View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11381_low_21 (Length: 357)
Name: NF11381_low_21
Description: NF11381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11381_low_21 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 14 - 344
Target Start/End: Original strand, 33203178 - 33203508
Alignment:
| Q |
14 |
gaaaccatctcaacaagaacaagaacataatccagaagtggaacaagaggatcatgcttccttgccaaatttggattggtgggattccatcatgaaagat |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33203178 |
gaaaccatctcaacaagaacaagaacataatccagaagtggaacaagaggatcatgcttccttgccaaatttggattggtgggattccatcatgaaagat |
33203277 |
T |
|
| Q |
114 |
ttaggtttacaagacgactcttcaactcccataatacccctcttgaaaaacaccaataatacctcagaaatttaccctaacccttctcaagatcaatttg |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33203278 |
ttaggtttacaagacgactcttcaactcccataatacccctcttgaaaaacaccaataatacctcagaaatttaccctaacccttctcaagatcaatttg |
33203377 |
T |
|
| Q |
214 |
atcaaactcaagacttcacttctctgtcagatatttactctaataaccaaaacctggcttataattaccctaacacaaacactaatctggatcatttagt |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33203378 |
atcaaactcaagacttcacttctctgtcagatatttactctaataaccaaaacctggcttataattaccctaacacaaacactaatctggatcatttagt |
33203477 |
T |
|
| Q |
314 |
taatgatttcaataataaccaaccaaacaac |
344 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
33203478 |
taatgatttcaataataaccaaccaaacaac |
33203508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University