||||| | |||||||||| || |||||||||||||| ||||||| |||||||||||||||| |||||||||| | || |||||| ||||||||||| |
|
|
| T |
5830620 |
catgtacagtaaaaaatgtttaggcccagcgaaacaaggagttcgcttggggcttgttagtggtataggatttggctgctcgtttttagttctatattgc |
5830521 |
T |
|
| Q |
101 |
acaaatgctttcatcttctacataggatctattttagtgcatcacaggaaagcaacgtttgtagaaattttcagggtacagacgattttacaatcaccta |
200 |
Q |
| |
|
|||||||||||||| || |||||||||||| || ||||||| ||| | |||||||| ||| |||| ||||||||||||| || || ||| | | |
|
|
| T |
5830520 |
acaaatgctttcattttttacataggatctgttctagtgcaacacggcaaagcaacttttacagaagttttcagggtaca----at----cactcaacca |
5830429 |
T |
|
| Q |
201 |
acttggcttaatttatatttactca-atgtttcctttgatctggttcttacaaaataaattatgcaggttttctttagtttgacaatgacagcaatgtcc |
299 |
Q |
| |
|
|||| || | |||||||||||| |||||| |||||||| |||||||||| |||| |||| |||||||||||| ||| |||||||| ||||| || |
|
|
| T |
5830428 |
acttagcatgctttatatttacttttatgtttattttgatctagttcttacaagataatttatacaggttttctttgctttaacaatgacggcaatcgcc |
5830329 |
T |
|
| Q |
300 |
gtttcccagtcttctacattgtttcccgacactaacaaggccatagattccgcagcttcaatatttaacattcttgacagcaaacctgatattgattcca |
399 |
Q |
| |
|
||||| ||| | |||||||| || |||||||||||||||| |||||| ||||||||||||||| | ||| ||||||||||||||||||||||||||| |
|
|
| T |
5830328 |
gtttcgcagacgactacattggcaccagacactaacaaggccaaagattctgcagcttcaatatttgaaattattgacagcaaacctgatattgattcca |
5830229 |
T |
|
| Q |
400 |
gcagcaataatggtgtaacacaagaaactgtcgttggcaacatcgaacttcaacacgtcaactttagttacccaacaagacccgacattcaaattttcaa |
499 |
Q |
| |
|
|||||||| |||||||||| |||||| || ||||| | || ||||||||||| |||||||||| |||||||||||| |||||||||||||||||||| |
|
|
| T |
5830228 |
gcagcaatgcgggtgtaacacgagaaacagtagttggtgatattgaacttcaacatgtcaactttaattacccaacaaggcccgacattcaaattttcaa |
5830129 |
T |
|
| Q |
500 |
agatttaaccctaagcatcccatctgcaaaggtaaacttttagttctacaaatc--agtattgagaatgtgtaaagtatgtatttaaattgatgatatat |
597 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| |||| ||| |||||| | | |||||||| |||| |||||||||||||||||||| |
|
|
| T |
5830128 |
agatttaagcctaagcatcccatctgcaaaggtaatgttttggttgtacaaacccatttgttgagaatatgta----atgtatttaaattgatgata--- |
5830036 |
T |
|
| Q |
598 |
gtatgtctttgcagactgttgctttgattggagaaagcggcagtggaaaatcaacagttagcagcctcttagagagattttatgaccctaattccggacg |
697 |
Q |
| |
|
|||||||||||||||| |||| ||| |||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
5830035 |
-tatgtctttgcagactattgccttggttggagaaagtggcagtggaaaatcaacagttatcagcctcttagagagattttatgaccctaattctggacg |
5829937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 259 - 506
Target Start/End: Original strand, 5768058 - 5768305
Alignment:
| Q |
259 |
ttatgcaggttttctttagtttgacaatgacagcaatgtccgtttcccagtcttctacattgtttcccgacactaacaaggccatagattccgcagcttc |
358 |
Q |
| |
|
|||||||||||||||||||||| || || |||||| | | |||| |||||| ||| ||| ||||||||||| ||||||| |||||| |||||||| |
|
|
| T |
5768058 |
ttatgcaggttttctttagtttaactataacagcagtaggcatttcacagtctagtaccttggcacccgacactaataaggccaaagattctgcagcttc |
5768157 |
T |
|
| Q |
