View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11381_low_23 (Length: 352)

Name: NF11381_low_23
Description: NF11381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11381_low_23
NF11381_low_23
[»] chr6 (8 HSPs)
chr6 (14-336)||(33524209-33524531)
chr6 (154-337)||(33525848-33526032)
chr6 (8-160)||(33525614-33525767)
chr6 (274-337)||(24186714-24186777)
chr6 (160-337)||(33521777-33521951)
chr6 (68-155)||(20788685-20788773)
chr6 (107-155)||(8534115-8534164)
chr6 (274-331)||(20788981-20789038)
[»] chr4 (2 HSPs)
chr4 (23-155)||(20660399-20660535)
chr4 (109-155)||(54077799-54077846)
[»] chr3 (7 HSPs)
chr3 (274-337)||(412310-412373)
chr3 (274-337)||(413650-413713)
chr3 (23-155)||(49960503-49960639)
chr3 (274-329)||(53324918-53324973)
chr3 (107-155)||(53324661-53324710)
chr3 (72-155)||(412018-412102)
chr3 (72-155)||(413921-414005)
[»] chr1 (6 HSPs)
chr1 (274-337)||(24343127-24343190)
chr1 (274-329)||(14122885-14122940)
chr1 (274-337)||(24355505-24355568)
chr1 (109-155)||(41699104-41699151)
chr1 (109-155)||(41704698-41704745)
chr1 (72-155)||(24343398-24343482)
[»] chr2 (4 HSPs)
chr2 (18-99)||(15230149-15230228)
chr2 (274-331)||(15049532-15049589)
chr2 (68-155)||(15049236-15049324)
chr2 (301-337)||(15230500-15230536)
[»] chr5 (1 HSPs)
chr5 (109-155)||(23557388-23557435)
[»] chr7 (1 HSPs)
chr7 (296-329)||(35049210-35049243)


Alignment Details
Target: chr6 (Bit Score: 263; Significance: 1e-146; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 14 - 336
Target Start/End: Original strand, 33524209 - 33524531
Alignment:
Q  14 gagcacattcatgcatacactctaatcatgttttgaacaatcaagtaaaatagttatcctcatttgtcaagaaagcacaacccaactacaggaattgacc 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| |||||||||||||||||||  ||||||||    
T  33524209 gagcacattcatgcatacactctaatcatgttttgaacaatcaagtaaaataattatcctcatttgacaataaagcacaacccaactacacaaattgacc 33524308  T
Q  114 atgatgatttactccaacaaaaagacaaaaggaatgtcatatatagtttgtaaactacttttattatctatgtctattacataataaaattgattatttt 213  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||    
T  33524309 atgattatttactccaacaaaaagacaaaaggaatgtcatatatagtttgtaaacaacttttattatctatgtctattacataataaaattgactatttt 33524408  T
Q  214 actctctaaacgaaaaagttttgaattgtttcaacatctcatattccaaattgtggcctccttactttgtctacatagtttatacaatctttttctccaa 313  Q
    ||||||||||||||||||||||||||| ||||| |||||||||||| |||||||||||||||||||||||||||||||||| | ||||||||||||||||    
T  33524409 actctctaaacgaaaaagttttgaattatttcagcatctcatattctaaattgtggcctccttactttgtctacatagtttcttcaatctttttctccaa 33524508  T
Q  314 atgtaagattctcatacctattt 336  Q
    ||||||||||||| | |||||||    
T  33524509 atgtaagattctcttgcctattt 33524531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 154 - 337
Target Start/End: Original strand, 33525848 - 33526032
Alignment:
Q  154 atatagtttgtaaactacttttattatctatgtctattacataataaaattgattattttactctctaaacgaaaaagttttgaa-ttgtttcaacatct 252  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||| || ||||| |||||    
T  33525848 atatagtttgtaaacaacttttattatctatgtctattacataataaaattgattattttactctctaacgtaaaaagttttgaaattatttcagcatct 33525947  T
Q  253 catattccaaattgtggcctccttactttgtctacatagtttatacaatctttttctccaaatgtaagattctcatacctatttg 337  Q
    ||||||||||||  |||||||||||||||||||| ||||||| |||||||||||||| |||||||||||||||||||||||||||    
T  33525948 catattccaaatcatggcctccttactttgtctatatagtttctacaatctttttcttcaaatgtaagattctcatacctatttg 33526032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 8 - 160
Target Start/End: Original strand, 33525614 - 33525767
Alignment:
Q  8 cattaagagcacattcatgcatacactctaatcatgttttgaacaatcaagtaaaa---tagttatcctcatttgtcaagaaagcacaacccaactacag 104  Q
