View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11381_low_22 (Length: 354)
Name: NF11381_low_22
Description: NF11381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11381_low_22 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 298; Significance: 1e-167; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 1 - 339
Target Start/End: Complemental strand, 5433380 - 5433042
Alignment:
| Q |
1 |
gaattccaaagctttgtggaggttaaggtcagcatgtgagaaagtaaagagctttgtctacttttcactgttactagagctttgtttgttactagagctt |
100 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5433380 |
gaattccaaagctttgtggagattaaggtcagcatgtgataaagtaaagagctctgtctacttttcactgttactagagctttgtttgttactagagctt |
5433281 |
T |
|
| Q |
101 |
tgtttgagggaataaaccaggacttgtttaaacaatgcatggagacactggaaannnnnnnggatgaggcaaaaataagtaaaaatcaaggaaattatta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5433280 |
tgtttgagggaataaaccaggacttgtttaaacaatgcatggagacactggaaaaattttaggatgaggcaaaaataagtaaaaatcaaggaaattatta |
5433181 |
T |
|
| Q |
201 |
gagtcaatggagaaatcaaagagccatgcaaaagcattaattcttatgaagttgtggtgtatgatgcctcggttcaagcagcaatattgagtgttgaagg |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
5433180 |
gagtcaatggagaaatcaaagagccatgcaaaagcattaatccttatgaagttgtggtgtatgatgcctcggttcaagcagcgatattgagtgttgaagg |
5433081 |
T |
|
| Q |
301 |
agacaagaaaattcaagacttgttgttgttagatgttat |
339 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5433080 |
agacaagaaaattcaagacttgttgttgttagatgttat |
5433042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 198 - 339
Target Start/End: Original strand, 5446198 - 5446339
Alignment:
| Q |
198 |
ttagagtcaatggagaaatcaaagagccatgcaaaagcattaattcttatgaagttgtggtgtatgatgcctcggttcaagcagcaatattgagtgttga |
297 |
Q |
| |
|
|||||||||| | ||| |||||||||| ||||||||||||||| || |||||| ||||| |||| ||| | ||||||||||||||||||| | ||| |
|
|
| T |
5446198 |
ttagagtcaacgatgaagtcaaagagccttgcaaaagcattaatcctgatgaagctgtggcttatggcgccgctgttcaagcagcaatattgaatactga |
5446297 |
T |
|
| Q |
298 |
aggagacaagaaaattcaagacttgttgttgttagatgttat |
339 |
Q |
| |
|
||||||||||||||| |||||||||| |||| |||||||| |
|
|
| T |
5446298 |
aggagacaagaaaatcgaagacttgttactgttggatgttat |
5446339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 5445902 - 5445952
Alignment:
| Q |
1 |
gaattccaaagctttgtggaggttaaggtcagcatgtgagaaagtaaagag |
51 |
Q |
| |
|
||||| |||||||||| |||||||||| |||||||||||||||| |||||| |
|
|
| T |
5445902 |
gaatttcaaagctttggggaggttaagatcagcatgtgagaaagcaaagag |
5445952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 87 - 146
Target Start/End: Original strand, 5446025 - 5446084
Alignment:
| Q |
87 |
tgttactagagctttgtttgagggaataaaccaggacttgtttaaacaatgcatggagac |
146 |
Q |
| |
|
||||||||||||||| ||||||| ||||||| |||| ||||| ||| | ||||||||||| |
|
|
| T |
5446025 |
tgttactagagctttctttgaggaaataaacaaggatttgttcaaaaagtgcatggagac |
5446084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 5440772 - 5440718
Alignment:
| Q |
1 |
gaattccaaagctttgtggaggtta----aggtcagcatgtgagaaagtaaagag |
51 |
Q |
| |
|
|||||||||||||||| |||||||| ||||||||||||||||||| |||||| |
|
|
| T |
5440772 |
gaattccaaagctttggggaggttagttaaggtcagcatgtgagaaagcaaagag |
5440718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University