View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11381_low_28 (Length: 328)
Name: NF11381_low_28
Description: NF11381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11381_low_28 |
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Alignment Details
Target: chr1 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 18 - 264
Target Start/End: Original strand, 4679884 - 4680131
Alignment:
| Q |
18 |
agaactgagaagatactgtgagaaattaccttcattagataacttacatagcatttgaaggtgcaagaatgggtatatatggacagttccactgtatcct |
117 |
Q |
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| T |
4679884 |
agaactgagaagatactgtgagaaattaccctcattagataacttacatagcatttgaaggtgcatgaatgggtatacatggacagttccactgtatcct |
4679983 |
T |
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| Q |
118 |
gtttaattcttttggtgcatttt-ttctatcttttgaactctttataattgtctattcattgaacttgtgctttgattagttgttaattgttattactgt |
216 |
Q |
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| T |
4679984 |
gtttaattcttttggtgcatttttttctatcttttgaactctttataattgtctattcattgaacttgtgatgtgattagttgttaattgttattactgt |
4680083 |
T |
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| Q |
217 |
gaattcacacaaactcgcatcaaagcatcaatactatgatgtgtggag |
264 |
Q |
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| T |
4680084 |
gaattcacacaaactcgcatcaaagcatcaatactatgatgtgtggag |
4680131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 272 - 310
Target Start/End: Complemental strand, 4680793 - 4680755
Alignment:
| Q |
272 |
ggggtcggttaaattgacaatatcatcgatttaaaggta |
310 |
Q |
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| T |
4680793 |
ggggtcggttaaattgacaacatcatcgatttaaaggta |
4680755 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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