    |||| ||||||| |||||||||||||||||| |||||||||||||| |||||||||   || ||||| ||||||| ||| ||||||||| | ||| |||     
T  33525614 catttagagcacgttcatgcatacactctaaccatgttttgaacaaccaagtaaaagcttaattatcttcatttgacaataaagcacaatctaac-aca- 33525711  T
Q  105 gaattgaccatgatgatttactccaacaaaaa-gacaaaaggaatgtcatatatagt 160  Q
     ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  33525712 -aattgaccatgatgatttactccaacaaaaacgacaaaaggaatgtcatatatagt 33525767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 274 - 337
Target Start/End: Original strand, 24186714 - 24186777
Alignment:
Q  274 cttactttgtctacatagtttatacaatctttttctccaaatgtaagattctcatacctatttg 337  Q
    |||||||||||||  | |||| |||| ||||||||||||||||| ||||||||||||| |||||    
T  24186714 cttactttgtctatgtggtttctacagtctttttctccaaatgtgagattctcatacccatttg 24186777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 160 - 337
Target Start/End: Complemental strand, 33521951 - 33521777
Alignment:
Q  160 tttgtaaactacttttattatctatgtctattacataataaaattgattattttactctctaaacgaaaaagttttgaattgtttcaacatctcatattc 259  Q
    ||||||||| |||||||| | | ||| | |||||||||||||||||| ||||||| | ||||| | ||| || ||| || ||||||| ||||||  ||||    
T  33521951 tttgtaaacaacttttatcaccgatgcc-attacataataaaattgactattttatt-tctaa-caaaatagatttaaactgtttcagcatctcccattc 33521855  T
Q  260 caaattgtggcctccttactttgtctacatagtttatacaatctttttctccaaatgtaagattctcatacctatttg 337  Q
    ||| ||||||  | |||||||| | || ||  ||| ||||||||||| ||  |||| |||||||||||||| ||||||    
T  33521854 caagttgtggttttcttactttatttatatgatttctacaatcttttgctttaaatttaagattctcatacatatttg 33521777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 68 - 155
Target Start/End: Original strand, 20788685 - 20788773
Alignment:
Q  68 tatcctcatttgtcaagaaagcacaacccaactacaggaattgaccatgatgatttactccaacaaaaaga-caaaaggaatgtcatat 155  Q
    ||||||| |||| ||| | ||||||||||||| |||   | ||||| ||||||||||||||||||||| || ||||||| |||||||||    
T  20788685 tatcctcgtttgacaacagagcacaacccaacaacatagactgaccgtgatgatttactccaacaaaaggagcaaaaggcatgtcatat 20788773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 155
Target Start/End: Original strand, 8534115 - 8534164
Alignment:
Q  107 attgaccatgatgatttactccaacaaaaaga-caaaaggaatgtcatat 155  Q
    ||||||| ||||||||||||||||||||| || ||||||| |||||||||    
T  8534115 attgaccgtgatgatttactccaacaaaaggagcaaaaggcatgtcatat 8534164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 274 - 331
Target Start/End: Original strand, 20788981 - 20789038
Alignment:
Q  274 cttactttgtctacatagtttatacaatctttttctccaaatgtaagattctcatacc 331  Q
    |||||||||||||  |||||| | || ||||||||||||||||| ||||| |||||||    
T  20788981 cttactttgtctatgtagtttttgcagtctttttctccaaatgtgagattttcatacc 20789038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 23 - 155
Target Start/End: Complemental strand, 20660535 - 20660399
Alignment:
Q  23 catgcatacactctaatcatgttttgaacaatcaagtaaaa----tagttatcctcatttgtcaagaaagcacaacccaactacaggaattgaccatgat 118  Q
    |||||||||| | ||| |||||| ||||||| |||||||||    |||| ||||||||||| ||| | ||||||||||||| |||   |||||| |||||    
T  20660535 catgcatacattttaaacatgttgtgaacaaccaagtaaaagttttagt-atcctcatttgacaatagagcacaacccaacaacatagattgactatgat 20660437  T
Q  119 gatttactccaacaaaaaga-caaaaggaatgtcatat 155  Q
    |||||| |||||||||| || || |||| |||||||||    
T  20660436 gatttagtccaacaaaaggagcagaaggcatgtcatat 20660399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 109 - 155
Target Start/End: Original strand, 54077799 - 54077846
Alignment:
Q  109 tgaccatgatgatttactccaacaaaaaga-caaaaggaatgtcatat 155  Q
    ||||||||||||||||||||||||||| || ||||||| |||||||||    
