View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11381_low_25 (Length: 346)
Name: NF11381_low_25
Description: NF11381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11381_low_25 |
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Alignment Details
Target: chr8 (Bit Score: 105; Significance: 2e-52; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 118 - 324
Target Start/End: Complemental strand, 5455512 - 5455304
Alignment:
| Q |
118 |
tgacagcttccaacgcggtaattttcacaagatcctactggtgtgcgaaagctagcaaatttgattgatgatatgttttgtccattgccacatgacaagt |
217 |
Q |
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||||||||||| ||||||| ||| ||||||| || ||||| |||| ||||||||||||||||||||||||||| ||||||||| ||||||||||| | |
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| T |
5455512 |
tgacagcttccttcgcggtagtttccacaagacccgactggagtgccaaagctagcaaatttgattgatgatattttttgtccaggaccacatgacaaat |
5455413 |
T |
|
| Q |
218 |
gtgtttttggactcacaggtttgctaac-ttaccagaagcatgcatctgataactaacaaca-ttcactgccactcataaatatcagcacaaacactatc |
315 |
Q |
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||| |||||||||||||||| | |||| ||||||||||| ||||| ||||||||||||| | || ||||||||||||||||||||||||||||||||| |
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| T |
5455412 |
gtgcttttggactcacaggtatcttaactttaccagaagcttgcatttgataactaacaagatttggctgccactcataaatatcagcacaaacactatc |
5455313 |
T |
|
| Q |
316 |
tatatccct |
324 |
Q |
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||||||||| |
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| T |
5455312 |
tatatccct |
5455304 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 117 - 237
Target Start/End: Complemental strand, 5464177 - 5464057
Alignment:
| Q |
117 |
ttgacagcttccaacgcggtaattttcacaagatcctactggtgtgcgaaagctagcaaatttgattgatgatatgttttgtccattgccacatgacaag |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||| |||| ||||||||||||||||||||||||||| ||||||||| | |||||||||| |
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| T |
5464177 |
ttgacagcttccaacgcggtaattttcacaagatcctagtggagtgccaaagctagcaaatttgattgatgatattttttgtccaataccacatgacaga |
5464078 |
T |
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| Q |
217 |
tgtgtttttggactcacaggt |
237 |
Q |
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||||||||||||||||||||| |
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| T |
5464077 |
tgtgtttttggactcacaggt |
5464057 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 35 - 120
Target Start/End: Complemental strand, 5464288 - 5464202
Alignment:
| Q |
35 |
catgtgtctaatttgtgtttgtctatagcaccctatc-actataaaaaagaaaccatcctagaaaaagaagtaaaagtaccttttga |
120 |
Q |
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| T |
5464288 |
catgtgtctaattagtgtttgtctataacaccctatccactataaaaaagaaaccatcctagaaaaagaagtaaaaataccttttga |
5464202 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 35 - 100
Target Start/End: Complemental strand, 5455628 - 5455562
Alignment:
| Q |
35 |
catgtgtctaatttgtgtttgtctatagcaccctatc-actataaaaaagaaaccatcctagaaaaa |
100 |
Q |
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|||||||| |||| |||| || ||| ||||||||||| || |||||||||||||||||||||||||| |
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| T |
5455628 |
catgtgtcaaattagtgtctggctagagcaccctatccacaataaaaaagaaaccatcctagaaaaa |
5455562 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 143 - 324
Target Start/End: Original strand, 42986282 - 42986465
Alignment:
| Q |
143 |
cacaagatcctactggtgtgcgaaagctagcaaatttgattgatgatatgttttgtccattgccacatgacaagtgtgtttttggactcacaggtttgct |
242 |
Q |
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||||||| |||||||| || | ||||||||| |||||||| |||||||| || |||||| |||||| || || |||| |||||| |||||||||||| | |
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| T |
42986282 |
cacaagaccctactggagtaccaaagctagcgaatttgatcgatgatattttctgtccagggccacaagataaatgtgcttttggtctcacaggtttgtt |
42986381 |
T |
|
| Q |
243 |
a-acttaccagaagcatgcatctgataactaacaaca-ttcactgccactcataaatatcagcacaaacactatctatatccct |
324 |
Q |
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| || ||||||| |||||||||||||| | || | || |||||||||||||||||| ||||| ||||||||||||||||| |
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| T |
42986382 |
agttttgccagaagtttgcatctgataacttataagatttggctgccactcataaatatctgcacatacactatctatatccct |
42986465 |
T |
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