View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11381_low_29 (Length: 314)
Name: NF11381_low_29
Description: NF11381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11381_low_29 |
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Alignment Details
Target: chr5 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 16 - 309
Target Start/End: Complemental strand, 4384453 - 4384160
Alignment:
| Q |
16 |
ctatgtacaacttatacaacaacattaatcaagaacttttcagttttattaaaaacacttaattccaagtgtaataggagagtacatgtcctaatcattt |
115 |
Q |
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| T |
4384453 |
ctatgtacaacttatacaacaaaattaatcaagaacttttcagttttattaaaaacacttaattccaagtgtaataggagagtacatgtcctaatcattt |
4384354 |
T |
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| Q |
116 |
gctgcactagttgtagtcaataggaataggaaccttgcttatgagagcatgcatattggaattcaatccagtctcaatttctattggttttctgttgtct |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
4384353 |
gctgcactagttgtagtcaataggaataggaaccttgcttatgagagcatgcatattggaattcaatccaggctcaatttctattggttttctgttgtct |
4384254 |
T |
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| Q |
216 |
atcataccatggcttctaagcctttaaacagaaatgtttcagtcctggaagtctgtccaaatatattaaccgacacattgatgtccatctcatt |
309 |
Q |
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|||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| |
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| T |
4384253 |
atcataccatggcttctaagcctttagacggaaatgtttcagtcctggaagtctgtccaaatatattaaccgacacattgttgtttatctcatt |
4384160 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 64; Significance: 6e-28; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 87 - 182
Target Start/End: Original strand, 35546487 - 35546582
Alignment:
| Q |
87 |
taataggagagtacatgtcctaatcatttgctgcactagttgtagtcaataggaataggaaccttgcttatgagagcatgcatattggaattcaat |
182 |
Q |
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| T |
35546487 |
taataggagagtacatgtcctgatcatttgccgcactagttgttgtaaataggagtatgaaccttgcttatgagagcataaatattggaattcaat |
35546582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 17 - 70
Target Start/End: Original strand, 34689484 - 34689537
Alignment:
| Q |
17 |
tatgtacaacttatacaacaacattaatcaagaacttttcagttttattaaaaa |
70 |
Q |
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| T |
34689484 |
tatgtacaacctatacgacaaaactaatcaagaacttttcagttttattgaaaa |
34689537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 17 - 70
Target Start/End: Original strand, 34711896 - 34711949
Alignment:
| Q |
17 |
tatgtacaacttatacaacaacattaatcaagaacttttcagttttattaaaaa |
70 |
Q |
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|||||||||| ||||| |||| | ||||||||||||||||||||||||| |||| |
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| T |
34711896 |
tatgtacaacctatacgacaaaactaatcaagaacttttcagttttattgaaaa |
34711949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 132 - 201
Target Start/End: Complemental strand, 46520378 - 46520309
Alignment:
| Q |
132 |
tcaataggaataggaaccttgcttatgagagcatgcatattggaattcaatccagtctcaatttctattg |
201 |
Q |
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||||||||||||| ||||||||||||||||||| | ||||| |||||| | ||| | |||||||| |||| |
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| T |
46520378 |
tcaataggaatagcaaccttgcttatgagagcaggtatattcgaattcgacccaatgtcaatttccattg |
46520309 |
T |
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