T  54077799 tgaccatgatgatttactccaacaaaaggagcaaaaggcatgtcatat 54077846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 274 - 337
Target Start/End: Original strand, 412310 - 412373
Alignment:
Q  274 cttactttgtctacatagtttatacaatctttttctccaaatgtaagattctcatacctatttg 337  Q
    |||||||||||||  | |||| |||| ||||||||||||||||| ||||||||||||| |||||    
T  412310 cttactttgtctatgtggtttctacagtctttttctccaaatgtgagattctcatacccatttg 412373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 274 - 337
Target Start/End: Complemental strand, 413713 - 413650
Alignment:
Q  274 cttactttgtctacatagtttatacaatctttttctccaaatgtaagattctcatacctatttg 337  Q
    |||||||||||||  | |||| |||| ||||||||||||||||| ||||||||||||| |||||    
T  413713 cttactttgtctatgtggtttctacagtctttttctccaaatgtgagattctcatacccatttg 413650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 23 - 155
Target Start/End: Complemental strand, 49960639 - 49960503
Alignment:
Q  23 catgcatacactctaatcatgttttgaacaatcaagtaaaatagt---tatcctcatttgtcaagaaagcacaacccaactacaggaattgaccatgatg 119  Q
    |||||||||| ||||| ||||| || ||||| |||||||||   |   |||||||||||| ||| | ||||||||||||| |||   | ||||| |||||    
T  49960639 catgcatacattctaaccatgtcttaaacaaccaagtaaaagtttcagtatcctcatttgacaacagagcacaacccaacaacatagactgaccgtgatg 49960540  T
Q  120 atttactccaacaaaaag-acaaaaggaatgtcatat 155  Q
    |||||| ||||||||| | |||||||| |||||||||    
T  49960539 atttacgccaacaaaaggaacaaaaggcatgtcatat 49960503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 274 - 329
Target Start/End: Original strand, 53324918 - 53324973
Alignment:
Q  274 cttactttgtctacatagtttatacaatctttttctccaaatgtaagattctcata 329  Q
    ||||| |||||||  || ||| |||||||||||||||||||||||||||| |||||    
T  53324918 cttacattgtctatgtaatttctacaatctttttctccaaatgtaagattatcata 53324973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 155
Target Start/End: Original strand, 53324661 - 53324710
Alignment:
Q  107 attgaccatgatgatttactccaacaaaaa-gacaaaaggaatgtcatat 155  Q
    ||||||| |||||||| ||||||||||||| ||||||||| |||||||||    
T  53324661 attgaccgtgatgattgactccaacaaaaaggacaaaaggcatgtcatat 53324710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 72 - 155
Target Start/End: Original strand, 412018 - 412102
Alignment:
Q  72 ctcatttgtcaagaaagcacaacccaactacaggaattgaccatgatgatttactccaacaaaaaga-caaaaggaatgtcatat 155  Q
    |||||||| ||| | ||||||||||| | |||   | ||||||||||| ||||||||||||||| || ||||||| |||||||||    
T  412018 ctcatttgacaacagagcacaacccagcaacatcgactgaccatgatggtttactccaacaaaaggagcaaaaggcatgtcatat 412102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 72 - 155
Target Start/End: Complemental strand, 414005 - 413921
Alignment:
Q  72 ctcatttgtcaagaaagcacaacccaactacaggaattgaccatgatgatttactccaacaaaaaga-caaaaggaatgtcatat 155  Q
    |||||||| ||| | ||||||||||| | |||   | ||||||||||| ||||||||||||||| || ||||||| |||||||||    
T  414005 ctcatttgacaacagagcacaacccagcaacatcgactgaccatgatggtttactccaacaaaaggagcaaaaggcatgtcatat 413921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 274 - 337
Target Start/End: Complemental strand, 24343190 - 24343127
Alignment:
Q  274 cttactttgtctacatagtttatacaatctttttctccaaatgtaagattctcatacctatttg 337  Q
    |||||||||||||  | |||| |||| ||||||||||||||||| ||||||||||||| |||||    
T  24343190 cttactttgtctatgtggtttctacagtctttttctccaaatgtgagattctcatacccatttg 24343127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 274 - 329
Target Start/End: Complemental strand, 14122940 - 14122885
Alignment:
Q  274 cttactttgtctacatagtttatacaatctttttctccaaatgtaagattctcata 329  Q
    |||||||||||||  || ||| ||||||||||||||||||| |||||||| |||||    
T  14122940 cttactttgtctatgtaatttctacaatctttttctccaaaagtaagattatcata 14122885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 274 - 337