359 |
aatatttaacattcttgacagcaaacctgatattgattccagcagcaataatggtgtaacacaagaaactgtcgttggcaacatcgaacttcaacacgtc |
458 |
Q |
| |
|
||||||| | ||||| ||||| || ||| ||| || |||||||||||| | ||||| ||| |||||| ||| ||| | || ||||||||||| ||| |
|
|
| T |
5768158 |
aatatttgaaattctagacagtaaccctactatcgactccagcagcaatgaaggtgtcacattagaaacagtcacaggcgatattgaacttcaacatgtc |
5768257 |
T |
|
| Q |
459 |
aactttagttacccaacaagacccgacattcaaattttcaaagattta |
506 |
Q |
| |
|
| ||| | ||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
5768258 |
agcttcaattacccaacaagacctcacattcaaattttcaaagattta |
5768305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 610 - 686
Target Start/End: Original strand, 5768424 - 5768500
Alignment:
| Q |
610 |
agactgttgctttgattggagaaagcggcagtggaaaatcaacagttagcagcctcttagagagattttatgaccct |
686 |
Q |
| |
|
|||||||||||||| |||||||||| |||||||||||||||||||||| || |||||||||||||||||| ||||| |
|
|
| T |
5768424 |
agactgttgctttggttggagaaagtggcagtggaaaatcaacagttataagtctcttagagagattttataaccct |
5768500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 610 - 696
Target Start/End: Original strand, 5826877 - 5826963
Alignment:
| Q |
610 |
agactgttgctttgattggagaaagcggcagtggaaaatcaacagttagcagcctcttagagagattttatgaccctaattccggac |
696 |
Q |
| |
|
|||||||||| ||| |||||||||| |||||||||||||||||||||| || ||||| |||||||||||| ||||| |||| |||| |
|
|
| T |
5826877 |
agactgttgccttggttggagaaagtggcagtggaaaatcaacagttataagtctcttggagagattttataaccctgattctggac |
5826963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 10 - 129
Target Start/End: Original strand, 5825941 - 5826060
Alignment:
| Q |
10 |
gaaaaaatgttctggaccagcgaaacaaggtgttcgctcggggcttgttagtggtgtaggatttggtttatcttttttaattctatattgcacaaatgct |
109 |
Q |
| |
|
|||||||||||| | ||||| |||||||||||| | | ||| |||||||||||| ||||||| ||||| || ||||| |||||| |||||||||||| |
|
|
| T |
5825941 |
gaaaaaatgttcagcaccagaaaaacaaggtgttaggttgggacttgttagtggtataggattcggtttctcattttttgctctatactgcacaaatgct |
5826040 |
T |
|
| Q |
110 |
ttcatcttctacataggatc |
129 |
Q |
| |
|
||| |||||||||||||| |
|
|
| T |
5826041 |
ttctgtttctacataggatc |
5826060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 14 - 180
Target Start/End: Original strand, 5767825 - 5767991
Alignment:
| Q |
14 |
aaatgttctggaccagcgaaacaaggtgttcgctcggggcttgttagtggtgtaggatttggtttatcttttttaattctatattgcacaaatgctttca |
113 |
Q |
| |
|
|||||||| || |||| ||||||||||||| || |||||||| ||||||| |||||||||||| |||||| | ||||||||||| | |||||| |
|
|
| T |
5767825 |
aaatgttcagggccagaaaaacaaggtgttcattcagggcttgtgagtggtgcaggatttggtttctcttttgtcgctctatattgcatgagtgcttttt |
5767924 |
T |
|
| Q |
114 |
tcttctacataggatctattttagtgcatcacaggaaagcaacgtttgtagaaattttcagggtaca |
180 |
Q |
| |
|
||||||||||||||| | ||||||| ||| |||||||||| ||| |||| |||||| |||||| |
|
|
| T |
5767925 |
gtttctacataggatctgtcctagtgcaacacgggaaagcaacttttcaagaagttttcaaggtaca |
5767991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 11 - 129
Target Start/End: Original strand, 5781360 - 5781478
