View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11381_low_27 (Length: 330)
Name: NF11381_low_27
Description: NF11381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11381_low_27 |
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Alignment Details
Target: chr3 (Bit Score: 162; Significance: 2e-86; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 150 - 319
Target Start/End: Original strand, 49998988 - 49999157
Alignment:
| Q |
150 |
aatcacctcatctttccttaccacaaaaccatgacatcttgcataattacaataaaagtcataagcttcctcatcgctaccaaactctagccctcgtatt |
249 |
Q |
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| T |
49998988 |
aatcacctcatctttccttaccacaaaaccatgacatcttgcataattacaataaaagtcataagcttcctcatcgctaccaaactctagccctcgtatt |
49999087 |
T |
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| Q |
250 |
tcatcaactgtcaagtcaacaatctttttaaatttaccatccgaggcatccattcttgcactatcattct |
319 |
Q |
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| T |
49999088 |
tcatcagctgtcaagtcaacaatctttttaaatttaccatctgaggcatccattcttgcactatcattct |
49999157 |
T |
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Target: chr3; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 18 - 65
Target Start/End: Original strand, 49998940 - 49998987
Alignment:
| Q |
18 |
agcttggcaattagttcgactgctagatctatgatattttttcctatt |
65 |
Q |
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| T |
49998940 |
agcttggcaattagttcgactgctagatctatgatcttttttcctatt |
49998987 |
T |
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