Target Start/End: Complemental strand, 24355568 - 24355505
Alignment:
Q  274 cttactttgtctacatagtttatacaatctttttctccaaatgtaagattctcatacctatttg 337  Q
    |||||||||||||  | |||| | || ||||||||||||||||| ||||||||||||| |||||    
T  24355568 cttactttgtctatgtggtttctgcagtctttttctccaaatgtgagattctcatacccatttg 24355505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 109 - 155
Target Start/End: Complemental strand, 41699151 - 41699104
Alignment:
Q  109 tgaccatgatgatttactccaacaaaaaga-caaaaggaatgtcatat 155  Q
    ||||||||||||||||||||||||||| || ||||||| |||||||||    
T  41699151 tgaccatgatgatttactccaacaaaaggagcaaaaggcatgtcatat 41699104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 109 - 155
Target Start/End: Complemental strand, 41704745 - 41704698
Alignment:
Q  109 tgaccatgatgatttactccaacaaaaaga-caaaaggaatgtcatat 155  Q
    ||||||||||||||||||||||||||| || ||||||| |||||||||    
T  41704745 tgaccatgatgatttactccaacaaaaggagcaaaaggcatgtcatat 41704698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 72 - 155
Target Start/End: Complemental strand, 24343482 - 24343398
Alignment:
Q  72 ctcatttgtcaagaaagcacaacccaactacaggaattgaccatgatgatttactccaacaaaaaga-caaaaggaatgtcatat 155  Q
    |||||||| ||| | ||||||||||| | |||   | ||||||||||| ||||||||||||||| || ||||||| |||||||||    
T  24343482 ctcatttgacaacagagcacaacccagcaacatcgactgaccatgatggtttactccaacaaaaggagcaaaaggcatgtcatat 24343398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 99
Target Start/End: Original strand, 15230149 - 15230228
Alignment:
Q  18 acattcatgcatacactctaatcatgttttgaacaatcaagtaaaatagttatcctcatttgtcaagaaagcacaacccaac 99  Q
    ||||||||||||||| ||||| ||||| |  ||||| |||||||||  |||||||||||||| ||| | |||||||||||||    
T  15230149 acattcatgcatacattctaaccatgtctgaaacaaccaagtaaaa--gttatcctcatttgacaacagagcacaacccaac 15230228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 274 - 331
Target Start/End: Original strand, 15049532 - 15049589
Alignment:
Q  274 cttactttgtctacatagtttatacaatctttttctccaaatgtaagattctcatacc 331  Q
    |||||||||||||  |||||||| || ||||||||||||||||| ||||| |||||||    
T  15049532 cttactttgtctatgtagtttatgcagtctttttctccaaatgtgagattttcatacc 15049589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 68 - 155
Target Start/End: Original strand, 15049236 - 15049324
Alignment:
Q  68 tatcctcatttgtcaagaaagcacaacccaactacaggaattgaccatgatgatttactccaacaaaaaga-caaaaggaatgtcatat 155  Q
    ||||||||||||  || | ||||||||||||| |||   | ||||| ||||||||||||||||||||| || ||||||| |||||||||    
T  15049236 tatcctcatttgataacagagcacaacccaacaacatagactgaccgtgatgatttactccaacaaaaggagcaaaaggcatgtcatat 15049324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 301 - 337
Target Start/End: Original strand, 15230500 - 15230536
Alignment:
Q  301 tctttttctccaaatgtaagattctcatacctatttg 337  Q
    ||||||||||||||||| ||||||||||||| |||||    
T  15230500 tctttttctccaaatgtgagattctcatacccatttg 15230536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 109 - 155
Target Start/End: Complemental strand, 23557435 - 23557388
Alignment:
Q  109 tgaccatgatgatttactccaacaaaaaga-caaaaggaatgtcatat 155  Q
    ||||||||||||||||||||||||||| || ||||||| |||||||||    
T  23557435 tgaccatgatgatttactccaacaaaaggagcaaaaggcatgtcatat 23557388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 329
Target Start/End: Complemental strand, 35049243 - 35049210
Alignment:
Q  296 tacaatctttttctccaaatgtaagattctcata 329  Q
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T  35049243 tacaatctttttctccaaatgtaagattatcata 35049210  T

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