Alignment:
| Q |
11 |
aaaaaatgttctggaccagcgaaacaaggtgttcgctcggggcttgttagtggtgtaggatttggtttatcttttttaattctatattgcacaaatgctt |
110 |
Q |
| |
|
||||||||||| | ||||| ||||||||||| | | ||| |||||||||||||||||||||||||| | ||||| ||| || |||||||||| || |
|
|
| T |
5781360 |
aaaaaatgttcagcaccagaataacaaggtgttaggttgggacttgttagtggtgtaggatttggtttctaattttttgctctttactgcacaaatgatt |
5781459 |
T |
|
| Q |
111 |
tcatcttctacataggatc |
129 |
Q |
| |
|
|| |||||||||||||| |
|
|
| T |
5781460 |
tctgtttctacataggatc |
5781478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 330 - 385
Target Start/End: Original strand, 5781926 - 5781981
Alignment:
| Q |
330 |
actaacaaggccatagattccgcagcttcaatatttaacattcttgacagcaaacc |
385 |
Q |
| |
|
||||||||||||| |||||| |||||||||||||| | ||||| ||||||||||| |
|
|
| T |
5781926 |
actaacaaggccaaagattctacagcttcaatatttgaaattctagacagcaaacc |
5781981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 330 - 385
Target Start/End: Original strand, 5826474 - 5826529
Alignment:
| Q |
330 |
actaacaaggccatagattccgcagcttcaatatttaacattcttgacagcaaacc |
385 |
Q |
| |
|
||||||||||||| |||||| |||||||||||||| | ||||| ||||||||||| |
|
|
| T |
5826474 |
actaacaaggccaaagattctacagcttcaatatttgaaattctagacagcaaacc |
5826529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0159 (Bit Score: 35; Significance: 0.0000000003; HSPs: 3)
Name: scaffold0159
Description:
Target: scaffold0159; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 11 - 129
Target Start/End: Original strand, 26692 - 26810
Alignment:
| Q |
11 |
aaaaaatgttctggaccagcgaaacaaggtgttcgctcggggcttgttagtggtgtaggatttggtttatcttttttaattctatattgcacaaatgctt |
110 |
Q |
| |
|
||||||||||| | ||||| ||||||||||| | | ||| |||||||||||||||||||||||||| | ||||| ||| || |||||||||| || |
|
|
| T |
26692 |
aaaaaatgttcagcaccagaataacaaggtgttaggttgggacttgttagtggtgtaggatttggtttctaattttttgctctttactgcacaaatgatt |
26791 |
T |
|
| Q |
111 |
tcatcttctacataggatc |
129 |
Q |
| |
|
|| |||||||||||||| |
|
|
| T |
26792 |
tctgtttctacataggatc |
26810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0159; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 330 - 385
Target Start/End: Original strand, 27258 - 27313
Alignment:
| Q |
330 |
actaacaaggccatagattccgcagcttcaatatttaacattcttgacagcaaacc |
385 |
Q |
| |
|
||||||||||||| |||||| |||||||||||||| | ||||| ||||||||||| |
|
|
| T |
27258 |
actaacaaggccaaagattctacagcttcaatatttgaaattctagacagcaaacc |
27313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0159; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 330 - 385
Target Start/End: Original strand, 35389 - 35444
Alignment:
| Q |
330 |
actaacaaggccatagattccgcagcttcaatatttaacattcttgacagcaaacc |
385 |
Q |
| |
|
||||||||||||| |||||| |||||||||||||| | ||||| ||||||||||| |
|
|
| T |
35389 |
actaacaaggccaaagattctacagcttcaatatttgaaattctagacagcaaacc |
35444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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